Wall clock time and date at job start Tue Mar 31 2020 18:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34492 * 126.83489 * 2 1 4 4 N 1.36445 * 108.85670 * 180.02562 * 3 2 1 5 5 H 0.97000 * 124.84639 * 180.02562 * 4 3 2 6 6 C 1.34659 * 110.29904 * 359.74421 * 4 3 2 7 7 C 1.50697 * 125.80036 * 180.29361 * 6 4 3 8 8 C 1.50695 * 109.47535 * 265.13698 * 7 6 4 9 9 N 1.34778 * 120.00322 * 180.02562 * 8 7 6 10 10 O 1.21279 * 119.99908 * 0.02562 * 8 7 6 11 11 C 1.36771 * 108.39769 * 0.41530 * 6 4 3 12 12 C 1.47262 * 126.94199 * 179.87257 * 11 6 4 13 13 O 1.21627 * 119.99581 * 269.70427 * 12 11 6 14 14 N 1.34775 * 120.00094 * 89.70536 * 12 11 6 15 15 C 1.47019 * 125.64595 * 180.02562 * 14 12 11 16 16 C 1.54330 * 107.26866 * 181.01194 * 15 14 12 17 17 H 1.08996 * 110.71860 * 263.82642 * 16 15 14 18 18 C 1.53000 * 110.71573 * 140.55848 * 16 15 14 19 19 C 1.55157 * 102.94049 * 22.19588 * 16 15 14 20 20 H 1.09001 * 110.99990 * 206.42006 * 19 16 15 21 21 N 1.46501 * 111.00370 * 82.61123 * 19 16 15 22 22 C 1.36937 * 119.99933 * 155.00091 * 21 19 16 23 23 H 1.08000 * 119.99596 * 359.97438 * 22 21 19 24 24 C 1.38807 * 120.00070 * 179.97438 * 22 21 19 25 25 N 1.31622 * 120.00308 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00156 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47083 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47261 * 119.99616 * 26 24 22 29 29 H 1.48503 * 109.47142 * 239.99835 * 26 24 22 30 30 C 1.47426 * 125.65028 * 359.97438 * 14 12 11 31 31 H 1.08996 * 109.46986 * 269.97187 * 1 2 3 32 32 H 1.08999 * 109.46848 * 29.97612 * 1 2 3 33 33 H 1.08998 * 109.46604 * 149.97551 * 1 2 3 34 34 H 1.08006 * 125.56557 * 359.97438 * 3 2 1 35 35 H 1.09003 * 109.47609 * 25.14144 * 7 6 4 36 36 H 1.08999 * 109.46772 * 145.13525 * 7 6 4 37 37 H 0.96999 * 119.99757 * 359.97438 * 9 8 7 38 38 H 0.96997 * 120.00007 * 180.02562 * 9 8 7 39 39 H 1.09000 * 109.88042 * 61.59824 * 15 14 12 40 40 H 1.08996 * 109.88551 * 300.42965 * 15 14 12 41 41 H 1.09003 * 109.47456 * 306.47299 * 18 16 15 42 42 H 1.09001 * 109.47438 * 66.47842 * 18 16 15 43 43 H 1.09004 * 109.46958 * 186.48227 * 18 16 15 44 44 H 0.96996 * 119.99797 * 334.99394 * 21 19 16 45 45 H 0.96991 * 120.00570 * 179.97438 * 25 24 22 46 46 H 1.09004 * 110.36498 * 37.07621 * 30 14 12 47 47 H 1.09000 * 110.45813 * 274.80371 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2414 -0.0003 6 6 3.6657 -0.6902 0.0047 7 6 4.9226 -1.5215 0.0121 8 6 5.2800 -1.9044 -1.4009 9 7 6.3743 -2.6541 -1.6397 10 8 4.5830 -1.5380 -2.3233 11 6 2.3864 -1.1741 -0.0006 12 6 1.9750 -2.5881 -0.0003 13 8 1.8049 -3.1721 -1.0535 14 7 1.7870 -3.2349 1.1671 15 6 1.3788 -4.6399 1.3120 16 6 1.2671 -4.9309 2.8235 17 1 2.1834 -5.3879 3.1970 18 6 0.0581 -5.8221 3.1151 19 6 1.0687 -3.5190 3.4354 20 1 1.4265 -3.4855 4.4645 21 7 -0.3343 -3.1048 3.3565 22 6 -0.8282 -2.1867 4.2444 23 1 -0.1834 -1.7683 5.0031 24 6 -2.1574 -1.7939 4.1693 25 7 -2.9430 -2.3035 3.2443 26 14 -2.8313 -0.5420 5.3809 27 1 -1.7536 -0.1265 6.3142 28 1 -3.3303 0.6446 4.6405 29 1 -3.9460 -1.1494 6.1516 30 6 1.9576 -2.6512 2.5101 31 1 -0.3633 -0.0005 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3632 -0.8898 -0.5142 34 1 1.9867 2.1059 -0.0004 35 1 5.7374 -0.9443 0.4493 36 1 4.7585 -2.4230 0.6024 37 1 6.9320 -2.9469 -0.9021 38 1 6.6045 -2.9003 -2.5492 39 1 2.1284 -5.2918 0.8634 40 1 0.4130 -4.7967 0.8319 41 1 -0.8366 -5.3736 2.6832 42 1 0.2186 -6.8071 2.6769 43 1 -0.0692 -5.9203 4.1932 44 1 -0.9133 -3.4809 2.6752 45 1 -3.8719 -2.0293 3.1920 46 1 1.6177 -1.6156 2.5195 47 1 3.0005 -2.7103 2.8214 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939172022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:30 Heat of formation + Delta-G solvation = -45.735684 kcal Electronic energy + Delta-G solvation = -30362.866634 eV Core-core repulsion = 26352.148314 eV Total energy + Delta-G solvation = -4010.718320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.33443 -40.71089 -40.17624 -38.74229 -35.57449 -34.70716 -33.93801 -33.68284 -32.51842 -32.10313 -29.50471 -29.21535 -27.38281 -26.76424 -25.72184 -24.03310 -22.53434 -21.88900 -20.60311 -20.34370 -19.65754 -19.17108 -18.78809 -18.01449 -17.56196 -17.47432 -17.23773 -16.40155 -16.22335 -15.83212 -15.60528 -15.34874 -15.24897 -14.68535 -14.59895 -14.38574 -14.23639 -14.12622 -13.84274 -13.57978 -13.49456 -13.38447 -13.33494 -13.04224 -12.94518 -12.85662 -12.76981 -12.25174 -12.18058 -12.05001 -11.92995 -11.45079 -11.33101 -11.13644 -11.01751 -10.89397 -10.64429 -9.60452 -9.42187 -9.03069 -8.87657 -7.85351 -5.12814 1.11795 1.50830 1.51450 1.60706 1.60942 1.64566 1.66901 2.14985 2.48845 2.61867 2.75698 3.46213 3.54389 3.59725 3.95205 3.99434 4.03621 4.12629 4.16249 4.20770 4.26784 4.39098 4.47817 4.54806 4.63416 4.68434 4.74087 4.80192 4.81024 4.92640 4.98843 5.02696 5.07177 5.13212 5.27612 5.29082 5.32513 5.51577 5.58507 5.65326 5.83813 5.90366 6.03756 6.34823 6.46768 6.64508 6.76974 7.27107 7.38160 7.42115 8.18112 8.40508 9.38274 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.004217 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.281335 B = 6638.099868 C = 7890.933986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.168 4.168 3 C 0.009 3.991 4 N -0.527 5.527 5 H 0.434 0.566 6 C 0.085 3.915 7 C -0.074 4.074 8 C 0.509 3.491 9 N -0.836 5.836 10 O -0.583 6.583 11 C -0.224 4.224 12 C 0.601 3.399 13 O -0.597 6.597 14 N -0.596 5.596 15 C 0.112 3.888 16 C -0.096 4.096 17 H 0.124 0.876 18 C -0.125 4.125 19 C 0.159 3.841 20 H 0.091 0.909 21 N -0.719 5.719 22 C -0.227 4.227 23 H 0.083 0.917 24 C -0.072 4.072 25 N -0.970 5.970 26 Si 0.963 3.037 27 H -0.261 1.261 28 H -0.302 1.302 29 H -0.300 1.300 30 C 0.087 3.913 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.022 0.978 34 H 0.204 0.796 35 H 0.157 0.843 36 H 0.123 0.877 37 H 0.420 0.580 38 H 0.406 0.594 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.027 0.973 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.371 0.629 45 H 0.246 0.754 46 H 0.054 0.946 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.422 1.828 -0.947 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.174 4.174 3 C -0.120 4.120 4 N -0.123 5.123 5 H 0.274 0.726 6 C -0.032 4.032 7 C -0.114 4.114 8 C 0.293 3.707 9 N -0.400 5.400 10 O -0.462 6.462 11 C -0.235 4.235 12 C 0.390 3.610 13 O -0.479 6.479 14 N -0.327 5.327 15 C -0.010 4.010 16 C -0.116 4.116 17 H 0.142 0.858 18 C -0.183 4.183 19 C 0.049 3.951 20 H 0.109 0.891 21 N -0.357 5.357 22 C -0.359 4.359 23 H 0.101 0.899 24 C -0.264 4.264 25 N -0.621 5.621 26 Si 0.793 3.207 27 H -0.185 1.185 28 H -0.230 1.230 29 H -0.228 1.228 30 C -0.038 4.038 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.041 0.959 34 H 0.220 0.780 35 H 0.175 0.825 36 H 0.141 0.859 37 H 0.252 0.748 38 H 0.237 0.763 39 H 0.094 0.906 40 H 0.049 0.951 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.203 0.797 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 23.910 2.102 -1.827 24.072 hybrid contribution -1.089 0.409 -0.220 1.184 sum 22.821 2.511 -2.047 23.050 Atomic orbital electron populations 1.19926 0.90888 1.00985 1.00826 1.20571 0.94937 0.91856 1.10060 1.21785 0.82063 0.99423 1.08727 1.41126 1.08415 1.05153 1.57648 0.72574 1.19376 0.93708 0.84279 1.05864 1.20344 0.94962 1.01583 0.94527 1.20856 0.80454 0.77904 0.91471 1.43628 1.27689 1.54830 1.13902 1.90824 1.51771 1.55898 1.47692 1.19920 0.94328 0.91376 1.17854 1.17586 0.75787 0.85851 0.81740 1.90716 1.54692 1.69684 1.32838 1.48413 1.65806 1.12292 1.06165 1.22029 0.98780 0.82308 0.97902 1.22524 1.00768 0.96180 0.92115 0.85841 1.21510 0.96468 0.98547 1.01732 1.21707 0.84428 0.91626 0.97369 0.89145 1.42517 1.06602 1.49470 1.37148 1.19665 0.93519 1.14810 1.07872 0.89898 1.25421 0.97294 1.02890 1.00819 1.69845 1.05779 1.48749 1.37721 0.85217 0.78217 0.78575 0.78645 1.18474 1.22966 1.22789 1.23220 1.00611 0.98599 0.81400 0.93227 0.89904 0.95896 0.77963 0.82513 0.85888 0.74774 0.76296 0.90648 0.95078 0.95335 0.91282 0.92171 0.79694 0.94552 0.92784 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.72 10.35 71.24 0.74 -1.98 16 2 C -0.17 -6.03 6.36 -18.51 -0.12 -6.15 16 3 C 0.01 0.24 11.82 83.12 0.98 1.22 16 4 N -0.53 -11.00 5.90 -182.72 -1.08 -12.08 16 5 H 0.43 5.00 8.96 -92.71 -0.83 4.17 16 6 C 0.09 2.25 5.67 41.78 0.24 2.49 16 7 C -0.07 -1.27 6.01 29.10 0.17 -1.09 16 8 C 0.51 11.50 8.09 87.66 0.71 12.21 16 9 N -0.84 -10.15 8.87 -173.54 -1.54 -11.69 16 10 O -0.58 -20.98 16.87 -3.03 -0.05 -21.03 16 11 C -0.22 -8.25 4.94 -19.04 -0.09 -8.34 16 12 C 0.60 25.38 7.33 86.62 0.63 26.02 16 13 O -0.60 -30.45 17.43 -4.12 -0.07 -30.53 16 14 N -0.60 -21.94 3.33 -815.85 -2.71 -24.66 16 15 C 0.11 3.86 6.46 86.73 0.56 4.42 16 16 C -0.10 -2.80 3.42 -9.60 -0.03 -2.83 16 17 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 18 C -0.12 -3.93 8.71 71.98 0.63 -3.30 16 19 C 0.16 5.56 3.47 46.38 0.16 5.72 16 20 H 0.09 2.87 8.09 -2.39 -0.02 2.85 16 21 N -0.72 -34.12 4.59 -316.39 -1.45 -35.58 16 22 C -0.23 -11.84 9.96 84.03 0.84 -11.01 16 23 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 24 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 25 N -0.97 -59.56 13.06 21.65 0.28 -59.28 16 26 Si 0.96 45.42 29.55 68.60 2.03 47.45 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 30 C 0.09 2.84 6.37 86.85 0.55 3.39 16 31 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.20 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.16 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.12 1.93 8.05 -2.39 -0.02 1.92 16 37 H 0.42 1.53 8.83 -92.71 -0.82 0.71 16 38 H 0.41 4.76 8.93 -92.71 -0.83 3.94 16 39 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.03 1.27 7.76 -2.39 -0.02 1.25 16 41 H 0.03 1.12 6.48 -2.39 -0.02 1.11 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.37 20.06 6.37 -92.71 -0.59 19.47 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.05 2.10 7.69 -2.38 -0.02 2.08 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -91.49 394.04 -0.19 -91.69 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -2.03 Total: 38.50 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 6.44 Total: 17.20 kcal Atomic # 7 Polarization: -136.78 SS G_CDS: -6.50 Total: -143.28 kcal Atomic # 8 Polarization: -51.43 SS G_CDS: -0.12 Total: -51.56 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -91.49 -0.19 -91.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.951 kcal (2) G-P(sol) polarization free energy of solvation -91.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds