Wall clock time and date at job start Tue Mar 31 2020 19:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32168 * 119.14168 * 2 1 4 4 C 1.32365 * 120.60508 * 180.02562 * 3 2 1 5 5 C 1.47497 * 120.51100 * 179.97438 * 4 3 2 6 6 O 1.21600 * 120.00294 * 179.97438 * 5 4 3 7 7 N 1.34776 * 120.00152 * 359.95439 * 5 4 3 8 8 C 1.47427 * 125.64703 * 354.94189 * 7 5 4 9 9 C 1.55129 * 104.72147 * 155.81605 * 8 7 5 10 10 C 1.55156 * 101.48596 * 37.29743 * 9 8 7 11 11 C 1.47017 * 125.65016 * 175.24909 * 7 5 4 12 12 H 1.09003 * 109.88748 * 300.44173 * 11 7 5 13 13 C 1.52998 * 109.88154 * 61.60779 * 11 7 5 14 14 N 1.46500 * 109.47278 * 185.63613 * 13 11 7 15 15 C 1.46504 * 120.00121 * 274.51805 * 14 13 11 16 16 C 1.36938 * 119.99933 * 94.51569 * 14 13 11 17 17 H 1.08004 * 119.99883 * 24.77647 * 16 14 13 18 18 C 1.38811 * 120.00329 * 204.76923 * 16 14 13 19 19 N 1.31618 * 119.99801 * 6.23614 * 18 16 14 20 20 Si 1.86797 * 120.00447 * 186.22818 * 18 16 14 21 21 H 1.48499 * 109.46911 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47305 * 120.00570 * 20 18 16 23 23 H 1.48501 * 109.47238 * 240.00544 * 20 18 16 24 24 C 1.46681 * 118.98090 * 359.95296 * 4 3 2 25 25 O 1.21853 * 120.78233 * 180.29949 * 24 4 3 26 26 N 1.35158 * 118.43163 * 0.02562 * 24 4 3 27 27 H 0.96997 * 120.36320 * 179.97438 * 26 24 4 28 28 C 1.34895 * 119.26267 * 0.02562 * 26 24 4 29 29 C 1.50700 * 119.49932 * 179.97438 * 28 26 24 30 30 H 1.08998 * 109.46939 * 270.02337 * 1 2 3 31 31 H 1.09000 * 109.46610 * 30.02627 * 1 2 3 32 32 H 1.08997 * 109.47044 * 150.01957 * 1 2 3 33 33 H 1.08994 * 110.36738 * 274.74794 * 8 7 5 34 34 H 1.09007 * 110.36483 * 37.06978 * 8 7 5 35 35 H 1.09000 * 111.19185 * 279.19149 * 9 8 7 36 36 H 1.09006 * 110.90103 * 155.27831 * 9 8 7 37 37 H 1.09001 * 110.71802 * 205.96524 * 10 9 8 38 38 H 1.08996 * 110.87116 * 82.76325 * 10 9 8 39 39 H 1.09000 * 109.47215 * 305.63451 * 13 11 7 40 40 H 1.09005 * 109.47386 * 65.63976 * 13 11 7 41 41 H 1.08998 * 109.46825 * 95.04805 * 15 14 13 42 42 H 1.08997 * 109.46906 * 215.04453 * 15 14 13 43 43 H 1.08995 * 109.47115 * 335.04723 * 15 14 13 44 44 H 0.97004 * 120.00603 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.46738 * 359.97438 * 29 28 26 46 46 H 1.09003 * 109.47124 * 120.00242 * 29 28 26 47 47 H 1.09001 * 109.46721 * 240.00137 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4739 1.1882 -0.0005 5 6 4.1900 2.4776 -0.0011 6 8 5.4059 2.4979 -0.0011 7 7 3.4969 3.6335 -0.0020 8 6 2.0316 3.7565 -0.1082 9 6 1.7025 5.1245 0.5452 10 6 2.9065 5.9861 0.0812 11 6 4.0772 4.9807 0.0963 12 1 4.6362 5.0766 1.0271 13 6 4.9996 5.2382 -1.0969 14 7 5.6759 6.5260 -0.9223 15 6 5.0200 7.7625 -1.3547 16 6 6.9213 6.5738 -0.3548 17 1 7.5685 5.7103 -0.3992 18 6 7.3520 7.7321 0.2774 19 7 6.5220 8.7406 0.4398 20 14 9.1093 7.8595 0.8979 21 1 9.8340 6.5996 0.5939 22 1 9.7900 8.9959 0.2268 23 1 9.1009 8.0845 2.3657 24 6 4.2171 -0.0764 0.0000 25 8 5.4356 -0.0836 0.0050 26 7 3.5185 -1.2334 0.0004 27 1 3.9815 -2.0857 0.0004 28 6 2.1702 -1.1896 -0.0002 29 6 1.3860 -2.4764 -0.0003 30 1 -0.3633 0.0004 1.0277 31 1 -0.3632 0.8898 -0.5143 32 1 -0.3633 -0.8901 -0.5135 33 1 1.7251 3.7495 -1.1541 34 1 1.5426 2.9489 0.4367 35 1 1.6743 5.0454 1.6320 36 1 0.7644 5.5239 0.1597 37 1 3.0894 6.8016 0.7809 38 1 2.7428 6.3724 -0.9248 39 1 5.7426 4.4432 -1.1600 40 1 4.4105 5.2587 -2.0138 41 1 4.5034 8.2149 -0.5083 42 1 5.7688 8.4566 -1.7365 43 1 4.3000 7.5361 -2.1411 44 1 6.8229 9.5503 0.8813 45 1 2.0745 -3.3214 -0.0003 46 1 0.7577 -2.5191 0.8895 47 1 0.7585 -2.5194 -0.8906 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733933250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:39 Heat of formation + Delta-G solvation = -16.020613 kcal Electronic energy + Delta-G solvation = -29884.096272 eV Core-core repulsion = 25874.666494 eV Total energy + Delta-G solvation = -4009.429778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.89505 -40.99427 -39.25652 -38.50390 -37.12097 -36.57785 -34.18040 -33.48159 -32.42205 -30.68944 -29.83890 -28.08852 -27.81376 -26.75866 -25.57956 -24.98299 -23.48690 -22.69700 -21.86930 -20.63691 -19.71697 -19.14354 -18.77395 -17.83445 -17.57689 -17.23690 -16.85968 -16.76652 -16.07573 -15.57642 -15.39873 -15.15181 -15.03049 -14.97517 -14.74657 -14.32431 -14.15331 -13.90355 -13.79100 -13.68207 -13.55280 -13.31873 -13.09345 -12.82033 -12.77276 -12.67764 -12.55006 -12.47674 -12.35037 -12.31683 -12.09113 -11.98593 -11.83691 -11.56515 -11.51097 -11.12858 -10.68231 -10.34719 -9.69526 -9.05466 -8.73689 -7.86313 -5.35475 -0.95548 0.51648 1.22483 1.38928 1.40217 1.52650 1.57680 2.02093 2.47704 2.55193 2.90903 3.00936 3.26639 3.43022 3.66121 3.70574 3.78963 3.85343 4.00997 4.11525 4.39758 4.46888 4.54537 4.55473 4.66220 4.69492 4.82689 4.87296 4.92198 5.00117 5.02259 5.08128 5.10330 5.12088 5.17417 5.22474 5.24408 5.29159 5.35381 5.43761 5.55793 5.59256 5.62872 5.75911 6.31337 6.40275 6.56057 6.64554 7.14648 7.18967 7.83980 8.26660 9.16023 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.003230 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.510880 B = 8665.711911 C = 9868.418965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.050 4.050 3 N -0.329 5.329 4 C -0.057 4.057 5 C 0.576 3.424 6 O -0.570 6.570 7 N -0.596 5.596 8 C 0.099 3.901 9 C -0.121 4.121 10 C -0.106 4.106 11 C 0.125 3.875 12 H 0.026 0.974 13 C 0.152 3.848 14 N -0.612 5.612 15 C 0.182 3.818 16 C -0.265 4.265 17 H 0.046 0.954 18 C -0.043 4.043 19 N -0.929 5.929 20 Si 0.965 3.035 21 H -0.281 1.281 22 H -0.279 1.279 23 H -0.286 1.286 24 C 0.489 3.511 25 O -0.546 6.546 26 N -0.564 5.564 27 H 0.437 0.563 28 C 0.199 3.801 29 C -0.130 4.130 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.025 0.975 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.015 0.985 43 H 0.028 0.972 44 H 0.251 0.749 45 H 0.098 0.902 46 H 0.131 0.869 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.741 -25.492 -1.161 36.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.181 4.181 3 N -0.047 5.047 4 C -0.217 4.217 5 C 0.364 3.636 6 O -0.448 6.448 7 N -0.329 5.329 8 C -0.022 4.022 9 C -0.159 4.159 10 C -0.144 4.144 11 C 0.020 3.980 12 H 0.044 0.956 13 C 0.024 3.976 14 N -0.335 5.335 15 C 0.038 3.962 16 C -0.396 4.396 17 H 0.064 0.936 18 C -0.238 4.238 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.207 1.207 22 H -0.205 1.205 23 H -0.212 1.212 24 C 0.284 3.716 25 O -0.423 6.423 26 N -0.198 5.198 27 H 0.281 0.719 28 C 0.079 3.921 29 C -0.186 4.186 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.095 0.905 34 H 0.138 0.862 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.034 0.966 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.149 0.851 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -24.763 -24.564 -1.114 34.898 hybrid contribution 2.697 -0.405 0.540 2.780 sum -22.067 -24.969 -0.574 33.328 Atomic orbital electron populations 1.20730 0.83244 1.05482 1.04524 1.21180 1.00098 0.85175 1.11639 1.67633 1.06687 1.30862 0.99505 1.22939 0.89796 0.92024 1.16967 1.17357 0.85786 0.82855 0.77570 1.90874 1.15063 1.86968 1.51910 1.48508 1.09782 1.04126 1.70518 1.22977 0.77883 0.99361 1.02009 1.22909 0.98313 0.93774 1.00925 1.22478 0.93318 0.96271 1.02358 1.22253 0.95826 0.81277 0.98686 0.95583 1.21111 0.93943 0.87491 0.95029 1.44045 1.16562 1.02177 1.70738 1.20632 0.94067 0.86440 0.95048 1.19393 0.91822 0.99143 1.29210 0.93599 1.25729 1.01923 0.97224 0.98943 1.70178 1.34719 1.05592 1.47067 0.85240 0.80320 0.77360 0.77772 1.20675 1.20518 1.21207 1.19061 0.87800 0.85223 0.79552 1.91038 1.13987 1.86158 1.51111 1.43748 1.07589 1.11235 1.57249 0.71905 1.22622 0.82286 1.01305 0.85861 1.21609 1.00810 0.88382 1.07838 0.89284 0.90511 0.87047 0.90543 0.86228 0.90956 0.86445 0.92067 0.90286 0.95664 0.93037 0.96299 0.96611 0.95334 0.93974 0.88358 0.85138 0.84928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 9.65 71.24 0.69 0.47 16 2 C -0.05 -0.61 6.70 42.03 0.28 -0.32 16 3 N -0.33 -7.46 6.60 -169.23 -1.12 -8.58 16 4 C -0.06 -1.90 6.92 43.71 0.30 -1.60 16 5 C 0.58 25.33 7.65 86.68 0.66 25.99 16 6 O -0.57 -31.82 14.29 15.54 0.22 -31.59 16 7 N -0.60 -23.27 3.06 -791.37 -2.42 -25.69 16 8 C 0.10 2.63 6.17 86.93 0.54 3.17 16 9 C -0.12 -3.02 7.10 32.06 0.23 -2.79 16 10 C -0.11 -3.80 5.28 31.78 0.17 -3.63 16 11 C 0.13 5.67 3.14 45.34 0.14 5.81 16 12 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 13 C 0.15 7.76 5.22 86.38 0.45 8.21 16 14 N -0.61 -35.12 2.88 -726.93 -2.10 -37.22 16 15 C 0.18 9.60 7.59 127.77 0.97 10.57 16 16 C -0.27 -16.93 9.65 84.03 0.81 -16.12 16 17 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 18 C -0.04 -2.64 5.23 84.86 0.44 -2.19 16 19 N -0.93 -57.67 10.47 21.65 0.23 -57.45 16 20 Si 0.97 50.31 29.56 68.60 2.03 52.34 16 21 H -0.28 -14.74 7.11 99.48 0.71 -14.04 16 22 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 24 C 0.49 15.44 7.93 86.39 0.68 16.13 16 25 O -0.55 -23.56 16.40 14.74 0.24 -23.31 16 26 N -0.56 -8.76 5.29 -301.75 -1.60 -10.36 16 27 H 0.44 3.95 8.64 -92.71 -0.80 3.15 16 28 C 0.20 1.55 6.78 41.61 0.28 1.84 16 29 C -0.13 0.63 8.83 71.24 0.63 1.26 16 30 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.08 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.11 -0.51 6.43 -2.39 -0.02 -0.53 16 33 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.12 2.75 5.60 -2.38 -0.01 2.74 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.06 2.45 8.07 -2.39 -0.02 2.43 16 38 H 0.08 2.71 6.99 -2.39 -0.02 2.69 16 39 H 0.02 1.47 6.38 -2.39 -0.02 1.45 16 40 H 0.05 2.38 7.80 -2.38 -0.02 2.36 16 41 H 0.02 1.03 7.06 -2.39 -0.02 1.02 16 42 H 0.02 0.88 7.27 -2.39 -0.02 0.86 16 43 H 0.03 1.27 7.62 -2.39 -0.02 1.25 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.10 -0.70 7.90 -2.39 -0.02 -0.72 16 46 H 0.13 -1.09 8.09 -2.39 -0.02 -1.11 16 47 H 0.13 -1.16 7.37 -2.39 -0.02 -1.18 16 Total: -1.00 -100.20 373.88 2.97 -97.23 By element: Atomic # 1 Polarization: -2.37 SS G_CDS: 0.20 Total: -2.16 kcal Atomic # 6 Polarization: 39.52 SS G_CDS: 7.28 Total: 46.80 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -7.01 Total: -139.30 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: 0.46 Total: -54.91 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.03 Total: 52.34 kcal Total: -100.20 2.97 -97.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733933250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.211 kcal (2) G-P(sol) polarization free energy of solvation -100.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds