Wall clock time and date at job start Tue Mar 31 2020 18:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38587 * 120.73723 * 2 1 4 4 N 1.32295 * 119.17602 * 179.97438 * 3 2 1 5 5 C 1.32327 * 120.76094 * 0.02562 * 4 3 2 6 6 O 1.35455 * 119.19580 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99728 * 180.02562 * 6 5 4 8 8 C 1.53120 * 109.52570 * 149.99420 * 7 6 5 9 9 C 1.53041 * 109.28182 * 177.61748 * 8 7 6 10 10 N 1.46849 * 109.52442 * 300.82868 * 9 8 7 11 11 C 1.46901 * 110.99649 * 185.83742 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99608 * 11 10 9 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46835 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47061 * 60.00295 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 C 1.46839 * 111.20047 * 61.73811 * 10 9 8 25 25 C 1.53034 * 109.52552 * 298.25821 * 24 10 9 26 26 N 1.32320 * 121.60282 * 0.25797 * 5 4 3 27 27 C 1.32296 * 120.76272 * 359.47673 * 26 5 4 28 28 H 1.08996 * 109.46693 * 90.00216 * 1 2 3 29 29 H 1.09000 * 109.46830 * 209.99440 * 1 2 3 30 30 H 1.08996 * 109.47137 * 330.00063 * 1 2 3 31 31 H 1.08002 * 120.41788 * 359.95880 * 3 2 1 32 32 H 1.09005 * 109.52484 * 29.86753 * 7 6 5 33 33 H 1.09005 * 109.50142 * 57.68531 * 8 7 6 34 34 H 1.08998 * 109.50777 * 297.56428 * 8 7 6 35 35 H 1.08991 * 109.46218 * 180.80508 * 9 8 7 36 36 H 1.09005 * 109.44695 * 60.83538 * 9 8 7 37 37 H 1.09002 * 109.47401 * 49.99636 * 11 10 9 38 38 H 1.09001 * 109.46874 * 289.99649 * 11 10 9 39 39 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 41 41 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.46266 * 58.27078 * 24 10 9 44 44 H 1.09002 * 109.46276 * 178.24270 * 24 10 9 45 45 H 1.09006 * 109.50444 * 299.24199 * 25 24 10 46 46 H 1.09003 * 109.50687 * 179.12283 * 25 24 10 47 47 H 1.07996 * 120.41700 * 180.23385 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2154 1.1912 0.0000 4 7 3.5378 1.1551 0.0005 5 6 4.1834 0.0000 0.0005 6 8 5.5380 0.0001 0.0005 7 6 6.1867 -1.2731 0.0000 8 6 7.5326 -1.1614 -0.7217 9 6 8.2489 -2.5127 -0.6672 10 7 8.4550 -2.9028 0.7334 11 6 9.2618 -4.1270 0.8256 12 6 9.6588 -4.3601 2.2606 13 8 9.3041 -3.5832 3.1217 14 7 10.4071 -5.4325 2.5870 15 6 10.7925 -5.6593 3.9821 16 6 11.6202 -6.9151 4.0767 17 1 11.8378 -7.4867 3.1866 18 6 12.0998 -7.3342 5.2996 19 7 11.8344 -6.6383 6.3835 20 14 13.1252 -8.8911 5.4169 21 1 14.3460 -8.7437 4.5842 22 1 13.5160 -9.1211 6.8310 23 1 12.3295 -10.0459 4.9287 24 6 7.1745 -3.0624 1.4341 25 6 6.4261 -1.7276 1.4425 26 7 3.5379 -1.1551 -0.0051 27 6 2.2155 -1.1912 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6944 2.1372 -0.0007 32 1 5.5583 -2.0019 -0.5120 33 1 8.1460 -0.4045 -0.2327 34 1 7.3659 -0.8795 -1.7613 35 1 9.2138 -2.4326 -1.1677 36 1 7.6411 -3.2661 -1.1684 37 1 10.1574 -4.0188 0.2138 38 1 8.6776 -4.9749 0.4678 39 1 10.6904 -6.0539 1.8984 40 1 11.3767 -4.8116 4.3401 41 1 9.8966 -5.7673 4.5936 42 1 12.1721 -6.9330 7.2438 43 1 6.5719 -3.8134 0.9229 44 1 7.3591 -3.3817 2.4598 45 1 7.0220 -0.9795 1.9655 46 1 5.4688 -1.8502 1.9490 47 1 1.6944 -2.1372 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847032818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:42 Heat of formation + Delta-G solvation = -18.182630 kcal Electronic energy + Delta-G solvation = -27935.892760 eV Core-core repulsion = 23926.369231 eV Total energy + Delta-G solvation = -4009.523530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.59982 -39.84381 -38.81222 -37.33126 -34.22434 -34.13329 -33.75901 -32.60370 -32.25132 -30.95820 -28.35336 -27.46500 -26.26691 -25.18768 -23.64594 -23.31833 -22.65405 -22.04582 -20.06336 -19.63793 -19.07454 -18.17271 -17.09347 -16.34380 -16.25094 -15.74887 -15.59553 -15.29078 -14.99068 -14.80316 -14.62027 -14.49186 -14.26231 -13.98729 -13.81437 -13.69534 -13.44510 -13.15750 -12.88263 -12.64321 -12.50055 -12.27548 -11.99256 -11.86919 -11.55835 -11.36737 -11.29256 -11.26509 -11.24515 -10.98994 -10.86058 -10.70576 -10.40845 -10.28253 -9.46860 -9.40484 -9.08445 -8.97559 -8.72117 -8.23226 -7.84194 -6.15973 -4.23090 0.63220 0.69944 2.28073 3.25240 3.30036 3.31469 3.39472 3.40296 3.63645 3.69090 4.18809 4.24148 4.27362 4.41174 4.42554 4.45922 4.57689 4.66933 4.94553 5.07747 5.09059 5.15274 5.19169 5.19841 5.21757 5.37262 5.38548 5.44734 5.50306 5.51225 5.56543 5.62158 5.71665 5.80532 5.84784 5.99755 6.16043 6.27072 6.44850 6.91777 6.97734 7.11049 7.33566 7.46403 7.53368 7.68174 7.77240 7.98054 8.64747 8.79761 9.13907 9.43676 10.94116 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.001832 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.814369 B =15277.682181 C =15857.794995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.241 4.241 3 C 0.187 3.813 4 N -0.524 5.524 5 C 0.500 3.500 6 O -0.281 6.281 7 C 0.094 3.906 8 C -0.112 4.112 9 C 0.062 3.938 10 N -0.521 5.521 11 C 0.036 3.964 12 C 0.498 3.502 13 O -0.538 6.538 14 N -0.715 5.715 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.276 1.276 24 C 0.057 3.943 25 C -0.126 4.126 26 N -0.563 5.563 27 C 0.188 3.812 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.174 0.826 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.035 0.965 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.389 0.611 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.266 0.734 43 H 0.029 0.971 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 11.295 -18.479 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.246 4.246 3 C 0.021 3.979 4 N -0.249 5.249 5 C 0.199 3.801 6 O -0.182 6.182 7 C 0.037 3.963 8 C -0.150 4.150 9 C -0.066 4.066 10 N -0.246 5.246 11 C -0.095 4.095 12 C 0.282 3.718 13 O -0.416 6.416 14 N -0.364 5.364 15 C 0.131 3.869 16 C -0.583 4.583 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.070 4.070 25 C -0.164 4.164 26 N -0.291 5.291 27 C 0.022 3.978 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.191 0.809 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.222 0.778 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.076 0.924 43 H 0.047 0.953 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.088 0.912 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.724 12.404 -17.389 29.074 hybrid contribution -0.639 -1.982 -0.541 2.151 sum -20.364 10.423 -17.930 29.065 Atomic orbital electron populations 1.20547 0.88927 1.03409 1.02637 1.21523 0.99272 0.95393 1.08449 1.23026 0.87602 0.98543 0.88743 1.67623 1.10174 1.27995 1.19114 1.20762 0.86337 0.84798 0.88251 1.86157 1.11964 1.34127 1.85965 1.22687 0.93083 0.82288 0.98193 1.21684 0.94001 0.98838 1.00438 1.22043 1.00270 0.95132 0.89189 1.61562 1.17479 1.32837 1.12694 1.21994 0.99025 0.91869 0.96608 1.20292 0.79686 0.81913 0.89934 1.90633 1.54872 1.45442 1.50626 1.46452 1.52065 1.25127 1.12767 1.19075 0.95515 0.96514 0.75814 1.21197 1.33954 1.09044 0.94083 0.91970 1.24954 0.96181 0.97460 0.95422 1.69962 1.44645 1.38796 0.98840 0.86476 0.80403 0.82808 0.77210 1.20065 1.21075 1.20107 1.22198 0.87914 0.95208 1.01721 1.21973 1.00676 0.98552 0.95243 1.68062 1.11307 1.29313 1.20464 1.22918 0.88019 0.98483 0.88400 0.90952 0.91071 0.91068 0.80877 0.89306 0.89500 0.90678 0.89606 0.94651 0.88179 0.92370 0.77840 0.95526 0.95645 0.92392 0.95284 0.87590 0.89867 0.91246 0.81271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.31 10.06 36.01 0.36 0.05 16 2 C -0.24 -1.59 5.91 -104.36 -0.62 -2.21 16 3 C 0.19 1.50 11.00 -17.22 -0.19 1.31 16 4 N -0.52 -6.31 10.46 -14.73 -0.15 -6.47 16 5 C 0.50 6.45 8.46 -91.24 -0.77 5.68 16 6 O -0.28 -3.84 9.85 -18.06 -0.18 -4.02 16 7 C 0.09 1.14 2.43 -26.61 -0.06 1.07 16 8 C -0.11 -1.20 5.75 -26.65 -0.15 -1.35 16 9 C 0.06 0.66 5.46 -3.83 -0.02 0.64 16 10 N -0.52 -7.36 4.40 -236.11 -1.04 -8.40 16 11 C 0.04 0.51 5.45 -4.97 -0.03 0.48 16 12 C 0.50 9.79 7.50 -10.98 -0.08 9.71 16 13 O -0.54 -12.80 14.32 5.56 0.08 -12.72 16 14 N -0.71 -14.85 5.55 -61.47 -0.34 -15.19 16 15 C 0.25 6.66 5.43 -5.19 -0.03 6.64 16 16 C -0.54 -14.76 9.28 -34.44 -0.32 -15.07 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.06 0.83 5.10 -3.84 -0.02 0.81 16 25 C -0.13 -1.72 5.72 -26.65 -0.15 -1.87 16 26 N -0.56 -6.35 8.66 -14.73 -0.13 -6.48 16 27 C 0.19 1.50 11.00 -17.22 -0.19 1.31 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.18 8.10 -51.93 -0.42 -0.24 16 30 H 0.07 0.16 8.10 -51.93 -0.42 -0.26 16 31 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.09 1.05 6.95 -51.93 -0.36 0.69 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 1.18 7.99 -51.93 -0.41 0.77 16 38 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 39 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 1.89 5.78 -51.93 -0.30 1.59 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -34.89 388.09 -9.85 -44.73 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.28 Total: 3.46 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.37 Total: 8.84 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.92 Total: -61.96 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.10 Total: -16.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.89 -9.85 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847032818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.549 kcal (2) G-P(sol) polarization free energy of solvation -34.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds