Wall clock time and date at job start Tue Mar 31 2020 18:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83224 * 2 1 4 4 N 1.36450 * 108.85787 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.85168 * 180.02562 * 4 3 2 6 6 C 1.34654 * 110.29573 * 359.97438 * 4 3 2 7 7 C 1.50704 * 125.80345 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46663 * 265.86800 * 7 6 4 9 9 N 1.34777 * 119.99800 * 174.96426 * 8 7 6 10 10 O 1.21275 * 120.00145 * 354.96529 * 8 7 6 11 11 C 1.36769 * 108.39834 * 0.26443 * 6 4 3 12 12 C 1.47268 * 126.94170 * 179.69633 * 11 6 4 13 13 O 1.21621 * 120.00225 * 274.84712 * 12 11 6 14 14 N 1.34780 * 119.99720 * 94.84688 * 12 11 6 15 15 C 1.47422 * 125.64918 * 354.68528 * 14 12 11 16 16 C 1.55130 * 104.72132 * 155.81469 * 15 14 12 17 17 H 1.09001 * 111.19506 * 279.19307 * 16 15 14 18 18 N 1.46497 * 110.90593 * 155.27426 * 16 15 14 19 19 C 1.36943 * 119.99853 * 92.97719 * 18 16 15 20 20 H 1.07995 * 120.00050 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00021 * 180.02562 * 19 18 16 22 22 N 1.31613 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99807 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47155 * 90.00125 * 23 21 19 25 25 H 1.48497 * 109.47191 * 209.99830 * 23 21 19 26 26 H 1.48504 * 109.47334 * 330.00028 * 23 21 19 27 27 C 1.55159 * 101.48533 * 37.29756 * 16 15 14 28 28 H 1.09004 * 110.72027 * 82.69536 * 27 16 15 29 29 C 1.53000 * 110.71971 * 205.96697 * 27 16 15 30 30 C 1.47016 * 125.64439 * 174.99456 * 14 12 11 31 31 H 1.09004 * 109.47236 * 89.97470 * 1 2 3 32 32 H 1.08999 * 109.46784 * 209.97488 * 1 2 3 33 33 H 1.08995 * 109.47412 * 329.97511 * 1 2 3 34 34 H 1.08000 * 125.57486 * 0.03109 * 3 2 1 35 35 H 1.08994 * 109.47474 * 145.86208 * 7 6 4 36 36 H 1.09007 * 109.46806 * 25.85845 * 7 6 4 37 37 H 0.96998 * 120.00234 * 179.97438 * 9 8 7 38 38 H 0.97002 * 120.00075 * 359.72616 * 9 8 7 39 39 H 1.08995 * 110.36953 * 274.74711 * 15 14 12 40 40 H 1.08999 * 110.36753 * 37.06927 * 15 14 12 41 41 H 0.96998 * 120.00335 * 272.98465 * 18 16 15 42 42 H 0.97006 * 120.00065 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.46688 * 174.97513 * 29 27 16 44 44 H 1.09000 * 109.46822 * 294.97320 * 29 27 16 45 45 H 1.08997 * 109.46937 * 54.97427 * 29 27 16 46 46 H 1.09000 * 109.88540 * 300.43932 * 30 14 12 47 47 H 1.09002 * 109.88719 * 61.45566 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2414 -0.0003 6 6 3.6656 -0.6901 -0.0004 7 6 4.9226 -1.5215 -0.0003 8 6 5.2849 -1.8842 -1.4175 9 7 6.4331 -2.5425 -1.6721 10 8 4.5434 -1.5836 -2.3289 11 6 2.3864 -1.1740 -0.0057 12 6 1.9750 -2.5880 -0.0136 13 8 1.8929 -3.1916 -1.0663 14 7 1.6895 -3.2133 1.1457 15 6 1.8525 -2.6398 2.4940 16 6 0.8566 -3.4312 3.3820 17 1 -0.1572 -3.0447 3.2779 18 7 1.2807 -3.4162 4.7842 19 6 0.8033 -2.4540 5.6336 20 1 0.1139 -1.7065 5.2700 21 6 1.2056 -2.4395 6.9622 22 7 0.7471 -1.5144 7.7784 23 14 2.3986 -3.7320 7.5909 24 1 3.7910 -3.2440 7.4226 25 1 2.1353 -3.9907 9.0293 26 1 2.2181 -4.9888 6.8208 27 6 0.9726 -4.8570 2.7811 28 1 1.8350 -5.3805 3.1939 29 6 -0.3119 -5.6524 3.0227 30 6 1.1699 -4.5825 1.2753 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3634 0.8897 0.5142 34 1 1.9868 2.1059 0.0005 35 1 4.7565 -2.4313 0.5765 36 1 5.7358 -0.9505 0.4478 37 1 6.6662 -2.7763 -2.5841 38 1 7.0281 -2.7794 -0.9435 39 1 2.8741 -2.7823 2.8459 40 1 1.5964 -1.5803 2.4891 41 1 1.8997 -4.0877 5.1109 42 1 1.0280 -1.5045 8.7069 43 1 -0.2432 -6.6155 2.5171 44 1 -0.4443 -5.8123 4.0927 45 1 -1.1630 -5.0958 2.6304 46 1 0.2160 -4.6678 0.7549 47 1 1.8848 -5.2914 0.8575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939172024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:34 Heat of formation + Delta-G solvation = -15.250375 kcal Electronic energy + Delta-G solvation = -29871.489440 eV Core-core repulsion = 25862.093062 eV Total energy + Delta-G solvation = -4009.396378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34787 -39.43474 -39.23152 -37.32396 -34.12126 -33.86353 -32.82695 -32.49301 -31.50647 -31.00240 -28.43121 -27.80698 -26.27940 -25.78181 -23.80616 -22.37093 -21.25484 -20.78199 -20.05407 -19.37941 -18.38676 -17.93350 -17.57584 -17.16007 -16.75028 -16.24677 -15.99639 -15.28214 -14.72411 -14.48333 -14.40268 -14.16449 -13.67282 -13.47781 -13.29251 -13.23170 -13.11678 -13.08007 -12.62152 -12.58538 -12.51760 -12.43435 -12.03992 -11.92924 -11.75513 -11.36713 -11.15036 -11.13599 -10.76485 -10.62013 -10.35605 -10.15461 -10.00919 -9.87898 -9.68769 -9.60109 -9.03324 -8.39943 -8.24770 -8.04864 -7.37723 -5.84453 -3.21747 2.09755 2.49245 2.68844 2.94296 3.09789 3.30862 3.33579 3.39687 3.48290 3.54844 4.42118 4.51465 4.71275 4.78048 4.84506 5.06744 5.11326 5.17164 5.18511 5.27661 5.47524 5.50577 5.52879 5.60578 5.76695 5.77713 5.83908 5.91370 5.92174 6.01143 6.15913 6.18374 6.19217 6.30578 6.37174 6.43718 6.52317 6.55956 6.65047 6.80009 6.90306 7.03616 7.09133 7.52882 7.88450 7.92202 8.09586 8.34205 8.56477 9.11282 9.83308 10.01907 11.33390 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003697 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.528699 B = 7571.317652 C = 7777.917063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.130 4.130 3 C -0.006 4.006 4 N -0.546 5.546 5 H 0.412 0.588 6 C 0.077 3.923 7 C -0.078 4.078 8 C 0.513 3.487 9 N -0.860 5.860 10 O -0.514 6.514 11 C -0.180 4.180 12 C 0.603 3.397 13 O -0.540 6.540 14 N -0.611 5.611 15 C 0.080 3.920 16 C 0.182 3.818 17 H 0.077 0.923 18 N -0.735 5.735 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.009 3.991 22 N -0.930 5.930 23 Si 0.882 3.118 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.276 1.276 27 C -0.118 4.118 28 H 0.080 0.920 29 C -0.134 4.134 30 C 0.117 3.883 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.169 0.831 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.401 0.599 38 H 0.400 0.600 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.603 0.144 -15.114 17.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C -0.135 4.135 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.038 4.038 7 C -0.119 4.119 8 C 0.297 3.703 9 N -0.425 5.425 10 O -0.388 6.388 11 C -0.191 4.191 12 C 0.391 3.609 13 O -0.417 6.417 14 N -0.345 5.345 15 C -0.046 4.046 16 C 0.071 3.929 17 H 0.095 0.905 18 N -0.376 5.376 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.187 4.187 22 N -0.577 5.577 23 Si 0.712 3.288 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.138 4.138 28 H 0.098 0.902 29 C -0.192 4.192 30 C -0.006 4.006 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.186 0.814 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.232 0.768 38 H 0.228 0.772 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.196 0.804 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.904 0.443 -16.067 18.375 hybrid contribution 1.835 -0.750 0.705 2.104 sum 10.740 -0.306 -15.362 18.746 Atomic orbital electron populations 1.20131 0.89613 1.02479 1.01579 1.20381 0.95185 0.90305 1.07790 1.21419 0.82063 0.98995 1.10993 1.41173 1.08207 1.05579 1.59112 0.75156 1.18999 0.93748 0.83240 1.07834 1.20181 0.95140 1.01171 0.95380 1.20462 0.80916 0.77661 0.91275 1.43830 1.23675 1.62080 1.12915 1.90833 1.49136 1.52234 1.46554 1.19833 0.92308 0.92357 1.14588 1.17183 0.76496 0.85109 0.82075 1.90779 1.53049 1.67101 1.30808 1.48498 1.64266 1.15203 1.06487 1.23346 1.00964 0.99738 0.80522 1.21398 0.96370 0.91187 0.83974 0.90492 1.42638 1.55018 1.34939 1.04964 1.19084 1.22725 1.05728 0.90263 0.88977 1.24656 0.99851 0.98084 0.96084 1.69695 1.47650 1.35236 1.05135 0.86599 0.81717 0.82130 0.78357 1.21113 1.21706 1.20210 1.22560 0.99312 0.98293 0.93639 0.90191 1.21662 0.96226 0.98864 1.02446 1.21935 0.98878 0.83398 0.96421 0.91928 0.91811 0.91593 0.81376 0.86676 0.87824 0.76793 0.77198 0.91964 0.90507 0.80356 0.92972 0.93186 0.91599 0.92514 0.91596 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.35 36.01 0.37 -0.71 16 2 C -0.13 -1.93 6.36 -102.54 -0.65 -2.58 16 3 C -0.01 -0.07 11.82 -16.82 -0.20 -0.27 16 4 N -0.55 -6.09 5.90 -9.11 -0.05 -6.15 16 5 H 0.41 3.10 8.96 -40.82 -0.37 2.73 16 6 C 0.08 1.05 5.67 -81.88 -0.46 0.59 16 7 C -0.08 -0.81 6.01 -29.03 -0.17 -0.99 16 8 C 0.51 6.18 8.09 -10.98 -0.09 6.09 16 9 N -0.86 -6.35 8.87 31.22 0.28 -6.07 16 10 O -0.51 -8.92 16.88 5.56 0.09 -8.83 16 11 C -0.18 -2.95 4.90 -103.35 -0.51 -3.46 16 12 C 0.60 10.94 7.31 -12.59 -0.09 10.85 16 13 O -0.54 -11.59 17.44 5.26 0.09 -11.50 16 14 N -0.61 -10.04 3.32 -171.71 -0.57 -10.61 16 15 C 0.08 1.36 6.43 -2.41 -0.02 1.34 16 16 C 0.18 3.27 3.18 -65.66 -0.21 3.07 16 17 H 0.08 1.46 7.99 -51.93 -0.41 1.05 16 18 N -0.73 -15.92 5.04 -51.23 -0.26 -16.18 16 19 C -0.25 -6.53 10.44 -15.05 -0.16 -6.69 16 20 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 21 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 22 N -0.93 -27.97 13.97 55.49 0.78 -27.20 16 23 Si 0.88 20.87 27.74 -169.99 -4.71 16.16 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.10 6.52 56.52 0.37 -5.73 16 27 C -0.12 -1.76 3.19 -88.78 -0.28 -2.04 16 28 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 29 C -0.13 -1.83 9.13 37.16 0.34 -1.49 16 30 C 0.12 1.75 6.47 -3.06 -0.02 1.73 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.17 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.20 8.04 -51.93 -0.42 0.78 16 36 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.40 2.69 8.93 -40.82 -0.36 2.32 16 38 H 0.40 1.60 8.83 -40.82 -0.36 1.24 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.38 7.61 -51.93 -0.40 0.99 16 41 H 0.36 7.75 5.62 -40.82 -0.23 7.52 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 46 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 47 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 394.24 15.07 5.94 5.94 Total: -1.00 -37.79 394.24 -7.85 -45.64 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -7.19 Total: 13.21 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: -2.25 Total: 5.59 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: 0.17 Total: -66.21 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.19 Total: -20.33 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.71 Total: 16.16 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.79 -7.85 -45.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.392 kcal (2) G-P(sol) polarization free energy of solvation -37.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds