Wall clock time and date at job start Tue Mar 31 2020 19:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32168 * 119.14168 * 2 1 4 4 C 1.32365 * 120.60508 * 180.02562 * 3 2 1 5 5 C 1.47497 * 120.51100 * 179.97438 * 4 3 2 6 6 O 1.21600 * 120.00294 * 179.97438 * 5 4 3 7 7 N 1.34776 * 120.00152 * 359.95439 * 5 4 3 8 8 C 1.47427 * 125.64703 * 354.94189 * 7 5 4 9 9 C 1.55129 * 104.72147 * 155.81605 * 8 7 5 10 10 C 1.55156 * 101.48596 * 37.29743 * 9 8 7 11 11 C 1.47017 * 125.65016 * 175.24909 * 7 5 4 12 12 H 1.09003 * 109.88748 * 300.44173 * 11 7 5 13 13 C 1.52998 * 109.88154 * 61.60779 * 11 7 5 14 14 N 1.46500 * 109.47278 * 185.63613 * 13 11 7 15 15 C 1.46504 * 120.00121 * 274.51805 * 14 13 11 16 16 C 1.36938 * 119.99933 * 94.51569 * 14 13 11 17 17 H 1.08004 * 119.99883 * 24.77647 * 16 14 13 18 18 C 1.38811 * 120.00329 * 204.76923 * 16 14 13 19 19 N 1.31618 * 119.99801 * 6.23614 * 18 16 14 20 20 Si 1.86797 * 120.00447 * 186.22818 * 18 16 14 21 21 H 1.48499 * 109.46911 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47305 * 120.00570 * 20 18 16 23 23 H 1.48501 * 109.47238 * 240.00544 * 20 18 16 24 24 C 1.46681 * 118.98090 * 359.95296 * 4 3 2 25 25 O 1.21853 * 120.78233 * 180.29949 * 24 4 3 26 26 N 1.35158 * 118.43163 * 0.02562 * 24 4 3 27 27 H 0.96997 * 120.36320 * 179.97438 * 26 24 4 28 28 C 1.34895 * 119.26267 * 0.02562 * 26 24 4 29 29 C 1.50700 * 119.49932 * 179.97438 * 28 26 24 30 30 H 1.08998 * 109.46939 * 270.02337 * 1 2 3 31 31 H 1.09000 * 109.46610 * 30.02627 * 1 2 3 32 32 H 1.08997 * 109.47044 * 150.01957 * 1 2 3 33 33 H 1.08994 * 110.36738 * 274.74794 * 8 7 5 34 34 H 1.09007 * 110.36483 * 37.06978 * 8 7 5 35 35 H 1.09000 * 111.19185 * 279.19149 * 9 8 7 36 36 H 1.09006 * 110.90103 * 155.27831 * 9 8 7 37 37 H 1.09001 * 110.71802 * 205.96524 * 10 9 8 38 38 H 1.08996 * 110.87116 * 82.76325 * 10 9 8 39 39 H 1.09000 * 109.47215 * 305.63451 * 13 11 7 40 40 H 1.09005 * 109.47386 * 65.63976 * 13 11 7 41 41 H 1.08998 * 109.46825 * 95.04805 * 15 14 13 42 42 H 1.08997 * 109.46906 * 215.04453 * 15 14 13 43 43 H 1.08995 * 109.47115 * 335.04723 * 15 14 13 44 44 H 0.97004 * 120.00603 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.46738 * 359.97438 * 29 28 26 46 46 H 1.09003 * 109.47124 * 120.00242 * 29 28 26 47 47 H 1.09001 * 109.46721 * 240.00137 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4739 1.1882 -0.0005 5 6 4.1900 2.4776 -0.0011 6 8 5.4059 2.4979 -0.0011 7 7 3.4969 3.6335 -0.0020 8 6 2.0316 3.7565 -0.1082 9 6 1.7025 5.1245 0.5452 10 6 2.9065 5.9861 0.0812 11 6 4.0772 4.9807 0.0963 12 1 4.6362 5.0766 1.0271 13 6 4.9996 5.2382 -1.0969 14 7 5.6759 6.5260 -0.9223 15 6 5.0200 7.7625 -1.3547 16 6 6.9213 6.5738 -0.3548 17 1 7.5685 5.7103 -0.3992 18 6 7.3520 7.7321 0.2774 19 7 6.5220 8.7406 0.4398 20 14 9.1093 7.8595 0.8979 21 1 9.8340 6.5996 0.5939 22 1 9.7900 8.9959 0.2268 23 1 9.1009 8.0845 2.3657 24 6 4.2171 -0.0764 0.0000 25 8 5.4356 -0.0836 0.0050 26 7 3.5185 -1.2334 0.0004 27 1 3.9815 -2.0857 0.0004 28 6 2.1702 -1.1896 -0.0002 29 6 1.3860 -2.4764 -0.0003 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5135 33 1 1.7251 3.7495 -1.1541 34 1 1.5426 2.9489 0.4367 35 1 1.6743 5.0454 1.6320 36 1 0.7644 5.5239 0.1597 37 1 3.0894 6.8016 0.7809 38 1 2.7428 6.3724 -0.9248 39 1 5.7426 4.4432 -1.1600 40 1 4.4105 5.2587 -2.0138 41 1 4.5034 8.2149 -0.5083 42 1 5.7688 8.4566 -1.7365 43 1 4.3000 7.5361 -2.1411 44 1 6.8229 9.5503 0.8813 45 1 2.0745 -3.3214 -0.0003 46 1 0.7577 -2.5191 0.8895 47 1 0.7585 -2.5194 -0.8906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733933250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:40 Heat of formation + Delta-G solvation = 12.905761 kcal Electronic energy + Delta-G solvation = -29882.841931 eV Core-core repulsion = 25874.666494 eV Total energy + Delta-G solvation = -4008.175436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96111 -39.55808 -38.18087 -36.97584 -35.70076 -35.06008 -33.42723 -31.44604 -31.03428 -29.54272 -28.74843 -26.99500 -25.94418 -25.09199 -24.73652 -23.74574 -22.23929 -20.85810 -20.53352 -19.39724 -18.72900 -18.01732 -16.72546 -16.57901 -16.41785 -15.95800 -15.68716 -14.92639 -14.46647 -14.37311 -14.35196 -14.02433 -13.67632 -13.55929 -13.45281 -13.40291 -13.16100 -12.87800 -12.73932 -12.45051 -12.35289 -12.08731 -11.80872 -11.65300 -11.54284 -11.45952 -11.18941 -10.75308 -10.65542 -10.52028 -10.38560 -10.14153 -10.03899 -9.82541 -9.72104 -9.51987 -9.15364 -8.42558 -8.29587 -8.03600 -6.56168 -5.57483 -3.03557 -0.06776 1.44614 2.14927 2.75423 3.23414 3.50008 3.56624 3.62264 3.65947 3.71868 3.95504 3.98973 4.29819 4.66046 4.69794 4.75901 4.89722 5.03545 5.09030 5.13775 5.26307 5.30879 5.39438 5.49234 5.58381 5.72072 5.81131 5.87580 5.98069 6.02879 6.10931 6.12544 6.21580 6.31963 6.50042 6.54922 6.69258 6.82077 6.89916 7.02765 7.25684 7.29011 7.54183 7.56936 7.87856 7.98655 8.01870 8.56338 8.62607 9.42060 10.03088 10.52329 11.47428 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003230 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.510880 B = 8665.711911 C = 9868.418965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.035 4.035 3 N -0.351 5.351 4 C 0.026 3.974 5 C 0.583 3.417 6 O -0.498 6.498 7 N -0.593 5.593 8 C 0.097 3.903 9 C -0.138 4.138 10 C -0.114 4.114 11 C 0.117 3.883 12 H 0.079 0.921 13 C 0.144 3.856 14 N -0.596 5.596 15 C 0.165 3.835 16 C -0.243 4.243 17 H 0.070 0.930 18 C 0.000 4.000 19 N -0.913 5.913 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.495 3.505 25 O -0.477 6.477 26 N -0.588 5.588 27 H 0.420 0.580 28 C 0.146 3.854 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.032 0.968 42 H 0.042 0.958 43 H -0.007 1.007 44 H 0.249 0.751 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.585 -22.202 -0.991 30.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.160 4.160 3 N -0.069 5.069 4 C -0.143 4.143 5 C 0.367 3.633 6 O -0.371 6.371 7 N -0.327 5.327 8 C -0.026 4.026 9 C -0.177 4.177 10 C -0.152 4.152 11 C 0.012 3.988 12 H 0.097 0.903 13 C 0.016 3.984 14 N -0.319 5.319 15 C 0.021 3.979 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.197 4.197 19 N -0.559 5.559 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.286 3.714 25 O -0.348 6.348 26 N -0.224 5.224 27 H 0.260 0.740 28 C 0.031 3.969 29 C -0.183 4.183 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.011 0.989 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -19.572 -21.288 -0.937 28.933 hybrid contribution 1.422 -1.008 0.515 1.817 sum -18.150 -22.295 -0.422 28.752 Atomic orbital electron populations 1.20520 0.87019 1.03675 1.02970 1.20213 0.97934 0.85843 1.12038 1.67827 1.08439 1.28370 1.02239 1.24132 0.88771 0.94051 1.07347 1.16640 0.86177 0.81097 0.79343 1.90943 1.11911 1.85621 1.48583 1.48492 1.07943 1.05596 1.70693 1.22716 0.80847 0.98406 1.00674 1.22892 0.98747 0.95411 1.00613 1.22615 0.92848 0.97365 1.02332 1.22768 0.94996 0.78121 1.02898 0.90326 1.21209 0.94320 0.89899 0.92970 1.43923 1.16715 1.00802 1.70458 1.20856 0.94629 0.87654 0.94790 1.19371 0.90433 0.99448 1.28034 0.91214 1.25074 0.98145 0.97665 0.98847 1.70053 1.33423 1.05497 1.46962 0.86172 0.84708 0.77489 0.78252 1.20224 1.21829 1.21787 1.19110 0.88485 0.83937 0.79884 1.91087 1.11387 1.85154 1.47145 1.43776 1.06334 1.11933 1.60374 0.74013 1.21492 0.83556 0.98876 0.92997 1.21181 1.00445 0.91517 1.05191 0.90804 0.90134 0.90868 0.92089 0.88077 0.91224 0.90596 0.89964 0.90978 0.91829 0.94993 0.95011 0.93909 0.98882 0.94038 0.90443 0.88250 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 9.65 36.01 0.35 -0.03 16 2 C -0.03 -0.29 6.70 -83.18 -0.56 -0.84 16 3 N -0.35 -4.25 6.60 -4.84 -0.03 -4.28 16 4 C 0.03 0.41 6.92 -80.46 -0.56 -0.15 16 5 C 0.58 11.60 7.65 -12.49 -0.10 11.50 16 6 O -0.50 -12.21 14.29 -15.20 -0.22 -12.43 16 7 N -0.59 -10.83 3.06 -164.11 -0.50 -11.33 16 8 C 0.10 1.34 6.17 -2.41 -0.01 1.32 16 9 C -0.14 -1.85 7.10 -24.46 -0.17 -2.02 16 10 C -0.11 -1.99 5.28 -24.90 -0.13 -2.13 16 11 C 0.12 2.44 3.14 -66.95 -0.21 2.23 16 12 H 0.08 1.93 8.14 -51.93 -0.42 1.50 16 13 C 0.14 3.41 5.22 -4.04 -0.02 3.39 16 14 N -0.60 -16.07 2.88 -181.12 -0.52 -16.59 16 15 C 0.17 4.20 7.59 59.85 0.45 4.66 16 16 C -0.24 -7.23 9.65 -15.06 -0.15 -7.38 16 17 H 0.07 2.13 7.81 -52.48 -0.41 1.72 16 18 C 0.00 0.00 5.23 -17.43 -0.09 -0.09 16 19 N -0.91 -27.40 10.47 55.49 0.58 -26.82 16 20 Si 0.90 23.45 29.56 -169.99 -5.02 18.42 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 C 0.49 7.42 7.93 -12.68 -0.10 7.32 16 25 O -0.48 -9.32 16.40 -15.42 -0.25 -9.57 16 26 N -0.59 -5.20 5.29 -9.45 -0.05 -5.25 16 27 H 0.42 2.46 8.64 -40.82 -0.35 2.10 16 28 C 0.15 0.93 6.78 -81.98 -0.56 0.38 16 29 C -0.13 -0.18 8.83 36.01 0.32 0.13 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.14 6.43 -51.93 -0.33 -0.20 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.27 5.60 -51.93 -0.29 0.97 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.58 8.07 -51.93 -0.42 1.16 16 38 H 0.07 1.26 6.99 -51.93 -0.36 0.90 16 39 H 0.06 1.66 6.38 -51.93 -0.33 1.33 16 40 H 0.03 0.70 7.80 -51.93 -0.40 0.30 16 41 H 0.03 0.84 7.06 -51.93 -0.37 0.48 16 42 H 0.04 1.18 7.27 -51.93 -0.38 0.80 16 43 H -0.01 -0.16 7.62 -51.93 -0.40 -0.56 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.08 0.02 7.90 -51.93 -0.41 -0.39 16 46 H 0.10 0.03 8.09 -51.93 -0.42 -0.39 16 47 H 0.10 0.02 7.37 -51.93 -0.38 -0.36 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -38.71 373.88 -8.85 -47.56 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -6.93 Total: -3.62 kcal Atomic # 6 Polarization: 19.82 SS G_CDS: -1.53 Total: 18.29 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -0.53 Total: -64.28 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.47 Total: -22.00 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.42 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.71 -8.85 -47.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733933250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.465 kcal (2) G-P(sol) polarization free energy of solvation -38.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds