Wall clock time and date at job start Tue Mar 31 2020 18:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38587 * 120.73723 * 2 1 4 4 N 1.32295 * 119.17602 * 179.97438 * 3 2 1 5 5 C 1.32327 * 120.76094 * 0.02562 * 4 3 2 6 6 O 1.35455 * 119.19580 * 179.97438 * 5 4 3 7 7 C 1.42895 * 116.99728 * 180.02562 * 6 5 4 8 8 C 1.53120 * 109.52570 * 149.99420 * 7 6 5 9 9 C 1.53041 * 109.28182 * 177.61748 * 8 7 6 10 10 N 1.46849 * 109.52442 * 300.82868 * 9 8 7 11 11 C 1.46901 * 110.99649 * 185.83742 * 10 9 8 12 12 C 1.50701 * 109.46921 * 169.99608 * 11 10 9 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.46835 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00280 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99788 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99743 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47061 * 60.00295 * 20 18 16 22 22 H 1.48505 * 109.46988 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00069 * 20 18 16 24 24 C 1.46839 * 111.20047 * 61.73811 * 10 9 8 25 25 C 1.53034 * 109.52552 * 298.25821 * 24 10 9 26 26 N 1.32320 * 121.60282 * 0.25797 * 5 4 3 27 27 C 1.32296 * 120.76272 * 359.47673 * 26 5 4 28 28 H 1.08996 * 109.46693 * 90.00216 * 1 2 3 29 29 H 1.09000 * 109.46830 * 209.99440 * 1 2 3 30 30 H 1.08996 * 109.47137 * 330.00063 * 1 2 3 31 31 H 1.08002 * 120.41788 * 359.95880 * 3 2 1 32 32 H 1.09005 * 109.52484 * 29.86753 * 7 6 5 33 33 H 1.09005 * 109.50142 * 57.68531 * 8 7 6 34 34 H 1.08998 * 109.50777 * 297.56428 * 8 7 6 35 35 H 1.08991 * 109.46218 * 180.80508 * 9 8 7 36 36 H 1.09005 * 109.44695 * 60.83538 * 9 8 7 37 37 H 1.09002 * 109.47401 * 49.99636 * 11 10 9 38 38 H 1.09001 * 109.46874 * 289.99649 * 11 10 9 39 39 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 41 41 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 42 42 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.46266 * 58.27078 * 24 10 9 44 44 H 1.09002 * 109.46276 * 178.24270 * 24 10 9 45 45 H 1.09006 * 109.50444 * 299.24199 * 25 24 10 46 46 H 1.09003 * 109.50687 * 179.12283 * 25 24 10 47 47 H 1.07996 * 120.41700 * 180.23385 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2154 1.1912 0.0000 4 7 3.5378 1.1551 0.0005 5 6 4.1834 0.0000 0.0005 6 8 5.5380 0.0001 0.0005 7 6 6.1867 -1.2731 0.0000 8 6 7.5326 -1.1614 -0.7217 9 6 8.2489 -2.5127 -0.6672 10 7 8.4550 -2.9028 0.7334 11 6 9.2618 -4.1270 0.8256 12 6 9.6588 -4.3601 2.2606 13 8 9.3041 -3.5832 3.1217 14 7 10.4071 -5.4325 2.5870 15 6 10.7925 -5.6593 3.9821 16 6 11.6202 -6.9151 4.0767 17 1 11.8378 -7.4867 3.1866 18 6 12.0998 -7.3342 5.2996 19 7 11.8344 -6.6383 6.3835 20 14 13.1252 -8.8911 5.4169 21 1 14.3460 -8.7437 4.5842 22 1 13.5160 -9.1211 6.8310 23 1 12.3295 -10.0459 4.9287 24 6 7.1745 -3.0624 1.4341 25 6 6.4261 -1.7276 1.4425 26 7 3.5379 -1.1551 -0.0051 27 6 2.2155 -1.1912 -0.0005 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6944 2.1372 -0.0007 32 1 5.5583 -2.0019 -0.5120 33 1 8.1460 -0.4045 -0.2327 34 1 7.3659 -0.8795 -1.7613 35 1 9.2138 -2.4326 -1.1677 36 1 7.6411 -3.2661 -1.1684 37 1 10.1574 -4.0188 0.2138 38 1 8.6776 -4.9749 0.4678 39 1 10.6904 -6.0539 1.8984 40 1 11.3767 -4.8116 4.3401 41 1 9.8966 -5.7673 4.5936 42 1 12.1721 -6.9330 7.2438 43 1 6.5719 -3.8134 0.9229 44 1 7.3591 -3.3817 2.4598 45 1 7.0220 -0.9795 1.9655 46 1 5.4688 -1.8502 1.9490 47 1 1.6944 -2.1372 -0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847032818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:41 Heat of formation + Delta-G solvation = -46.942800 kcal Electronic energy + Delta-G solvation = -27937.139895 eV Core-core repulsion = 23926.369231 eV Total energy + Delta-G solvation = -4010.770665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33824 -41.00717 -40.07560 -38.46356 -36.08906 -34.91630 -34.47307 -34.31947 -33.48125 -31.95523 -29.97840 -28.30002 -27.55309 -25.92514 -24.87504 -24.34808 -23.94202 -23.16737 -21.34176 -21.02090 -19.89263 -18.95340 -18.87928 -17.52618 -17.39060 -17.16451 -16.74477 -16.53446 -16.33493 -15.95941 -15.67717 -15.36756 -15.27770 -15.19932 -14.90445 -14.47256 -14.37696 -14.22660 -14.03273 -13.99530 -13.78439 -13.22181 -13.13868 -13.09424 -12.91436 -12.72183 -12.58506 -12.38646 -12.28720 -12.22743 -12.07234 -12.03798 -11.66676 -11.50614 -11.39064 -10.78279 -10.60909 -10.19718 -9.79198 -9.72385 -9.27995 -8.28447 -6.45383 -0.05142 0.05802 1.43100 1.47421 1.48363 1.55562 1.82797 2.27547 2.46406 2.69334 2.99921 3.01903 3.06207 3.54403 3.65086 3.66936 3.68283 3.94285 3.96405 4.01237 4.03867 4.14905 4.24632 4.30338 4.41814 4.45523 4.52330 4.67609 4.71192 4.75476 4.86863 4.90130 4.94444 5.03491 5.05569 5.11685 5.12728 5.21333 5.25512 5.42125 5.50365 5.69786 5.72193 5.85717 5.92942 6.11688 6.17203 6.66162 6.97979 7.02842 7.24497 7.56819 8.83480 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.024178 B = 0.001832 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.814369 B =15277.682181 C =15857.794995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.222 4.222 3 C 0.174 3.826 4 N -0.556 5.556 5 C 0.471 3.529 6 O -0.303 6.303 7 C 0.103 3.897 8 C -0.108 4.108 9 C 0.065 3.935 10 N -0.545 5.545 11 C 0.051 3.949 12 C 0.492 3.508 13 O -0.586 6.586 14 N -0.709 5.709 15 C 0.269 3.731 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.261 1.261 22 H -0.287 1.287 23 H -0.261 1.261 24 C 0.065 3.935 25 C -0.118 4.118 26 N -0.579 5.579 27 C 0.172 3.828 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.206 0.794 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.057 0.943 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.409 0.591 40 H -0.016 1.016 41 H -0.015 1.015 42 H 0.268 0.732 43 H 0.047 0.953 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.207 9.777 -21.619 32.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.227 4.227 3 C 0.010 3.990 4 N -0.282 5.282 5 C 0.169 3.831 6 O -0.205 6.205 7 C 0.046 3.954 8 C -0.146 4.146 9 C -0.062 4.062 10 N -0.271 5.271 11 C -0.079 4.079 12 C 0.279 3.721 13 O -0.467 6.467 14 N -0.360 5.360 15 C 0.146 3.854 16 C -0.594 4.594 17 H 0.104 0.896 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.186 1.186 24 C -0.063 4.063 25 C -0.156 4.156 26 N -0.308 5.308 27 C 0.008 3.992 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.103 0.897 31 H 0.223 0.777 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.075 0.925 37 H 0.152 0.848 38 H 0.108 0.892 39 H 0.244 0.756 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -20.865 10.883 -20.597 31.273 hybrid contribution -0.489 -1.397 0.458 1.549 sum -21.354 9.487 -20.139 30.847 Atomic orbital electron populations 1.20656 0.85990 1.04710 1.03876 1.21920 1.01106 0.94299 1.05356 1.23691 0.86533 1.00631 0.88173 1.67596 1.12168 1.28228 1.20169 1.20898 0.86137 0.85697 0.90367 1.86105 1.13091 1.34664 1.86617 1.22601 0.93864 0.82250 0.96669 1.21699 0.92823 0.98790 1.01282 1.22149 1.01885 0.95146 0.86991 1.61474 1.17202 1.33189 1.15193 1.21939 1.00849 0.93134 0.91998 1.21438 0.78014 0.80359 0.92314 1.90625 1.56248 1.46930 1.52894 1.46172 1.52606 1.26381 1.10874 1.18480 0.93171 0.95256 0.78536 1.21615 1.33631 1.09060 0.95130 0.89649 1.26096 0.97436 1.01332 0.94883 1.70140 1.46144 1.41129 0.99637 0.85195 0.78736 0.78002 0.77197 1.18598 1.21234 1.18578 1.21977 0.88754 0.95744 0.99826 1.21834 0.99575 0.97600 0.96611 1.68038 1.12934 1.28783 1.21009 1.23574 0.87197 1.00464 0.87993 0.89513 0.89897 0.89704 0.77703 0.88748 0.91155 0.88428 0.87327 0.92488 0.84790 0.89231 0.75569 0.99795 0.99748 0.92312 0.93500 0.91719 0.92624 0.92038 0.78272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 10.06 71.24 0.72 0.43 16 2 C -0.22 -2.49 5.91 -19.69 -0.12 -2.61 16 3 C 0.17 2.59 11.00 84.71 0.93 3.52 16 4 N -0.56 -13.57 10.46 -313.47 -3.28 -16.85 16 5 C 0.47 12.47 8.46 180.57 1.53 14.00 16 6 O -0.30 -8.63 9.85 -87.53 -0.86 -9.49 16 7 C 0.10 2.51 2.43 30.68 0.07 2.58 16 8 C -0.11 -2.21 5.75 30.65 0.18 -2.03 16 9 C 0.07 1.21 5.46 86.33 0.47 1.68 16 10 N -0.54 -14.86 4.40 -900.93 -3.96 -18.82 16 11 C 0.05 1.33 5.45 85.56 0.47 1.79 16 12 C 0.49 19.63 7.50 87.66 0.66 20.28 16 13 O -0.59 -29.58 14.32 -3.03 -0.04 -29.62 16 14 N -0.71 -29.77 5.55 -466.78 -2.59 -32.35 16 15 C 0.27 14.92 5.43 85.63 0.46 15.38 16 16 C -0.56 -30.40 9.28 25.60 0.24 -30.16 16 17 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.11 5.46 84.66 0.46 0.57 16 19 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 20 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 22 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 C 0.06 1.93 5.10 86.33 0.44 2.37 16 25 C -0.12 -3.41 5.72 30.65 0.18 -3.24 16 26 N -0.58 -12.97 8.66 -313.47 -2.71 -15.69 16 27 C 0.17 2.50 11.00 84.71 0.93 3.44 16 28 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 0.12 8.10 -2.39 -0.02 0.10 16 30 H 0.08 0.09 8.10 -2.39 -0.02 0.07 16 31 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.09 2.18 6.95 -2.38 -0.02 2.17 16 33 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 34 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 1.56 8.01 -2.39 -0.02 1.54 16 36 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.13 2.64 7.99 -2.39 -0.02 2.62 16 38 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 39 H 0.41 13.80 8.32 -92.71 -0.77 13.02 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 42 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 44 H 0.06 2.47 5.78 -2.39 -0.01 2.45 16 45 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.20 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -82.86 388.09 -3.31 -86.17 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.21 Total: 20.83 kcal Atomic # 6 Polarization: 20.39 SS G_CDS: 7.62 Total: 28.01 kcal Atomic # 7 Polarization: -128.09 SS G_CDS: -12.26 Total: -140.35 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.91 Total: -39.11 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -82.86 -3.31 -86.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847032818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.226 kcal (2) G-P(sol) polarization free energy of solvation -82.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds