Wall clock time and date at job start Tue Mar 31 2020 19:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38175 * 120.49660 * 2 1 4 4 N 1.31790 * 120.89148 * 180.02562 * 3 2 1 5 5 C 1.31830 * 122.05246 * 359.97438 * 4 3 2 6 6 C 1.38131 * 120.89532 * 0.02562 * 5 4 3 7 7 C 1.39789 * 120.50028 * 180.02562 * 2 1 3 8 8 C 1.48157 * 120.92390 * 359.97438 * 7 2 1 9 9 O 1.21515 * 119.99992 * 315.76435 * 8 7 2 10 10 N 1.34778 * 119.99855 * 135.75689 * 8 7 2 11 11 C 1.46500 * 120.00127 * 3.80281 * 10 8 7 12 12 C 1.46499 * 119.99603 * 183.79877 * 10 8 7 13 13 C 1.53008 * 109.47036 * 90.00562 * 12 10 8 14 14 H 1.08998 * 109.47146 * 64.99630 * 13 12 10 15 15 C 1.52994 * 109.46850 * 184.99858 * 13 12 10 16 16 N 1.46898 * 109.46793 * 304.99482 * 13 12 10 17 17 C 1.46904 * 110.99823 * 154.99857 * 16 13 12 18 18 C 1.50705 * 109.46896 * 179.97438 * 17 16 13 19 19 O 1.21291 * 120.00306 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99596 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99821 * 179.97438 * 20 18 17 22 22 H 1.08007 * 119.99635 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00079 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99816 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00000 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47122 * 90.00105 * 25 23 21 27 27 H 1.48504 * 109.46690 * 210.00215 * 25 23 21 28 28 H 1.48500 * 109.47000 * 329.99668 * 25 23 21 29 29 H 1.09003 * 109.47053 * 272.44416 * 1 2 3 30 30 H 1.09002 * 109.47446 * 32.44041 * 1 2 3 31 31 H 1.09004 * 109.47167 * 152.44623 * 1 2 3 32 32 H 1.07992 * 119.55131 * 0.03858 * 3 2 1 33 33 H 1.07998 * 119.55426 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.49540 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.46945 * 84.74091 * 11 10 8 36 36 H 1.08997 * 109.46917 * 204.74213 * 11 10 8 37 37 H 1.09000 * 109.46698 * 324.73930 * 11 10 8 38 38 H 1.09004 * 109.47012 * 210.00052 * 12 10 8 39 39 H 1.08998 * 109.47438 * 330.00636 * 12 10 8 40 40 H 1.09004 * 109.46943 * 180.02562 * 15 13 12 41 41 H 1.09002 * 109.47301 * 299.99288 * 15 13 12 42 42 H 1.08998 * 109.47432 * 59.99947 * 15 13 12 43 43 H 1.00909 * 111.00198 * 31.04579 * 16 13 12 44 44 H 1.08992 * 109.47024 * 300.00178 * 17 16 13 45 45 H 1.09000 * 109.46927 * 60.00617 * 17 16 13 46 46 H 0.96998 * 119.99996 * 0.02562 * 20 18 17 47 47 H 0.97001 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2082 1.1906 0.0000 4 7 3.5261 1.1997 -0.0005 5 6 4.2334 0.0872 -0.0005 6 6 3.6137 -1.1473 -0.0006 7 6 2.2165 -1.2045 -0.0005 8 6 1.5078 -2.5055 -0.0006 9 8 0.5554 -2.6786 0.7339 10 7 1.9195 -3.4971 -0.8153 11 6 3.1173 -3.3181 -1.6397 12 6 1.1693 -4.7539 -0.8764 13 6 0.0955 -4.6546 -1.9619 14 1 0.5725 -4.5557 -2.9369 15 6 -0.7679 -5.9175 -1.9422 16 7 -0.7494 -3.4798 -1.7087 17 6 -1.3690 -2.9994 -2.9511 18 6 -2.2266 -1.7968 -2.6522 19 8 -2.3129 -1.3805 -1.5163 20 7 -2.8979 -1.1838 -3.6474 21 6 -3.6785 -0.0901 -3.3755 22 1 -3.7552 0.2805 -2.3639 23 6 -4.3709 0.5416 -4.4013 24 7 -4.2779 0.0903 -5.6319 25 14 -5.4340 2.0323 -4.0309 26 1 -4.6176 3.2662 -4.1574 27 1 -6.5641 2.0855 -4.9928 28 1 -5.9655 1.9299 -2.6480 29 1 -0.3633 0.0438 1.0268 30 1 -0.3634 0.8673 -0.5513 31 1 -0.3634 -0.9111 -0.4754 32 1 1.6691 2.1263 0.0006 33 1 5.3120 0.1417 -0.0014 34 1 4.1995 -2.0546 -0.0010 35 1 4.0020 -3.5680 -1.0541 36 1 3.0606 -3.9723 -2.5096 37 1 3.1802 -2.2808 -1.9686 38 1 1.8497 -5.5722 -1.1124 39 1 0.6956 -4.9416 0.0871 40 1 -1.5326 -5.8469 -2.7157 41 1 -0.1410 -6.7892 -2.1300 42 1 -1.2450 -6.0163 -0.9671 43 1 -0.2226 -2.7455 -1.2599 44 1 -0.5905 -2.7234 -3.6622 45 1 -1.9874 -3.7892 -3.3776 46 1 -2.8292 -1.5170 -4.5557 47 1 -4.7616 0.5310 -6.3480 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725488369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:12:29 Heat of formation + Delta-G solvation = -46.703767 kcal Electronic energy + Delta-G solvation = -30062.535121 eV Core-core repulsion = 26051.774822 eV Total energy + Delta-G solvation = -4010.760299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07326 -40.54547 -39.99308 -37.92654 -36.34015 -35.80935 -34.54988 -33.38228 -33.14284 -32.01300 -28.71449 -28.39122 -28.00954 -27.27505 -25.82101 -24.90362 -23.30259 -21.72359 -21.15335 -20.66883 -19.91450 -18.70527 -18.16308 -17.96415 -17.31860 -17.00503 -16.48996 -16.46823 -16.34887 -16.01825 -15.86735 -15.52191 -15.31528 -14.86471 -14.64877 -14.39726 -14.27308 -14.21547 -13.76365 -13.75261 -13.50610 -13.39349 -13.30328 -13.09311 -13.00896 -12.87055 -12.61404 -12.52599 -12.48720 -12.39761 -12.13315 -11.97158 -11.48004 -11.41825 -10.81065 -10.42740 -10.28166 -10.00913 -9.96702 -9.75928 -9.30428 -8.46195 -5.93835 -0.25492 0.03707 1.36381 1.40055 1.51989 1.52759 1.86545 2.05226 2.28386 2.71286 2.93167 3.20844 3.25604 3.45134 3.48433 3.75313 3.77144 3.87046 3.94210 4.13615 4.19635 4.24429 4.34929 4.39553 4.42916 4.46867 4.54318 4.56483 4.61477 4.65947 4.74511 4.78369 4.85342 4.87077 4.93606 5.05292 5.10590 5.30951 5.35630 5.42252 5.50893 5.59616 5.92242 6.11280 6.17914 6.45367 6.61933 6.86977 6.96603 7.14069 7.56651 8.13076 8.71551 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.004070 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.991200 B = 6877.370073 C = 8842.421539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C 0.088 3.912 4 N -0.483 5.483 5 C 0.088 3.912 6 C -0.125 4.125 7 C -0.105 4.105 8 C 0.546 3.454 9 O -0.543 6.543 10 N -0.611 5.611 11 C 0.062 3.938 12 C 0.113 3.887 13 C 0.061 3.939 14 H 0.059 0.941 15 C -0.133 4.133 16 N -0.683 5.683 17 C 0.062 3.938 18 C 0.434 3.566 19 O -0.603 6.603 20 N -0.574 5.574 21 C -0.327 4.327 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.922 5.922 25 Si 0.989 3.011 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.275 1.275 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.168 0.832 33 H 0.202 0.798 34 H 0.180 0.820 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.342 0.658 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.511 -9.823 4.066 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.068 4.068 4 N -0.192 5.192 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.116 4.116 8 C 0.334 3.666 9 O -0.420 6.420 10 N -0.345 5.345 11 C -0.079 4.079 12 C -0.009 4.009 13 C -0.050 4.050 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.321 5.321 17 C -0.071 4.071 18 C 0.221 3.779 19 O -0.488 6.488 20 N -0.211 5.211 21 C -0.457 4.457 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.813 3.187 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.200 1.200 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.218 0.782 34 H 0.197 0.803 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.166 0.834 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.228 0.772 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.781 -9.162 5.228 23.305 hybrid contribution -0.959 0.432 -0.833 1.341 sum 19.822 -8.730 4.395 22.101 Atomic orbital electron populations 1.20735 0.90100 1.03673 1.02198 1.21119 0.97360 0.93843 0.97805 1.22801 0.90139 0.97390 0.96477 1.67609 1.07763 1.33195 1.10646 1.23423 1.02113 0.86493 0.94866 1.22795 0.91960 1.01953 0.97763 1.20323 0.95620 0.92660 1.03027 1.18622 0.83101 0.84316 0.80565 1.90887 1.28217 1.81777 1.41105 1.47928 1.29234 1.15053 1.42236 1.22391 0.86060 1.03484 0.95948 1.21920 0.93754 0.85552 0.99687 1.22168 0.92924 0.91641 0.98224 0.92276 1.21727 0.99742 0.95808 1.01875 1.60261 1.38330 1.10656 1.22886 1.21610 0.97516 0.95456 0.92517 1.20813 0.84587 0.87045 0.85430 1.90506 1.67691 1.68264 1.22374 1.41904 1.42208 1.27466 1.09571 1.19629 1.24031 1.06428 0.95597 0.90385 1.25981 0.99023 1.01749 0.94420 1.69671 1.43806 1.42493 1.00338 0.84979 0.77847 0.77821 0.78021 1.19560 1.19549 1.19963 0.91473 0.92090 0.91216 0.81457 0.78158 0.80259 0.88653 0.88374 0.91606 0.84827 0.90936 0.93227 0.89041 0.93372 0.83384 0.92724 0.88107 0.77246 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.23 9.07 71.24 0.65 -3.58 16 2 C -0.10 -3.07 5.93 -19.50 -0.12 -3.18 16 3 C 0.09 2.41 10.87 84.68 0.92 3.33 16 4 N -0.48 -11.66 10.33 -196.01 -2.03 -13.68 16 5 C 0.09 1.49 11.17 84.67 0.95 2.44 16 6 C -0.13 -2.13 7.82 22.63 0.18 -1.95 16 7 C -0.11 -2.80 5.06 -19.88 -0.10 -2.91 16 8 C 0.55 16.07 4.95 86.88 0.43 16.50 16 9 O -0.54 -21.22 13.88 -3.76 -0.05 -21.28 16 10 N -0.61 -12.60 2.66 -849.83 -2.26 -14.86 16 11 C 0.06 0.68 9.00 127.77 1.15 1.83 16 12 C 0.11 2.20 5.19 86.38 0.45 2.65 16 13 C 0.06 1.44 2.95 44.92 0.13 1.57 16 14 H 0.06 1.20 7.80 -2.39 -0.02 1.19 16 15 C -0.13 -2.78 9.41 71.98 0.68 -2.10 16 16 N -0.68 -24.34 5.87 -495.57 -2.91 -27.25 16 17 C 0.06 2.31 5.97 85.56 0.51 2.82 16 18 C 0.43 21.61 7.82 87.66 0.69 22.29 16 19 O -0.60 -34.22 13.85 -3.06 -0.04 -34.27 16 20 N -0.57 -30.28 5.29 -306.97 -1.62 -31.90 16 21 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.53 13.05 21.66 0.28 -50.25 16 25 Si 0.99 43.91 29.55 68.60 2.03 45.94 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 31 H 0.07 3.13 3.34 -2.38 -0.01 3.12 16 32 H 0.17 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.20 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.18 1.56 5.94 -2.91 -0.02 1.54 16 35 H 0.10 0.43 6.94 -2.39 -0.02 0.41 16 36 H 0.10 0.69 8.03 -2.39 -0.02 0.67 16 37 H 0.07 0.87 6.17 -2.39 -0.01 0.85 16 38 H 0.13 1.32 8.07 -2.38 -0.02 1.30 16 39 H 0.07 1.81 7.37 -2.39 -0.02 1.80 16 40 H 0.05 1.13 7.45 -2.38 -0.02 1.11 16 41 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.34 13.28 2.98 -89.69 -0.27 13.02 16 44 H 0.05 1.83 8.05 -2.39 -0.02 1.81 16 45 H 0.10 3.43 7.44 -2.39 -0.02 3.42 16 46 H 0.39 19.84 7.90 -92.71 -0.73 19.11 16 47 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -79.99 377.80 1.21 -78.78 By element: Atomic # 1 Polarization: 47.37 SS G_CDS: 0.02 Total: 47.39 kcal Atomic # 6 Polarization: 13.59 SS G_CDS: 7.79 Total: 21.38 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -8.54 Total: -137.94 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.09 Total: -55.54 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -79.99 1.21 -78.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725488369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.078 kcal (2) G-P(sol) polarization free energy of solvation -79.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds