Wall clock time and date at job start Tue Mar 31 2020 19:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38172 * 120.49985 * 2 1 4 4 N 1.31797 * 120.89521 * 179.72950 * 3 2 1 5 5 C 1.31831 * 122.04830 * 0.58353 * 4 3 2 6 6 C 1.38126 * 120.89503 * 359.67770 * 5 4 3 7 7 C 1.39800 * 120.50223 * 180.27345 * 2 1 3 8 8 C 1.48150 * 120.91807 * 359.95859 * 7 2 1 9 9 O 1.21515 * 120.00238 * 354.02981 * 8 7 2 10 10 N 1.34782 * 119.99868 * 174.02808 * 8 7 2 11 11 C 1.46497 * 120.00115 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.47368 * 325.00269 * 11 10 8 13 13 C 1.53001 * 109.46939 * 85.00141 * 11 10 8 14 14 C 1.53000 * 109.47284 * 205.00202 * 11 10 8 15 15 H 1.09000 * 109.46973 * 300.00309 * 14 11 10 16 16 C 1.53001 * 109.47183 * 60.00088 * 14 11 10 17 17 N 1.46898 * 109.47175 * 179.97438 * 14 11 10 18 18 C 1.46903 * 111.00051 * 154.99826 * 17 14 11 19 19 C 1.50699 * 109.47386 * 180.02562 * 18 17 14 20 20 O 1.21293 * 119.99880 * 359.97438 * 19 18 17 21 21 N 1.34771 * 119.99944 * 179.97438 * 19 18 17 22 22 C 1.37098 * 119.99908 * 179.97438 * 21 19 18 23 23 H 1.08000 * 119.99919 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00045 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00253 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99858 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47186 * 60.00090 * 26 24 22 28 28 H 1.48504 * 109.46941 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47333 * 299.99737 * 26 24 22 30 30 H 1.09004 * 109.47256 * 263.16163 * 1 2 3 31 31 H 1.08994 * 109.46790 * 143.16475 * 1 2 3 32 32 H 1.08995 * 109.47078 * 23.16363 * 1 2 3 33 33 H 1.07999 * 119.55256 * 0.02562 * 3 2 1 34 34 H 1.07996 * 119.55155 * 179.70771 * 5 4 3 35 35 H 1.08003 * 120.49586 * 180.02562 * 6 5 4 36 36 H 0.96994 * 119.99875 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46604 * 180.02562 * 13 11 10 38 38 H 1.09004 * 109.46798 * 299.99714 * 13 11 10 39 39 H 1.08997 * 109.47327 * 60.00300 * 13 11 10 40 40 H 1.08995 * 109.46853 * 180.02562 * 16 14 11 41 41 H 1.09009 * 109.46723 * 299.99961 * 16 14 11 42 42 H 1.08997 * 109.47327 * 59.99823 * 16 14 11 43 43 H 1.00904 * 110.99944 * 31.05140 * 17 14 11 44 44 H 1.09009 * 109.46901 * 300.00609 * 18 17 14 45 45 H 1.08998 * 109.47185 * 59.99708 * 18 17 14 46 46 H 0.97006 * 120.00351 * 359.97438 * 21 19 18 47 47 H 0.96994 * 120.00054 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1996 0.0053 5 6 4.2335 0.0871 -0.0005 6 6 3.6137 -1.1473 -0.0059 7 6 2.2166 -1.2045 -0.0057 8 6 1.5079 -2.5055 -0.0110 9 8 0.2982 -2.5389 0.0990 10 7 2.2049 -3.6521 -0.1380 11 6 1.5042 -4.9386 -0.1426 12 1 0.6497 -4.8894 0.5322 13 6 1.0178 -5.2492 -1.5596 14 6 2.4583 -6.0407 0.3221 15 1 3.3128 -6.0899 -0.3527 16 6 2.9447 -5.7301 1.7391 17 7 1.7554 -7.3306 0.3180 18 6 2.7011 -8.4450 0.1698 19 6 1.9453 -9.7487 0.1692 20 8 0.7376 -9.7495 0.2818 21 7 2.6112 -10.9136 0.0436 22 6 1.9236 -12.0997 0.0437 23 1 0.8483 -12.1005 0.1447 24 6 2.6102 -13.3008 -0.0853 25 7 3.9186 -13.2999 -0.2077 26 14 1.6731 -14.9168 -0.0859 27 1 0.7108 -14.9306 -1.2168 28 1 2.6291 -16.0432 -0.2365 29 1 0.9347 -15.0614 1.1942 30 1 -0.3634 -0.1224 1.0204 31 1 -0.3633 -0.8225 -0.6161 32 1 -0.3633 0.9448 -0.4042 33 1 1.6692 2.1263 0.0004 34 1 5.3121 0.1416 -0.0006 35 1 4.1995 -2.0546 -0.0103 36 1 3.1705 -3.6254 -0.2255 37 1 0.4961 -6.2062 -1.5630 38 1 0.3380 -4.4640 -1.8907 39 1 1.8723 -5.2985 -2.2345 40 1 3.6247 -6.5150 2.0700 41 1 3.4661 -4.7728 1.7426 42 1 2.0902 -5.6808 2.4140 43 1 1.0507 -7.3561 -0.4036 44 1 3.2430 -8.3390 -0.7702 45 1 3.4078 -8.4346 0.9995 46 1 3.5770 -10.9130 -0.0468 47 1 4.3978 -14.1384 -0.2981 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733972275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:13:19 Heat of formation + Delta-G solvation = -60.914700 kcal Electronic energy + Delta-G solvation = -27943.657311 eV Core-core repulsion = 23932.280779 eV Total energy + Delta-G solvation = -4011.376532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.86061 -40.51294 -40.06253 -38.50026 -36.08437 -35.51552 -34.41861 -33.46524 -33.21286 -31.58013 -30.79933 -28.40833 -27.98446 -25.92815 -25.91503 -24.35390 -23.14639 -21.82585 -21.48101 -21.09227 -19.92951 -19.20587 -18.00988 -17.73637 -17.08343 -16.94830 -16.45970 -16.40864 -16.25062 -16.18158 -15.83434 -15.42266 -15.22609 -15.03504 -14.69417 -14.55466 -14.32562 -14.18405 -14.11467 -13.65986 -13.55372 -13.47836 -13.35079 -13.10108 -12.89612 -12.67165 -12.62254 -12.51582 -12.42913 -12.34596 -12.12415 -11.63855 -11.50005 -11.29108 -10.91599 -10.37903 -10.33426 -10.22777 -10.01199 -9.92494 -9.35838 -8.46411 -5.94876 -0.34129 0.07750 1.39838 1.42038 1.52533 1.80364 1.86489 2.05968 2.29872 2.80454 2.95399 3.21030 3.44200 3.48782 3.50993 3.59587 3.77676 3.82376 3.93522 3.97029 4.15236 4.30885 4.40870 4.41979 4.46461 4.54483 4.59943 4.61643 4.69722 4.74339 4.77559 4.83454 4.84404 4.92758 4.99329 5.08837 5.18048 5.28618 5.38868 5.41471 5.43606 5.62905 5.89492 6.10257 6.36732 6.40874 6.60706 6.90510 7.08070 7.13144 7.56870 8.12516 8.70571 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.001819 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.861137 B =15389.306369 C =15917.603687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.090 4.090 3 C 0.089 3.911 4 N -0.488 5.488 5 C 0.083 3.917 6 C -0.127 4.127 7 C -0.109 4.109 8 C 0.557 3.443 9 O -0.556 6.556 10 N -0.698 5.698 11 C 0.151 3.849 12 H 0.074 0.926 13 C -0.166 4.166 14 C 0.083 3.917 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.679 5.679 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.273 1.273 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.415 0.585 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.346 0.654 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.627 27.379 -1.702 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.068 4.068 4 N -0.196 5.196 5 C -0.073 4.073 6 C -0.147 4.147 7 C -0.120 4.120 8 C 0.345 3.655 9 O -0.435 6.435 10 N -0.351 5.351 11 C 0.045 3.955 12 H 0.092 0.908 13 C -0.224 4.224 14 C -0.027 4.027 15 H 0.092 0.908 16 C -0.196 4.196 17 N -0.315 5.315 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.209 5.209 22 C -0.464 4.464 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.194 1.194 29 H -0.199 1.199 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.198 0.802 34 H 0.208 0.792 35 H 0.188 0.812 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.168 0.832 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.536 27.904 -0.888 28.284 hybrid contribution 0.041 -1.846 -0.902 2.055 sum 4.576 26.058 -1.790 26.517 Atomic orbital electron populations 1.20904 0.89120 1.03704 1.03200 1.21275 0.98621 0.92946 0.96464 1.23050 0.89756 0.97921 0.96114 1.67604 1.08705 1.32980 1.10360 1.23273 1.01986 0.86778 0.95286 1.22648 0.92842 1.01576 0.97603 1.20272 0.94917 0.92943 1.03913 1.18421 0.86706 0.84282 0.76135 1.90760 1.15063 1.87385 1.50284 1.45686 1.11466 1.04494 1.73405 1.20855 0.95254 0.82013 0.97333 0.90794 1.22203 1.02129 1.01851 0.96229 1.21775 0.95271 0.87201 0.98423 0.90813 1.21823 1.00932 1.01868 0.95021 1.60166 1.14792 1.00758 1.55827 1.21582 0.94296 0.87783 1.02847 1.20918 0.88260 0.86277 0.82190 1.90502 1.16384 1.87908 1.56342 1.41910 1.09838 1.04829 1.64345 1.19617 0.93152 0.84291 1.49376 0.90434 1.26008 0.96594 1.02299 0.96276 1.69654 1.07239 1.29428 1.49609 0.85015 0.77804 0.76813 0.78865 1.19753 1.19432 1.19877 0.91037 0.90813 0.89648 0.80224 0.79228 0.81182 0.74690 0.91817 0.92589 0.90694 0.92280 0.90154 0.93776 0.83194 0.90983 0.87602 0.76878 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.83 71.24 0.63 -1.21 16 2 C -0.09 -1.48 5.93 -19.50 -0.12 -1.59 16 3 C 0.09 1.26 10.83 84.68 0.92 2.18 16 4 N -0.49 -7.49 10.34 -196.01 -2.03 -9.51 16 5 C 0.08 0.89 11.17 84.67 0.95 1.83 16 6 C -0.13 -1.26 9.60 22.63 0.22 -1.04 16 7 C -0.11 -1.75 5.91 -19.88 -0.12 -1.87 16 8 C 0.56 11.02 7.70 86.88 0.67 11.69 16 9 O -0.56 -15.13 13.20 -3.76 -0.05 -15.18 16 10 N -0.70 -10.52 4.34 -445.11 -1.93 -12.45 16 11 C 0.15 3.04 2.29 44.99 0.10 3.14 16 12 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 13 C -0.17 -3.37 9.25 71.98 0.67 -2.71 16 14 C 0.08 1.66 2.28 44.92 0.10 1.76 16 15 H 0.07 1.15 7.80 -2.39 -0.02 1.13 16 16 C -0.14 -2.61 9.26 71.98 0.67 -1.94 16 17 N -0.68 -20.10 5.93 -495.56 -2.94 -23.04 16 18 C 0.07 2.14 5.97 85.56 0.51 2.65 16 19 C 0.44 20.28 7.82 87.66 0.69 20.96 16 20 O -0.62 -34.42 15.78 -3.07 -0.05 -34.47 16 21 N -0.57 -28.78 5.29 -306.99 -1.62 -30.40 16 22 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 25 N -0.92 -48.81 13.05 21.66 0.28 -48.53 16 26 Si 0.99 42.67 29.55 68.60 2.03 44.69 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 28 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 29 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 30 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.56 5.97 -2.39 -0.01 1.55 16 32 H 0.08 0.95 8.05 -2.39 -0.02 0.93 16 33 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.19 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.17 0.47 6.58 -2.91 -0.02 0.45 16 36 H 0.41 3.42 6.56 -92.71 -0.61 2.81 16 37 H 0.06 1.46 6.21 -2.39 -0.01 1.45 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.06 1.14 7.45 -2.39 -0.02 1.12 16 41 H 0.08 1.03 7.44 -2.38 -0.02 1.01 16 42 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.35 10.96 5.87 -89.69 -0.53 10.44 16 44 H 0.07 1.93 8.06 -2.38 -0.02 1.91 16 45 H 0.11 3.02 7.44 -2.39 -0.02 3.00 16 46 H 0.40 18.78 7.90 -92.70 -0.73 18.05 16 47 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -74.72 387.88 0.01 -74.71 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.84 Total: 38.53 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 7.16 Total: 15.65 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -8.24 Total: -123.93 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.10 Total: -49.65 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.72 0.01 -74.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733972275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.798 kcal (2) G-P(sol) polarization free energy of solvation -74.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds