Wall clock time and date at job start Tue Mar 31 2020 19:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38175 * 120.49660 * 2 1 4 4 N 1.31790 * 120.89148 * 180.02562 * 3 2 1 5 5 C 1.31830 * 122.05246 * 359.97438 * 4 3 2 6 6 C 1.38131 * 120.89532 * 0.02562 * 5 4 3 7 7 C 1.39789 * 120.50028 * 180.02562 * 2 1 3 8 8 C 1.48157 * 120.92390 * 359.97438 * 7 2 1 9 9 O 1.21515 * 119.99992 * 315.76435 * 8 7 2 10 10 N 1.34778 * 119.99855 * 135.75689 * 8 7 2 11 11 C 1.46500 * 120.00127 * 3.80281 * 10 8 7 12 12 C 1.46499 * 119.99603 * 183.79877 * 10 8 7 13 13 C 1.53008 * 109.47036 * 90.00562 * 12 10 8 14 14 H 1.08998 * 109.47146 * 64.99630 * 13 12 10 15 15 C 1.52994 * 109.46850 * 184.99858 * 13 12 10 16 16 N 1.46898 * 109.46793 * 304.99482 * 13 12 10 17 17 C 1.46904 * 110.99823 * 154.99857 * 16 13 12 18 18 C 1.50705 * 109.46896 * 179.97438 * 17 16 13 19 19 O 1.21291 * 120.00306 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99596 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99821 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99635 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00079 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99816 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00000 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47122 * 90.00105 * 25 23 21 27 27 H 1.48504 * 109.46690 * 210.00215 * 25 23 21 28 28 H 1.48500 * 109.47000 * 329.99668 * 25 23 21 29 29 H 1.09003 * 109.47053 * 272.44416 * 1 2 3 30 30 H 1.09002 * 109.47446 * 32.44041 * 1 2 3 31 31 H 1.09004 * 109.47167 * 152.44623 * 1 2 3 32 32 H 1.07992 * 119.55131 * 0.03858 * 3 2 1 33 33 H 1.07998 * 119.55426 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.49540 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.46945 * 84.74091 * 11 10 8 36 36 H 1.08997 * 109.46917 * 204.74213 * 11 10 8 37 37 H 1.09000 * 109.46698 * 324.73930 * 11 10 8 38 38 H 1.09004 * 109.47012 * 210.00052 * 12 10 8 39 39 H 1.08998 * 109.47438 * 330.00636 * 12 10 8 40 40 H 1.09004 * 109.46943 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.47301 * 299.99288 * 15 13 12 42 42 H 1.08998 * 109.47432 * 59.99947 * 15 13 12 43 43 H 1.00909 * 111.00198 * 31.04579 * 16 13 12 44 44 H 1.08992 * 109.47024 * 300.00178 * 17 16 13 45 45 H 1.09000 * 109.46927 * 60.00617 * 17 16 13 46 46 H 0.96998 * 119.99996 * 0.02562 * 20 18 17 47 47 H 0.97001 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5261 1.1997 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2165 -1.2045 -0.0005 8 6 1.5078 -2.5055 -0.0006 9 8 0.5554 -2.6786 0.7339 10 7 1.9195 -3.4971 -0.8153 11 6 3.1173 -3.3181 -1.6397 12 6 1.1693 -4.7539 -0.8764 13 6 0.0955 -4.6546 -1.9619 14 1 0.5725 -4.5557 -2.9369 15 6 -0.7679 -5.9175 -1.9422 16 7 -0.7494 -3.4798 -1.7087 17 6 -1.3690 -2.9994 -2.9511 18 6 -2.2266 -1.7968 -2.6522 19 8 -2.3129 -1.3805 -1.5163 20 7 -2.8979 -1.1838 -3.6474 21 6 -3.6785 -0.0901 -3.3755 22 1 -3.7552 0.2805 -2.3639 23 6 -4.3709 0.5416 -4.4013 24 7 -4.2779 0.0903 -5.6319 25 14 -5.4340 2.0323 -4.0309 26 1 -4.6176 3.2662 -4.1574 27 1 -6.5641 2.0855 -4.9928 28 1 -5.9655 1.9299 -2.6480 29 1 -0.3633 0.0438 1.0268 30 1 -0.3634 0.8673 -0.5513 31 1 -0.3634 -0.9111 -0.4754 32 1 1.6691 2.1263 0.0006 33 1 5.3120 0.1417 -0.0014 34 1 4.1995 -2.0546 -0.0010 35 1 4.0020 -3.5680 -1.0541 36 1 3.0606 -3.9723 -2.5096 37 1 3.1802 -2.2808 -1.9686 38 1 1.8497 -5.5722 -1.1124 39 1 0.6956 -4.9416 0.0871 40 1 -1.5326 -5.8469 -2.7157 41 1 -0.1410 -6.7892 -2.1300 42 1 -1.2450 -6.0163 -0.9671 43 1 -0.2226 -2.7455 -1.2599 44 1 -0.5905 -2.7234 -3.6622 45 1 -1.9874 -3.7892 -3.3776 46 1 -2.8292 -1.5170 -4.5557 47 1 -4.7616 0.5310 -6.3480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725488369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:30 Heat of formation + Delta-G solvation = -21.251721 kcal Electronic energy + Delta-G solvation = -30061.431438 eV Core-core repulsion = 26051.774822 eV Total energy + Delta-G solvation = -4009.656616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08143 -39.49866 -38.20089 -36.74556 -35.18680 -33.87489 -33.45006 -32.25746 -31.25747 -30.78075 -27.78363 -27.46140 -26.37849 -26.24882 -24.20172 -23.78843 -22.28017 -20.68608 -19.80913 -19.20255 -17.92546 -17.73760 -17.05675 -16.69119 -16.06587 -15.69484 -15.51895 -15.25259 -14.90954 -14.66460 -14.42015 -14.15974 -13.83581 -13.64991 -13.44210 -13.37965 -13.26745 -12.86130 -12.71350 -12.54327 -12.36888 -12.07309 -11.84049 -11.77491 -11.65771 -11.56758 -11.47805 -11.37037 -11.09081 -10.85232 -10.37696 -10.33502 -10.19270 -9.84156 -9.48981 -9.40224 -8.99509 -8.87646 -8.35363 -7.98869 -7.91306 -6.39191 -3.79430 0.72499 0.97601 2.54235 2.76113 3.19114 3.27813 3.33947 3.65970 3.93805 4.09500 4.16775 4.30045 4.35571 4.61003 4.75969 4.77286 4.80525 4.90266 5.00814 5.08677 5.21010 5.25283 5.29238 5.33404 5.35357 5.42963 5.57461 5.64234 5.73345 5.73744 5.78828 5.81746 6.00592 6.02477 6.10432 6.16646 6.29315 6.30574 6.41678 6.48660 6.81727 7.05401 7.31784 7.57668 7.77793 7.79708 7.97854 8.09366 8.65118 9.21098 9.57571 10.09652 10.78770 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.004070 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.991200 B = 6877.370073 C = 8842.421539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.071 4.071 3 C 0.095 3.905 4 N -0.468 5.468 5 C 0.078 3.922 6 C -0.144 4.144 7 C -0.094 4.094 8 C 0.552 3.448 9 O -0.489 6.489 10 N -0.619 5.619 11 C 0.073 3.927 12 C 0.112 3.888 13 C 0.065 3.935 14 H 0.041 0.959 15 C -0.137 4.137 16 N -0.658 5.658 17 C 0.047 3.953 18 C 0.440 3.560 19 O -0.571 6.571 20 N -0.565 5.565 21 C -0.296 4.296 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.928 3.072 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.140 0.860 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.350 0.650 44 H 0.036 0.964 45 H 0.085 0.915 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.248 -8.451 5.194 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.063 4.063 4 N -0.177 5.177 5 C -0.078 4.078 6 C -0.164 4.164 7 C -0.105 4.105 8 C 0.340 3.660 9 O -0.362 6.362 10 N -0.354 5.354 11 C -0.070 4.070 12 C -0.011 4.011 13 C -0.046 4.046 14 H 0.059 0.941 15 C -0.196 4.196 16 N -0.297 5.297 17 C -0.085 4.085 18 C 0.225 3.775 19 O -0.455 6.455 20 N -0.202 5.202 21 C -0.425 4.425 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.755 3.245 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.181 0.819 33 H 0.175 0.825 34 H 0.158 0.842 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.174 0.826 44 H 0.054 0.946 45 H 0.103 0.897 46 H 0.224 0.776 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.483 -7.759 6.405 20.171 hybrid contribution -0.064 0.098 -1.192 1.198 sum 17.419 -7.660 5.213 19.730 Atomic orbital electron populations 1.21014 0.87313 1.05926 1.03565 1.21335 0.99134 0.92211 0.94669 1.22776 0.89545 0.97693 0.96238 1.67529 1.08387 1.31743 1.10007 1.22644 1.00320 0.87314 0.97529 1.22423 0.93639 1.00264 1.00115 1.20206 0.93981 0.93720 1.02579 1.18337 0.83637 0.83430 0.80597 1.90919 1.25908 1.80833 1.38537 1.47821 1.28571 1.15855 1.43156 1.22049 0.86673 1.03212 0.95072 1.21824 0.93311 0.84438 1.01487 1.21951 0.92679 0.93336 0.96678 0.94146 1.21739 0.99586 0.94997 1.03258 1.60235 1.36527 1.09482 1.23421 1.21764 0.97705 0.97686 0.91390 1.19805 0.85143 0.86270 0.86272 1.90516 1.66866 1.67124 1.20971 1.41860 1.41750 1.27489 1.09113 1.19691 1.21999 1.04658 0.96189 0.87893 1.25237 0.98455 0.99496 0.94764 1.69612 1.43448 1.41588 0.99844 0.85888 0.79209 0.81002 0.78390 1.20470 1.20978 1.19388 0.90132 0.90816 0.88279 0.81937 0.82453 0.84193 0.92101 0.90622 0.90814 0.89657 0.88508 0.92201 0.92817 0.91564 0.82592 0.94601 0.89689 0.77620 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.07 36.01 0.33 -1.78 16 2 C -0.07 -1.05 5.93 -104.06 -0.62 -1.67 16 3 C 0.10 1.27 10.87 -17.59 -0.19 1.08 16 4 N -0.47 -6.00 10.33 -13.31 -0.14 -6.14 16 5 C 0.08 0.80 11.17 -17.59 -0.20 0.60 16 6 C -0.14 -1.46 7.82 -39.02 -0.30 -1.76 16 7 C -0.09 -1.27 5.06 -104.65 -0.53 -1.80 16 8 C 0.55 8.13 4.95 -12.19 -0.06 8.06 16 9 O -0.49 -9.04 13.88 5.35 0.07 -8.97 16 10 N -0.62 -7.05 2.66 -182.57 -0.49 -7.54 16 11 C 0.07 0.56 9.00 59.85 0.54 1.10 16 12 C 0.11 1.22 5.19 -4.04 -0.02 1.20 16 13 C 0.07 0.83 2.95 -67.71 -0.20 0.63 16 14 H 0.04 0.48 7.80 -51.93 -0.40 0.08 16 15 C -0.14 -1.56 9.41 37.15 0.35 -1.21 16 16 N -0.66 -11.60 5.87 -107.99 -0.63 -12.24 16 17 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 18 C 0.44 10.49 7.82 -10.98 -0.09 10.40 16 19 O -0.57 -15.21 13.85 5.55 0.08 -15.13 16 20 N -0.57 -14.36 5.29 -10.96 -0.06 -14.42 16 21 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 22 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.66 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.26 8.11 -51.93 -0.42 0.84 16 31 H 0.10 2.04 3.34 -51.93 -0.17 1.86 16 32 H 0.16 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 34 H 0.14 0.99 5.94 -52.49 -0.31 0.67 16 35 H 0.06 0.32 6.94 -51.93 -0.36 -0.04 16 36 H 0.08 0.46 8.03 -51.93 -0.42 0.05 16 37 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 38 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 39 H 0.10 1.23 7.37 -51.93 -0.38 0.85 16 40 H 0.06 0.72 7.45 -51.93 -0.39 0.34 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.35 6.55 2.98 -39.29 -0.12 6.44 16 44 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 45 H 0.08 1.47 7.44 -51.93 -0.39 1.08 16 46 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 47 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -33.88 377.80 -7.50 -41.37 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -6.47 Total: 17.34 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: -1.26 Total: 7.83 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.59 Total: -64.27 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.15 Total: -24.10 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.88 -7.50 -41.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725488369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.121 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds