Wall clock time and date at job start Tue Mar 31 2020 18:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34484 * 126.83224 * 2 1 4 4 N 1.36450 * 108.85787 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.85168 * 180.02562 * 4 3 2 6 6 C 1.34654 * 110.29573 * 359.97438 * 4 3 2 7 7 C 1.50704 * 125.80345 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.46663 * 265.86800 * 7 6 4 9 9 N 1.34777 * 119.99800 * 174.96426 * 8 7 6 10 10 O 1.21275 * 120.00145 * 354.96529 * 8 7 6 11 11 C 1.36769 * 108.39834 * 0.26443 * 6 4 3 12 12 C 1.47268 * 126.94170 * 179.69633 * 11 6 4 13 13 O 1.21621 * 120.00225 * 274.84712 * 12 11 6 14 14 N 1.34780 * 119.99720 * 94.84688 * 12 11 6 15 15 C 1.47422 * 125.64918 * 354.68528 * 14 12 11 16 16 C 1.55130 * 104.72132 * 155.81469 * 15 14 12 17 17 H 1.09001 * 111.19506 * 279.19307 * 16 15 14 18 18 N 1.46497 * 110.90593 * 155.27426 * 16 15 14 19 19 C 1.36943 * 119.99853 * 92.97719 * 18 16 15 20 20 H 1.07995 * 120.00050 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00021 * 180.02562 * 19 18 16 22 22 N 1.31613 * 120.00018 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99807 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47155 * 90.00125 * 23 21 19 25 25 H 1.48497 * 109.47191 * 209.99830 * 23 21 19 26 26 H 1.48504 * 109.47334 * 330.00028 * 23 21 19 27 27 C 1.55159 * 101.48533 * 37.29756 * 16 15 14 28 28 H 1.09004 * 110.72027 * 82.69536 * 27 16 15 29 29 C 1.53000 * 110.71971 * 205.96697 * 27 16 15 30 30 C 1.47016 * 125.64439 * 174.99456 * 14 12 11 31 31 H 1.09004 * 109.47236 * 89.97470 * 1 2 3 32 32 H 1.08999 * 109.46784 * 209.97488 * 1 2 3 33 33 H 1.08995 * 109.47412 * 329.97511 * 1 2 3 34 34 H 1.08000 * 125.57486 * 0.03109 * 3 2 1 35 35 H 1.08994 * 109.47474 * 145.86208 * 7 6 4 36 36 H 1.09007 * 109.46806 * 25.85845 * 7 6 4 37 37 H 0.96998 * 120.00234 * 179.97438 * 9 8 7 38 38 H 0.97002 * 120.00075 * 359.72616 * 9 8 7 39 39 H 1.08995 * 110.36953 * 274.74711 * 15 14 12 40 40 H 1.08999 * 110.36753 * 37.06927 * 15 14 12 41 41 H 0.96998 * 120.00335 * 272.98465 * 18 16 15 42 42 H 0.97006 * 120.00065 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.46688 * 174.97513 * 29 27 16 44 44 H 1.09000 * 109.46822 * 294.97320 * 29 27 16 45 45 H 1.08997 * 109.46937 * 54.97427 * 29 27 16 46 46 H 1.09000 * 109.88540 * 300.43932 * 30 14 12 47 47 H 1.09002 * 109.88719 * 61.45566 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0006 5 1 4.3840 1.2414 -0.0003 6 6 3.6656 -0.6901 -0.0004 7 6 4.9226 -1.5215 -0.0003 8 6 5.2849 -1.8842 -1.4175 9 7 6.4331 -2.5425 -1.6721 10 8 4.5434 -1.5836 -2.3289 11 6 2.3864 -1.1740 -0.0057 12 6 1.9750 -2.5880 -0.0136 13 8 1.8929 -3.1916 -1.0663 14 7 1.6895 -3.2133 1.1457 15 6 1.8525 -2.6398 2.4940 16 6 0.8566 -3.4312 3.3820 17 1 -0.1572 -3.0447 3.2779 18 7 1.2807 -3.4162 4.7842 19 6 0.8033 -2.4540 5.6336 20 1 0.1139 -1.7065 5.2700 21 6 1.2056 -2.4395 6.9622 22 7 0.7471 -1.5144 7.7784 23 14 2.3986 -3.7320 7.5909 24 1 3.7910 -3.2440 7.4226 25 1 2.1353 -3.9907 9.0293 26 1 2.2181 -4.9888 6.8208 27 6 0.9726 -4.8570 2.7811 28 1 1.8350 -5.3805 3.1939 29 6 -0.3119 -5.6524 3.0227 30 6 1.1699 -4.5825 1.2753 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3634 0.8897 0.5142 34 1 1.9868 2.1059 0.0005 35 1 4.7565 -2.4313 0.5765 36 1 5.7358 -0.9505 0.4478 37 1 6.6662 -2.7763 -2.5841 38 1 7.0281 -2.7794 -0.9435 39 1 2.8741 -2.7823 2.8459 40 1 1.5964 -1.5803 2.4891 41 1 1.8997 -4.0877 5.1109 42 1 1.0280 -1.5045 8.7069 43 1 -0.2432 -6.6155 2.5171 44 1 -0.4443 -5.8123 4.0927 45 1 -1.1630 -5.0958 2.6304 46 1 0.2160 -4.6678 0.7549 47 1 1.8848 -5.2914 0.8575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939172024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:33 Heat of formation + Delta-G solvation = -45.346131 kcal Electronic energy + Delta-G solvation = -29872.794490 eV Core-core repulsion = 25862.093062 eV Total energy + Delta-G solvation = -4010.701428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.35784 -40.75633 -40.19674 -38.78517 -35.91110 -34.72531 -34.03723 -33.69319 -32.94555 -32.37872 -29.52830 -29.34511 -27.43069 -26.77476 -25.59302 -23.69998 -22.42169 -21.96247 -21.45728 -20.36362 -19.61070 -19.47658 -18.86093 -18.05056 -17.62001 -17.52979 -17.38295 -16.46902 -16.15043 -15.98130 -15.58811 -15.36554 -14.97722 -14.78050 -14.60916 -14.46546 -14.39366 -14.26010 -14.12150 -13.79778 -13.54755 -13.44819 -13.41258 -13.13868 -13.04961 -12.91944 -12.90073 -12.21454 -12.19793 -12.10764 -11.90360 -11.77976 -11.43095 -11.15412 -11.06857 -10.91302 -10.66991 -9.69287 -9.44315 -9.28378 -9.03962 -7.96901 -5.32340 1.08659 1.43973 1.46666 1.54151 1.56316 1.61227 1.65294 2.05646 2.41798 2.53621 2.72230 3.32755 3.37879 3.54657 3.71225 3.89746 3.96484 4.07353 4.07921 4.16340 4.24914 4.35323 4.38083 4.43268 4.53903 4.59923 4.63291 4.71721 4.85276 4.88304 4.93420 4.99590 5.08795 5.11996 5.12754 5.24597 5.28802 5.38945 5.46434 5.82510 5.84696 5.87907 6.02614 6.25781 6.42558 6.52254 6.72637 7.10985 7.19885 7.34267 7.84093 8.05222 9.24187 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.003697 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.528699 B = 7571.317652 C = 7777.917063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.168 4.168 3 C 0.006 3.994 4 N -0.533 5.533 5 H 0.432 0.568 6 C 0.079 3.921 7 C -0.078 4.078 8 C 0.511 3.489 9 N -0.836 5.836 10 O -0.577 6.577 11 C -0.228 4.228 12 C 0.606 3.394 13 O -0.582 6.582 14 N -0.606 5.606 15 C 0.096 3.904 16 C 0.176 3.824 17 H 0.060 0.940 18 N -0.732 5.732 19 C -0.230 4.230 20 H 0.057 0.943 21 C -0.057 4.057 22 N -0.983 5.983 23 Si 0.950 3.050 24 H -0.277 1.277 25 H -0.301 1.301 26 H -0.247 1.247 27 C -0.103 4.103 28 H 0.094 0.906 29 C -0.132 4.132 30 C 0.116 3.884 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.204 0.796 35 H 0.117 0.883 36 H 0.149 0.851 37 H 0.407 0.593 38 H 0.419 0.581 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.370 0.630 42 H 0.257 0.743 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.142 -0.826 -15.314 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.175 4.175 3 C -0.123 4.123 4 N -0.128 5.128 5 H 0.271 0.729 6 C -0.038 4.038 7 C -0.119 4.119 8 C 0.296 3.704 9 N -0.401 5.401 10 O -0.455 6.455 11 C -0.238 4.238 12 C 0.396 3.604 13 O -0.462 6.462 14 N -0.338 5.338 15 C -0.029 4.029 16 C 0.066 3.934 17 H 0.078 0.922 18 N -0.374 5.374 19 C -0.361 4.361 20 H 0.075 0.925 21 C -0.249 4.249 22 N -0.633 5.633 23 Si 0.778 3.222 24 H -0.203 1.203 25 H -0.229 1.229 26 H -0.171 1.171 27 C -0.123 4.123 28 H 0.112 0.888 29 C -0.190 4.190 30 C -0.007 4.007 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.221 0.779 35 H 0.135 0.865 36 H 0.167 0.833 37 H 0.238 0.762 38 H 0.251 0.749 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.204 0.796 42 H 0.066 0.934 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.512 -0.566 -16.285 19.951 hybrid contribution 1.021 -0.394 0.685 1.291 sum 12.534 -0.960 -15.599 20.034 Atomic orbital electron populations 1.20083 0.89533 1.02260 1.01461 1.20689 0.95854 0.90970 1.09963 1.21924 0.81946 0.99860 1.08612 1.41217 1.08818 1.05158 1.57617 0.72864 1.19384 0.94007 0.84340 1.06118 1.20324 0.95313 1.01491 0.94738 1.20729 0.81189 0.77322 0.91192 1.43639 1.22413 1.60003 1.14080 1.90814 1.51323 1.55110 1.48273 1.19975 0.94224 0.91752 1.17854 1.17487 0.75577 0.85795 0.81556 1.90740 1.55097 1.68276 1.32108 1.48482 1.63739 1.15653 1.05968 1.23033 1.00775 0.98620 0.80508 1.21482 0.95649 0.93778 0.82492 0.92156 1.42493 1.55090 1.34046 1.05805 1.18979 1.20960 1.05314 0.90802 0.92493 1.25432 1.02398 1.00653 0.96371 1.69883 1.50069 1.37925 1.05383 0.85484 0.79215 0.80381 0.77149 1.20321 1.22863 1.17126 1.22477 1.00652 0.96202 0.92940 0.88800 1.21652 0.95323 0.99968 1.02008 1.22041 0.99234 0.82941 0.96492 0.91998 0.94047 0.89714 0.77901 0.86533 0.83301 0.76162 0.74905 0.91147 0.92042 0.79601 0.93413 0.90506 0.92665 0.92770 0.91621 0.90904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.10 10.35 71.24 0.74 -1.36 16 2 C -0.17 -5.01 6.36 -18.52 -0.12 -5.13 16 3 C 0.01 0.13 11.82 83.12 0.98 1.11 16 4 N -0.53 -10.79 5.90 -182.72 -1.08 -11.87 16 5 H 0.43 5.21 8.96 -92.71 -0.83 4.37 16 6 C 0.08 2.04 5.67 41.78 0.24 2.28 16 7 C -0.08 -1.46 6.01 29.11 0.18 -1.28 16 8 C 0.51 11.55 8.09 87.66 0.71 12.26 16 9 N -0.84 -10.41 8.87 -173.53 -1.54 -11.95 16 10 O -0.58 -20.03 16.88 -3.01 -0.05 -20.08 16 11 C -0.23 -7.49 4.90 -19.04 -0.09 -7.58 16 12 C 0.61 22.28 7.31 86.62 0.63 22.91 16 13 O -0.58 -25.60 17.44 -4.10 -0.07 -25.67 16 14 N -0.61 -19.76 3.32 -815.41 -2.71 -22.47 16 15 C 0.10 3.21 6.43 86.93 0.56 3.77 16 16 C 0.18 6.23 3.18 46.46 0.15 6.38 16 17 H 0.06 2.34 7.99 -2.39 -0.02 2.32 16 18 N -0.73 -30.93 5.04 -316.01 -1.59 -32.52 16 19 C -0.23 -12.20 10.44 84.03 0.88 -11.32 16 20 H 0.06 3.38 8.06 -2.91 -0.02 3.35 16 21 C -0.06 -3.16 5.50 84.86 0.47 -2.69 16 22 N -0.98 -60.44 13.97 21.65 0.30 -60.14 16 23 Si 0.95 42.34 27.74 68.60 1.90 44.24 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.25 -9.70 6.52 99.48 0.65 -9.05 16 27 C -0.10 -2.86 3.19 -9.60 -0.03 -2.89 16 28 H 0.09 2.42 8.00 -2.39 -0.02 2.40 16 29 C -0.13 -3.32 9.13 71.98 0.66 -2.66 16 30 C 0.12 3.32 6.47 86.73 0.56 3.88 16 31 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.12 2.17 8.04 -2.39 -0.02 2.15 16 36 H 0.15 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.41 4.67 8.93 -92.71 -0.83 3.84 16 38 H 0.42 1.99 8.83 -92.71 -0.82 1.17 16 39 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.06 2.25 7.61 -2.39 -0.02 2.23 16 41 H 0.37 14.76 5.62 -92.71 -0.52 14.24 16 42 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 46 H 0.07 1.90 7.82 -2.39 -0.02 1.89 16 47 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -86.08 394.24 -0.36 -86.45 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -2.02 Total: 36.35 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: 6.50 Total: 17.66 kcal Atomic # 7 Polarization: -132.33 SS G_CDS: -6.62 Total: -138.95 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.12 Total: -45.75 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.90 Total: 44.24 kcal Total: -86.08 -0.36 -86.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.101 kcal (2) G-P(sol) polarization free energy of solvation -86.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds