Wall clock time and date at job start Tue Mar 31 2020 19:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 110.36648 * 2 1 4 4 C 1.54379 * 110.32341 * 237.81239 * 2 1 3 5 5 N 1.48558 * 104.59260 * 217.24836 * 4 2 1 6 6 C 1.46902 * 110.99730 * 159.04039 * 5 4 2 7 7 C 1.50710 * 109.46951 * 61.07759 * 6 5 4 8 8 O 1.21293 * 119.99410 * 6.05650 * 7 6 5 9 9 N 1.34769 * 120.00139 * 186.06008 * 7 6 5 10 10 C 1.37096 * 120.00062 * 179.97438 * 9 7 6 11 11 H 1.07995 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99819 * 179.97438 * 10 9 7 13 13 N 1.31413 * 120.00309 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99857 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46937 * 60.00466 * 14 12 10 16 16 H 1.48498 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47491 * 300.00828 * 14 12 10 18 18 C 1.48565 * 104.22190 * 39.48966 * 5 4 2 19 19 C 1.54258 * 110.31971 * 122.17870 * 2 1 3 20 20 H 1.09002 * 110.33111 * 359.97438 * 19 2 1 21 21 N 1.46501 * 110.32206 * 237.79263 * 19 2 1 22 22 C 1.34782 * 120.00220 * 155.00135 * 21 19 2 23 23 O 1.21687 * 119.99818 * 0.02562 * 22 21 19 24 24 C 1.46677 * 119.99849 * 179.97438 * 22 21 19 25 25 C 1.37876 * 126.23172 * 179.97438 * 24 22 21 26 26 C 1.39827 * 107.08892 * 180.02562 * 25 24 22 27 27 C 1.35454 * 107.86321 * 0.02562 * 26 25 24 28 28 N 1.35536 * 108.87034 * 359.72756 * 27 26 25 29 29 H 0.97008 * 125.67892 * 180.30661 * 28 27 26 30 30 H 1.08992 * 109.47429 * 297.81931 * 1 2 3 31 31 H 1.09001 * 109.47161 * 57.82452 * 1 2 3 32 32 H 1.08998 * 109.46869 * 177.82061 * 1 2 3 33 33 H 1.09001 * 109.47233 * 182.18066 * 3 2 1 34 34 H 1.09002 * 109.47000 * 302.17610 * 3 2 1 35 35 H 1.08995 * 109.47412 * 62.18186 * 3 2 1 36 36 H 1.09001 * 110.41467 * 336.03262 * 4 2 1 37 37 H 1.09004 * 110.40880 * 98.47179 * 4 2 1 38 38 H 1.08997 * 109.47265 * 181.07395 * 6 5 4 39 39 H 1.09003 * 109.47424 * 301.07805 * 6 5 4 40 40 H 0.97003 * 120.00019 * 359.97438 * 9 7 6 41 41 H 0.96993 * 120.00407 * 179.97438 * 13 12 10 42 42 H 1.08994 * 110.41140 * 201.73416 * 18 5 4 43 43 H 1.09000 * 110.41269 * 79.29144 * 18 5 4 44 44 H 0.97001 * 120.00191 * 335.00137 * 21 19 2 45 45 H 1.08010 * 126.45252 * 359.97438 * 25 24 22 46 46 H 1.07997 * 126.07286 * 179.97438 * 26 25 24 47 47 H 1.08002 * 125.56466 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0662 -0.7712 -1.2252 5 7 3.2694 -1.4828 -0.7223 6 6 3.6069 -2.6218 -1.5865 7 6 3.9118 -2.1248 -2.9763 8 8 3.9615 -0.9332 -3.1968 9 7 4.1291 -3.0044 -3.9739 10 6 4.4060 -2.5523 -5.2382 11 1 4.4503 -1.4913 -5.4347 12 6 4.6306 -3.4593 -6.2667 13 7 4.5771 -4.7504 -6.0277 14 14 5.0085 -2.8433 -7.9892 15 1 6.2442 -2.0203 -7.9605 16 1 5.2058 -4.0018 -8.8971 17 1 3.8755 -2.0181 -8.4796 18 6 2.8806 -1.9422 0.6360 19 6 2.0657 -0.7704 1.2244 20 1 1.2387 -1.1482 1.8256 21 7 2.9291 0.0948 2.0321 22 6 3.0957 -0.1566 3.3457 23 8 2.5294 -1.1026 3.8607 24 6 3.9606 0.7093 4.1542 25 6 4.2209 0.5721 5.5012 26 6 5.0900 1.6072 5.8592 27 6 5.3396 2.3428 4.7495 28 7 4.6637 1.8042 3.7054 29 1 4.6726 2.1362 2.7940 30 1 -0.3634 0.4796 0.9088 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3633 -1.0269 -0.0391 33 1 3.1517 1.4176 -0.0391 34 1 1.6759 1.9654 -0.8699 35 1 1.7394 1.9419 0.9088 36 1 1.3229 -1.4850 -1.5803 37 1 2.3394 -0.0780 -2.0209 38 1 4.4798 -3.1364 -1.1851 39 1 2.7638 -3.3117 -1.6242 40 1 4.0896 -3.9575 -3.7975 41 1 4.7335 -5.3835 -6.7456 42 1 3.7670 -2.1307 1.2417 43 1 2.2648 -2.8392 0.5722 44 1 3.3808 0.8486 1.6215 45 1 3.8268 -0.1907 6.1565 46 1 5.4906 1.7887 6.8456 47 1 5.9766 3.2137 4.7033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734143121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:28 Heat of formation + Delta-G solvation = -13.189989 kcal Electronic energy + Delta-G solvation = -29033.630032 eV Core-core repulsion = 25024.322999 eV Total energy + Delta-G solvation = -4009.307033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52121 -40.30492 -38.67650 -37.76672 -34.77033 -33.83575 -33.44613 -31.30143 -31.25695 -30.01683 -28.80438 -27.57897 -26.94946 -25.24967 -24.08233 -22.80887 -21.30507 -20.62076 -20.23207 -19.61746 -19.22116 -18.65365 -17.86862 -16.57241 -16.14983 -15.96878 -15.46877 -15.09407 -14.73246 -14.59317 -14.34858 -13.98182 -13.95475 -13.83277 -13.73592 -13.42883 -13.32142 -13.03849 -12.84407 -12.56987 -12.54708 -12.32867 -12.03921 -11.86651 -11.71769 -11.51432 -11.29739 -11.04622 -10.97544 -10.69928 -10.55011 -10.46232 -10.24410 -10.19592 -9.50471 -9.27942 -9.23374 -8.50636 -8.44829 -8.08060 -7.96791 -6.44247 -3.85329 1.26911 2.51332 2.82380 3.00489 3.17246 3.23462 3.25656 3.27352 3.87539 4.02611 4.24518 4.35408 4.56009 4.70025 4.78541 4.83553 5.02247 5.09953 5.17026 5.20958 5.22589 5.23444 5.38820 5.49044 5.57146 5.66281 5.73992 5.76639 5.79779 5.81960 5.87808 5.90969 5.93518 6.05567 6.06365 6.18219 6.23918 6.35306 6.44852 6.49091 6.66137 7.05429 7.09958 7.18313 7.38192 7.52025 8.02804 8.03950 8.58599 9.14895 9.51399 10.02824 10.73385 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002397 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.128751 B =11678.978196 C =12055.724413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.077 4.077 3 C -0.138 4.138 4 C 0.044 3.956 5 N -0.483 5.483 6 C 0.034 3.966 7 C 0.444 3.556 8 O -0.580 6.580 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.901 5.901 14 Si 0.931 3.069 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.019 3.981 19 C 0.153 3.847 20 H 0.099 0.901 21 N -0.715 5.715 22 C 0.587 3.413 23 O -0.533 6.533 24 C -0.054 4.054 25 C -0.109 4.109 26 C -0.214 4.214 27 C 0.022 3.978 28 N -0.539 5.539 29 H 0.417 0.583 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.041 0.959 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.399 0.601 45 H 0.147 0.853 46 H 0.143 0.857 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.506 11.438 19.043 22.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.195 4.195 4 C -0.083 4.083 5 N -0.207 5.207 6 C -0.098 4.098 7 C 0.229 3.771 8 O -0.465 6.465 9 N -0.199 5.199 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.111 4.111 19 C 0.048 3.952 20 H 0.117 0.883 21 N -0.368 5.368 22 C 0.374 3.626 23 O -0.410 6.410 24 C -0.167 4.167 25 C -0.135 4.135 26 C -0.238 4.238 27 C -0.114 4.114 28 N -0.135 5.135 29 H 0.254 0.746 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.236 0.764 45 H 0.165 0.835 46 H 0.161 0.839 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.402 11.735 18.933 22.534 hybrid contribution -0.106 -0.551 -1.473 1.576 sum -3.508 11.184 17.461 21.030 Atomic orbital electron populations 1.21875 0.93438 1.02189 1.02080 1.21613 0.95740 0.96169 0.94274 1.21783 1.01375 0.94636 1.01738 1.23365 0.90406 0.97967 0.96611 1.65208 1.33211 1.21715 1.00601 1.22086 1.01250 0.92575 0.93900 1.19677 0.84721 0.87160 0.85549 1.90477 1.56741 1.15810 1.83428 1.41863 1.61622 1.08447 1.08012 1.19631 1.44779 0.94517 0.83987 0.87989 1.25269 0.97430 0.94942 1.00295 1.69601 1.49617 1.00815 1.34203 0.85919 0.79160 0.77930 0.81213 1.19894 1.20962 1.19927 1.23611 0.99456 0.96194 0.91811 1.21780 0.92323 0.89919 0.91221 0.88298 1.46153 1.49630 1.32628 1.08398 1.17119 0.80368 0.83716 0.81388 1.90833 1.48462 1.29571 1.72122 1.20496 1.05868 0.94906 0.95468 1.21333 0.99594 0.99919 0.92696 1.20908 1.05206 0.98782 0.98894 1.22058 1.01000 1.01262 0.87128 1.42072 1.37048 1.23390 1.11022 0.74618 0.92468 0.91836 0.92324 0.91770 0.91623 0.92844 0.94057 0.87346 0.89171 0.93309 0.77472 0.91781 0.89853 0.92992 0.76382 0.83545 0.83950 0.81213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.26 37.16 0.31 -1.08 16 2 C -0.08 -0.89 1.03 -153.13 -0.16 -1.05 16 3 C -0.14 -1.40 7.10 37.16 0.26 -1.14 16 4 C 0.04 0.68 4.67 -2.18 -0.01 0.67 16 5 N -0.48 -7.83 5.18 -231.40 -1.20 -9.02 16 6 C 0.03 0.60 5.39 -4.97 -0.03 0.58 16 7 C 0.44 10.26 7.43 -10.98 -0.08 10.18 16 8 O -0.58 -15.04 14.01 5.55 0.08 -14.96 16 9 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 10 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 11 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 12 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 13 N -0.90 -24.42 13.05 55.50 0.72 -23.69 16 14 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 15 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.02 0.26 6.21 -2.18 -0.01 0.24 16 19 C 0.15 1.85 3.04 -66.55 -0.20 1.65 16 20 H 0.10 1.25 7.13 -51.93 -0.37 0.88 16 21 N -0.72 -7.88 4.51 -53.77 -0.24 -8.13 16 22 C 0.59 7.45 7.79 -12.85 -0.10 7.35 16 23 O -0.53 -8.51 16.53 5.20 0.09 -8.42 16 24 C -0.05 -0.59 7.06 -81.98 -0.58 -1.17 16 25 C -0.11 -1.16 10.65 -39.12 -0.42 -1.58 16 26 C -0.21 -1.79 10.81 -39.98 -0.43 -2.22 16 27 C 0.02 0.15 11.89 -16.91 -0.20 -0.05 16 28 N -0.54 -4.19 5.99 -9.39 -0.06 -4.24 16 29 H 0.42 2.25 8.19 -40.82 -0.33 1.92 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.06 0.69 6.97 -51.93 -0.36 0.32 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.45 7.75 -51.93 -0.40 0.05 16 36 H 0.04 0.64 7.64 -51.93 -0.40 0.25 16 37 H 0.11 1.99 6.25 -51.93 -0.32 1.66 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.05 0.80 7.98 -51.93 -0.41 0.39 16 40 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 41 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 42 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 43 H 0.05 0.69 7.92 -51.93 -0.41 0.28 16 44 H 0.40 3.72 5.04 -40.82 -0.21 3.52 16 45 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 46 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -33.11 383.06 -8.66 -41.78 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -6.85 Total: 14.78 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.89 Total: 4.49 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.83 Total: -59.27 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.16 Total: -23.39 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.11 -8.66 -41.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734143121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.587 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds