Wall clock time and date at job start Tue Mar 31 2020 19:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53011 * 110.36649 * 2 1 4 4 C 1.54613 * 110.40112 * 237.73123 * 2 1 3 5 5 N 1.48560 * 104.63498 * 217.34565 * 4 2 1 6 6 C 1.46898 * 111.00396 * 158.99815 * 5 4 2 7 7 C 1.50699 * 109.47746 * 174.70756 * 6 5 4 8 8 O 1.21299 * 119.99227 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00169 * 180.02562 * 7 6 5 10 10 C 1.37106 * 119.99868 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99984 * 359.97438 * 10 9 7 12 12 C 1.38945 * 119.99738 * 179.97438 * 10 9 7 13 13 N 1.31404 * 120.00231 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99589 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.46960 * 60.00662 * 14 12 10 16 16 H 1.48506 * 109.46870 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47639 * 300.00041 * 14 12 10 18 18 C 1.48571 * 104.22143 * 39.44351 * 5 4 2 19 19 C 1.54257 * 110.32776 * 122.17855 * 2 1 3 20 20 H 1.09002 * 110.32715 * 237.79589 * 19 2 1 21 21 N 1.46496 * 110.32272 * 359.90194 * 19 2 1 22 22 C 1.34775 * 120.00429 * 203.57234 * 21 19 2 23 23 O 1.21702 * 119.99723 * 359.97438 * 22 21 19 24 24 C 1.46676 * 120.00622 * 179.97438 * 22 21 19 25 25 C 1.37867 * 126.23702 * 179.68654 * 24 22 21 26 26 C 1.39834 * 107.08740 * 179.84630 * 25 24 22 27 27 C 1.35450 * 107.86493 * 0.42018 * 26 25 24 28 28 N 1.35534 * 108.87176 * 359.74008 * 27 26 25 29 29 H 0.96998 * 125.67896 * 180.02562 * 28 27 26 30 30 H 1.08999 * 109.46687 * 297.81841 * 1 2 3 31 31 H 1.08998 * 109.47195 * 57.81733 * 1 2 3 32 32 H 1.08993 * 109.46417 * 177.81855 * 1 2 3 33 33 H 1.08999 * 109.47080 * 182.18206 * 3 2 1 34 34 H 1.09000 * 109.46952 * 302.18199 * 3 2 1 35 35 H 1.08996 * 109.47207 * 62.18291 * 3 2 1 36 36 H 1.09004 * 110.42440 * 98.54159 * 4 2 1 37 37 H 1.09002 * 110.45864 * 336.17093 * 4 2 1 38 38 H 1.09004 * 109.47101 * 294.71321 * 6 5 4 39 39 H 1.09004 * 109.46798 * 54.70608 * 6 5 4 40 40 H 0.97001 * 120.00259 * 0.02562 * 9 7 6 41 41 H 0.97007 * 120.00283 * 179.97438 * 13 12 10 42 42 H 1.09000 * 110.41131 * 201.73967 * 18 5 4 43 43 H 1.08999 * 110.40798 * 79.29743 * 18 5 4 44 44 H 0.97007 * 120.00255 * 23.56988 * 21 19 2 45 45 H 1.08002 * 126.45349 * 359.96922 * 25 24 22 46 46 H 1.07998 * 126.07156 * 180.17946 * 26 25 24 47 47 H 1.07999 * 125.56554 * 179.77321 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4345 0.0000 4 6 2.0690 -0.7737 -1.2253 5 7 3.2709 -1.4861 -0.7205 6 6 3.6082 -2.6263 -1.5831 7 6 4.9014 -3.2438 -1.1169 8 8 5.4844 -2.7799 -0.1597 9 7 5.4100 -4.3114 -1.7634 10 6 6.5862 -4.8735 -1.3388 11 1 7.1054 -4.4605 -0.4867 12 6 7.1103 -5.9744 -2.0051 13 7 6.4783 -6.4772 -3.0416 14 14 8.7133 -6.7398 -1.4271 15 1 8.5617 -7.2072 -0.0257 16 1 9.0545 -7.8920 -2.2996 17 1 9.7984 -5.7283 -1.4969 18 6 2.8802 -1.9436 0.6380 19 6 2.0659 -0.7703 1.2243 20 1 2.7082 -0.1266 1.8253 21 7 0.9544 -1.2766 2.0333 22 6 1.1407 -1.5471 3.3404 23 8 2.2325 -1.3712 3.8486 24 6 0.0278 -2.0534 4.1506 25 6 0.0757 -2.3765 5.4900 26 6 -1.2024 -2.8119 5.8537 27 6 -1.9889 -2.7575 4.7522 28 7 -1.2534 -2.2983 3.7106 29 1 -1.5761 -2.1641 2.8058 30 1 -0.3633 0.4796 0.9089 31 1 -0.3633 0.5473 -0.8697 32 1 -0.3632 -1.0269 -0.0391 33 1 3.1517 1.4177 -0.0391 34 1 1.6758 1.9655 -0.8698 35 1 1.7394 1.9420 0.9089 36 1 2.3438 -0.0816 -2.0214 37 1 1.3262 -1.4871 -1.5824 38 1 2.8117 -3.3688 -1.5319 39 1 3.7194 -2.2832 -2.6117 40 1 4.9438 -4.6821 -2.5290 41 1 6.8444 -7.2456 -3.5070 42 1 3.7657 -2.1324 1.2448 43 1 2.2636 -2.8401 0.5745 44 1 0.0843 -1.4171 1.6282 45 1 0.9375 -2.3047 6.1370 46 1 -1.5072 -3.1378 6.8371 47 1 -3.0320 -3.0344 4.7109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734143137.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:31 Heat of formation + Delta-G solvation = -39.409661 kcal Electronic energy + Delta-G solvation = -29055.962699 eV Core-core repulsion = 25045.518696 eV Total energy + Delta-G solvation = -4010.444003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32513 -41.35635 -40.11961 -39.27931 -36.27528 -35.69840 -34.42906 -33.30012 -32.04560 -31.01830 -29.89869 -28.58919 -28.19749 -26.75832 -25.37980 -23.84160 -22.50067 -21.45400 -21.17996 -21.05167 -20.53161 -19.91878 -19.57902 -17.81000 -17.44336 -16.97991 -16.60950 -16.50860 -16.33234 -15.94622 -15.70807 -15.41833 -15.15755 -15.04939 -14.67267 -14.64625 -14.36886 -14.14701 -14.07160 -13.65173 -13.53389 -13.41997 -13.22545 -13.08700 -13.03503 -12.84958 -12.64685 -12.46486 -12.42815 -12.14969 -11.92354 -11.80661 -11.61319 -11.50168 -11.31942 -10.36669 -10.31247 -10.03446 -9.98014 -9.42248 -9.21067 -8.49249 -5.97845 0.41231 1.36859 1.38258 1.49356 1.81912 1.90792 2.03162 2.20425 2.26814 2.30882 2.83294 3.16570 3.28001 3.42503 3.56557 3.81934 3.88754 4.10512 4.16428 4.24574 4.30344 4.32961 4.38382 4.39485 4.48516 4.50562 4.65345 4.68982 4.73280 4.81072 4.96406 4.98619 5.01717 5.09242 5.13297 5.25426 5.26856 5.28818 5.37831 5.42047 5.70799 5.77817 5.88534 5.89216 6.05852 6.38166 6.58534 6.59040 7.07028 7.10832 7.53579 8.11072 8.68078 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.002842 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.626473 B = 9849.564719 C =11342.712907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.064 4.064 3 C -0.132 4.132 4 C 0.038 3.962 5 N -0.504 5.504 6 C 0.049 3.951 7 C 0.437 3.563 8 O -0.619 6.619 9 N -0.574 5.574 10 C -0.335 4.335 11 H 0.074 0.926 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.990 3.010 15 H -0.274 1.274 16 H -0.266 1.266 17 H -0.272 1.272 18 C 0.037 3.963 19 C 0.157 3.843 20 H 0.073 0.927 21 N -0.706 5.706 22 C 0.580 3.420 23 O -0.579 6.579 24 C -0.083 4.083 25 C -0.129 4.129 26 C -0.231 4.231 27 C 0.052 3.948 28 N -0.525 5.525 29 H 0.431 0.569 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.397 0.603 41 H 0.278 0.722 42 H 0.045 0.955 43 H 0.040 0.960 44 H 0.412 0.588 45 H 0.129 0.871 46 H 0.161 0.839 47 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.442 10.676 5.298 29.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 C -0.190 4.190 4 C -0.089 4.089 5 N -0.228 5.228 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.505 6.505 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.092 0.908 12 C -0.210 4.210 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.200 1.200 16 H -0.190 1.190 17 H -0.198 1.198 18 C -0.092 4.092 19 C 0.051 3.949 20 H 0.091 0.909 21 N -0.361 5.361 22 C 0.370 3.630 23 O -0.459 6.459 24 C -0.196 4.196 25 C -0.157 4.157 26 C -0.254 4.254 27 C -0.085 4.085 28 N -0.123 5.123 29 H 0.271 0.729 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.231 0.769 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.252 0.748 45 H 0.147 0.853 46 H 0.179 0.821 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -24.772 11.335 5.947 27.884 hybrid contribution 0.296 -1.457 -0.501 1.569 sum -24.477 9.878 5.446 26.951 Atomic orbital electron populations 1.21901 0.91096 1.02790 1.04181 1.21571 0.97630 0.95850 0.91451 1.21811 1.00752 0.93515 1.02873 1.23509 0.90347 0.97566 0.97472 1.65006 1.34359 1.22222 1.01248 1.21937 0.94087 0.93243 0.98972 1.20865 0.89037 0.82309 0.85329 1.90513 1.64095 1.64643 1.31200 1.41897 1.22140 1.27376 1.29728 1.19584 1.00526 1.12060 1.14266 0.90810 1.25992 1.02575 0.96690 0.95781 1.69652 1.41019 1.24972 1.20366 0.85034 0.77513 0.77877 0.78182 1.19982 1.19027 1.19760 1.23304 0.97961 0.96487 0.91468 1.21616 0.87338 0.93815 0.92164 0.90913 1.45981 1.14608 1.66930 1.08532 1.17566 0.86786 0.76698 0.81989 1.90861 1.27042 1.54846 1.73103 1.20079 0.86229 1.17640 0.95644 1.21539 0.99378 1.01619 0.93162 1.21223 0.92741 1.10523 1.00903 1.22783 0.99295 1.00613 0.85817 1.41974 1.07595 1.50121 1.12571 0.72909 0.91111 0.89238 0.91352 0.93831 0.89730 0.92335 0.88199 0.91462 0.91147 0.86417 0.76936 0.91210 0.93654 0.94216 0.74765 0.85323 0.82098 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 7.11 71.98 0.51 -0.86 16 2 C -0.06 -1.19 1.04 -51.20 -0.05 -1.24 16 3 C -0.13 -2.41 8.24 71.99 0.59 -1.81 16 4 C 0.04 0.81 5.59 86.53 0.48 1.29 16 5 N -0.50 -16.90 5.06 -885.52 -4.48 -21.38 16 6 C 0.05 1.75 5.30 85.56 0.45 2.20 16 7 C 0.44 22.03 7.59 87.66 0.66 22.70 16 8 O -0.62 -36.90 14.42 -3.09 -0.04 -36.95 16 9 N -0.57 -30.67 5.29 -306.99 -1.62 -32.29 16 10 C -0.33 -19.85 9.68 84.04 0.81 -19.04 16 11 H 0.07 4.71 7.16 -2.91 -0.02 4.69 16 12 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 13 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 14 Si 0.99 44.56 29.55 68.60 2.03 46.58 16 15 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 18 C 0.04 1.34 5.51 86.45 0.48 1.82 16 19 C 0.16 4.31 3.01 45.89 0.14 4.45 16 20 H 0.07 2.49 7.17 -2.39 -0.02 2.47 16 21 N -0.71 -15.68 4.55 -442.26 -2.01 -17.69 16 22 C 0.58 16.96 7.79 86.45 0.67 17.63 16 23 O -0.58 -23.42 16.56 -4.35 -0.07 -23.50 16 24 C -0.08 -1.89 7.06 40.35 0.28 -1.61 16 25 C -0.13 -3.07 10.65 22.57 0.24 -2.83 16 26 C -0.23 -3.61 10.81 22.01 0.24 -3.37 16 27 C 0.05 0.50 11.89 83.48 0.99 1.50 16 28 N -0.53 -6.32 5.99 -183.62 -1.10 -7.42 16 29 H 0.43 2.02 8.19 -92.71 -0.76 1.26 16 30 H 0.07 0.61 7.73 -2.39 -0.02 0.59 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.48 6.95 -2.39 -0.02 0.47 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.88 7.86 -2.38 -0.02 1.86 16 37 H 0.07 1.15 7.69 -2.39 -0.02 1.13 16 38 H 0.07 2.21 7.88 -2.38 -0.02 2.19 16 39 H 0.12 3.57 8.13 -2.38 -0.02 3.55 16 40 H 0.40 19.85 7.90 -92.71 -0.73 19.12 16 41 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 42 H 0.04 2.18 6.91 -2.39 -0.02 2.16 16 43 H 0.04 1.37 7.74 -2.39 -0.02 1.36 16 44 H 0.41 5.55 4.98 -92.70 -0.46 5.08 16 45 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 46 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.22 0.01 8.06 -2.91 -0.02 -0.01 16 Total: -1.00 -86.43 383.90 -0.98 -87.41 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.93 Total: 34.82 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 6.98 Total: 20.71 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -8.94 Total: -129.08 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: -0.12 Total: -60.45 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -86.43 -0.98 -87.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734143137.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.999 kcal (2) G-P(sol) polarization free energy of solvation -86.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds