Wall clock time and date at job start Tue Mar 31 2020 19:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 110.36648 * 2 1 4 4 C 1.54379 * 110.32341 * 237.81239 * 2 1 3 5 5 N 1.48558 * 104.59260 * 217.24836 * 4 2 1 6 6 C 1.46902 * 110.99730 * 159.04039 * 5 4 2 7 7 C 1.50710 * 109.46951 * 61.07759 * 6 5 4 8 8 O 1.21293 * 119.99410 * 6.05650 * 7 6 5 9 9 N 1.34769 * 120.00139 * 186.06008 * 7 6 5 10 10 C 1.37096 * 120.00062 * 179.97438 * 9 7 6 11 11 H 1.07995 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99819 * 179.97438 * 10 9 7 13 13 N 1.31413 * 120.00309 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99857 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.46937 * 60.00466 * 14 12 10 16 16 H 1.48498 * 109.47381 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47491 * 300.00828 * 14 12 10 18 18 C 1.48565 * 104.22190 * 39.48966 * 5 4 2 19 19 C 1.54258 * 110.31971 * 122.17870 * 2 1 3 20 20 H 1.09002 * 110.33111 * 359.97438 * 19 2 1 21 21 N 1.46501 * 110.32206 * 237.79263 * 19 2 1 22 22 C 1.34782 * 120.00220 * 155.00135 * 21 19 2 23 23 O 1.21687 * 119.99818 * 0.02562 * 22 21 19 24 24 C 1.46677 * 119.99849 * 179.97438 * 22 21 19 25 25 C 1.37876 * 126.23172 * 179.97438 * 24 22 21 26 26 C 1.39827 * 107.08892 * 180.02562 * 25 24 22 27 27 C 1.35454 * 107.86321 * 0.02562 * 26 25 24 28 28 N 1.35536 * 108.87034 * 359.72756 * 27 26 25 29 29 H 0.97008 * 125.67892 * 180.30661 * 28 27 26 30 30 H 1.08992 * 109.47429 * 297.81931 * 1 2 3 31 31 H 1.09001 * 109.47161 * 57.82452 * 1 2 3 32 32 H 1.08998 * 109.46869 * 177.82061 * 1 2 3 33 33 H 1.09001 * 109.47233 * 182.18066 * 3 2 1 34 34 H 1.09002 * 109.47000 * 302.17610 * 3 2 1 35 35 H 1.08995 * 109.47412 * 62.18186 * 3 2 1 36 36 H 1.09001 * 110.41467 * 336.03262 * 4 2 1 37 37 H 1.09004 * 110.40880 * 98.47179 * 4 2 1 38 38 H 1.08997 * 109.47265 * 181.07395 * 6 5 4 39 39 H 1.09003 * 109.47424 * 301.07805 * 6 5 4 40 40 H 0.97003 * 120.00019 * 359.97438 * 9 7 6 41 41 H 0.96993 * 120.00407 * 179.97438 * 13 12 10 42 42 H 1.08994 * 110.41140 * 201.73416 * 18 5 4 43 43 H 1.09000 * 110.41269 * 79.29144 * 18 5 4 44 44 H 0.97001 * 120.00191 * 335.00137 * 21 19 2 45 45 H 1.08010 * 126.45252 * 359.97438 * 25 24 22 46 46 H 1.07997 * 126.07286 * 179.97438 * 26 25 24 47 47 H 1.08002 * 125.56466 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0625 1.4343 0.0000 4 6 2.0662 -0.7712 -1.2252 5 7 3.2694 -1.4828 -0.7223 6 6 3.6069 -2.6218 -1.5865 7 6 3.9118 -2.1248 -2.9763 8 8 3.9615 -0.9332 -3.1968 9 7 4.1291 -3.0044 -3.9739 10 6 4.4060 -2.5523 -5.2382 11 1 4.4503 -1.4913 -5.4347 12 6 4.6306 -3.4593 -6.2667 13 7 4.5771 -4.7504 -6.0277 14 14 5.0085 -2.8433 -7.9892 15 1 6.2442 -2.0203 -7.9605 16 1 5.2058 -4.0018 -8.8971 17 1 3.8755 -2.0181 -8.4796 18 6 2.8806 -1.9422 0.6360 19 6 2.0657 -0.7704 1.2244 20 1 1.2387 -1.1482 1.8256 21 7 2.9291 0.0948 2.0321 22 6 3.0957 -0.1566 3.3457 23 8 2.5294 -1.1026 3.8607 24 6 3.9606 0.7093 4.1542 25 6 4.2209 0.5721 5.5012 26 6 5.0900 1.6072 5.8592 27 6 5.3396 2.3428 4.7495 28 7 4.6637 1.8042 3.7054 29 1 4.6726 2.1362 2.7940 30 1 -0.3634 0.4796 0.9088 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3633 -1.0269 -0.0391 33 1 3.1517 1.4176 -0.0391 34 1 1.6759 1.9654 -0.8699 35 1 1.7394 1.9419 0.9088 36 1 1.3229 -1.4850 -1.5803 37 1 2.3394 -0.0780 -2.0209 38 1 4.4798 -3.1364 -1.1851 39 1 2.7638 -3.3117 -1.6242 40 1 4.0896 -3.9575 -3.7975 41 1 4.7335 -5.3835 -6.7456 42 1 3.7670 -2.1307 1.2417 43 1 2.2648 -2.8392 0.5722 44 1 3.3808 0.8486 1.6215 45 1 3.8268 -0.1907 6.1565 46 1 5.4906 1.7887 6.8456 47 1 5.9766 3.2137 4.7033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734143121.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:27 Heat of formation + Delta-G solvation = -38.114764 kcal Electronic energy + Delta-G solvation = -29034.710852 eV Core-core repulsion = 25024.322999 eV Total energy + Delta-G solvation = -4010.387852 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26925 -41.35832 -40.10922 -39.18210 -36.21331 -35.58292 -34.46449 -33.27037 -31.98102 -30.97446 -29.85571 -28.63340 -28.05533 -26.85354 -25.44503 -23.81957 -22.34703 -21.35302 -21.08455 -20.96885 -20.51465 -19.90337 -19.56066 -17.76048 -17.55836 -17.01625 -16.75710 -16.39168 -16.12020 -16.03240 -15.59874 -15.45237 -15.05610 -14.75182 -14.66948 -14.60817 -14.38989 -14.19682 -13.89714 -13.61747 -13.52405 -13.31946 -13.24104 -13.15099 -13.05955 -12.91597 -12.80175 -12.44425 -12.39710 -12.13800 -11.95621 -11.76265 -11.61145 -11.44442 -11.21485 -10.38496 -10.14938 -10.02236 -9.93652 -9.44757 -9.16432 -8.47351 -5.96194 0.47729 1.38656 1.40695 1.51629 1.86377 2.02969 2.04478 2.26553 2.27190 2.37436 2.77507 3.19025 3.27252 3.40381 3.57972 3.88652 3.90999 4.14010 4.21573 4.27604 4.32636 4.36067 4.37150 4.44654 4.49032 4.52260 4.60820 4.68042 4.73933 4.76985 4.85428 4.93553 5.00437 5.13852 5.15708 5.26374 5.28991 5.35682 5.38958 5.40370 5.75572 5.79153 5.85564 5.96157 6.03930 6.43611 6.58658 6.60366 7.10658 7.11290 7.54442 8.09304 8.69955 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.018500 B = 0.002397 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.128751 B =11678.978196 C =12055.724413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.067 4.067 3 C -0.136 4.136 4 C 0.046 3.954 5 N -0.494 5.494 6 C 0.043 3.957 7 C 0.444 3.556 8 O -0.610 6.610 9 N -0.574 5.574 10 C -0.331 4.331 11 H 0.081 0.919 12 C -0.015 4.015 13 N -0.922 5.922 14 Si 0.993 3.007 15 H -0.271 1.271 16 H -0.272 1.272 17 H -0.271 1.271 18 C 0.022 3.978 19 C 0.158 3.842 20 H 0.099 0.901 21 N -0.705 5.705 22 C 0.587 3.413 23 O -0.574 6.574 24 C -0.083 4.083 25 C -0.126 4.126 26 C -0.229 4.229 27 C 0.043 3.957 28 N -0.530 5.530 29 H 0.428 0.572 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.408 0.592 45 H 0.137 0.863 46 H 0.161 0.839 47 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.169 12.889 19.718 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.068 4.068 3 C -0.193 4.193 4 C -0.082 4.082 5 N -0.219 5.219 6 C -0.088 4.088 7 C 0.231 3.769 8 O -0.496 6.496 9 N -0.212 5.212 10 C -0.460 4.460 11 H 0.099 0.901 12 C -0.214 4.214 13 N -0.563 5.563 14 Si 0.817 3.183 15 H -0.197 1.197 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.107 4.107 19 C 0.053 3.947 20 H 0.117 0.883 21 N -0.357 5.357 22 C 0.376 3.624 23 O -0.454 6.454 24 C -0.196 4.196 25 C -0.153 4.153 26 C -0.252 4.252 27 C -0.094 4.094 28 N -0.127 5.127 29 H 0.267 0.733 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.094 0.906 38 H 0.123 0.877 39 H 0.084 0.916 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.078 0.922 44 H 0.247 0.753 45 H 0.155 0.845 46 H 0.179 0.821 47 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -3.063 13.200 19.599 23.827 hybrid contribution -0.166 -0.946 -1.601 1.867 sum -3.230 12.254 17.998 22.012 Atomic orbital electron populations 1.21863 0.91930 1.02513 1.02998 1.21548 0.96846 0.96388 0.92016 1.21773 1.00941 0.93745 1.02850 1.23265 0.89998 0.97510 0.97435 1.65168 1.34084 1.21273 1.01337 1.21969 1.02586 0.93367 0.90899 1.20556 0.82742 0.86570 0.87023 1.90458 1.57481 1.17232 1.84398 1.41939 1.62486 1.08784 1.07961 1.19619 1.46810 0.93905 0.85676 0.90081 1.26061 0.96683 0.95046 1.03639 1.69671 1.49657 1.01541 1.35427 0.84984 0.78892 0.77750 0.76701 1.19656 1.19665 1.19579 1.23614 0.99611 0.97301 0.90191 1.21673 0.92154 0.89609 0.91298 0.88307 1.46038 1.49249 1.32545 1.07917 1.17367 0.80021 0.83374 0.81617 1.90801 1.50279 1.31409 1.72898 1.20236 1.07439 0.96449 0.95490 1.21522 1.00314 1.00598 0.92862 1.21213 1.05130 0.98408 1.00472 1.22740 0.99419 1.01191 0.86040 1.42083 1.36304 1.22388 1.11931 0.73270 0.90972 0.91493 0.92342 0.92399 0.91704 0.90602 0.94620 0.90577 0.87730 0.91554 0.77178 0.91334 0.90408 0.92200 0.75304 0.84525 0.82105 0.77201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.26 71.98 0.59 -1.93 16 2 C -0.07 -1.49 1.03 -51.29 -0.05 -1.54 16 3 C -0.14 -2.58 7.10 71.98 0.51 -2.06 16 4 C 0.05 1.41 4.67 86.45 0.40 1.82 16 5 N -0.49 -15.87 5.18 -886.01 -4.59 -20.47 16 6 C 0.04 1.54 5.39 85.56 0.46 2.00 16 7 C 0.44 20.91 7.43 87.66 0.65 21.56 16 8 O -0.61 -32.47 14.01 -3.07 -0.04 -32.52 16 9 N -0.57 -29.44 5.29 -306.98 -1.62 -31.06 16 10 C -0.33 -18.60 9.68 84.04 0.81 -17.78 16 11 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 12 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 13 N -0.92 -49.92 13.05 21.66 0.28 -49.64 16 14 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 C 0.02 0.58 6.21 86.45 0.54 1.12 16 19 C 0.16 3.68 3.04 45.89 0.14 3.82 16 20 H 0.10 2.39 7.13 -2.39 -0.02 2.37 16 21 N -0.70 -14.82 4.51 -442.25 -2.00 -16.82 16 22 C 0.59 14.69 7.79 86.45 0.67 15.37 16 23 O -0.57 -18.55 16.53 -4.31 -0.07 -18.62 16 24 C -0.08 -1.74 7.06 40.35 0.28 -1.46 16 25 C -0.13 -2.62 10.65 22.57 0.24 -2.38 16 26 C -0.23 -3.35 10.81 22.01 0.24 -3.11 16 27 C 0.04 0.46 11.89 83.48 0.99 1.45 16 28 N -0.53 -7.02 5.99 -183.62 -1.10 -8.12 16 29 H 0.43 3.53 8.19 -92.70 -0.76 2.77 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.09 8.10 -2.39 -0.02 1.08 16 33 H 0.06 1.17 6.97 -2.39 -0.02 1.15 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.11 7.75 -2.39 -0.02 1.09 16 36 H 0.04 1.12 7.64 -2.39 -0.02 1.10 16 37 H 0.08 2.87 6.25 -2.38 -0.01 2.85 16 38 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 40 H 0.39 19.44 7.90 -92.71 -0.73 18.71 16 41 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.08 2.19 8.05 -2.39 -0.02 2.17 16 43 H 0.06 1.52 7.92 -2.39 -0.02 1.50 16 44 H 0.41 7.02 5.04 -92.71 -0.47 6.55 16 45 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 46 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.21 0.47 8.06 -2.91 -0.02 0.44 16 Total: -1.00 -73.17 383.06 -1.10 -74.28 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -0.94 Total: 41.73 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.95 Total: 16.57 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -9.03 Total: -126.11 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.11 Total: -51.14 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Total: -73.17 -1.10 -74.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734143121.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.162 kcal (2) G-P(sol) polarization free energy of solvation -73.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds