Wall clock time and date at job start Tue Mar 31 2020 18:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34484 * 126.83409 * 2 1 4 4 N 1.36446 * 108.86229 * 180.02562 * 3 2 1 5 5 H 0.96990 * 124.85633 * 180.02562 * 4 3 2 6 6 C 1.34665 * 110.29117 * 359.72644 * 4 3 2 7 7 C 1.50701 * 125.79724 * 180.30522 * 6 4 3 8 8 C 1.50702 * 109.46774 * 265.15891 * 7 6 4 9 9 N 1.34781 * 119.99878 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00385 * 0.02562 * 8 7 6 11 11 C 1.36766 * 108.39769 * 0.44269 * 6 4 3 12 12 C 1.47267 * 126.93847 * 179.83770 * 11 6 4 13 13 O 1.21621 * 119.99929 * 269.70436 * 12 11 6 14 14 N 1.34783 * 119.99713 * 89.71449 * 12 11 6 15 15 C 1.47423 * 125.64161 * 179.97438 * 14 12 11 16 16 C 1.54909 * 104.82838 * 204.16119 * 15 14 12 17 17 H 1.09000 * 111.00575 * 81.06575 * 16 15 14 18 18 C 1.53007 * 111.00726 * 204.91723 * 16 15 14 19 19 C 1.55158 * 101.58488 * 322.99387 * 16 15 14 20 20 H 1.08994 * 110.87663 * 153.93527 * 19 16 15 21 21 N 1.46506 * 110.71680 * 277.14099 * 19 16 15 22 22 C 1.36933 * 119.99608 * 199.97449 * 21 19 16 23 23 H 1.08001 * 120.00348 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99899 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99871 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00192 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47079 * 60.00270 * 26 24 22 28 28 H 1.48497 * 109.47492 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47685 * 300.00274 * 26 24 22 30 30 C 1.47016 * 125.65094 * 0.02562 * 14 12 11 31 31 H 1.08997 * 109.47430 * 269.96087 * 1 2 3 32 32 H 1.08999 * 109.47164 * 29.96574 * 1 2 3 33 33 H 1.09000 * 109.47015 * 149.96337 * 1 2 3 34 34 H 1.08002 * 125.56788 * 0.02562 * 3 2 1 35 35 H 1.08992 * 109.47742 * 25.16426 * 7 6 4 36 36 H 1.09004 * 109.47262 * 145.16639 * 7 6 4 37 37 H 0.97002 * 119.99773 * 0.02562 * 9 8 7 38 38 H 0.97004 * 119.99589 * 180.02562 * 9 8 7 39 39 H 1.08998 * 110.37133 * 322.99304 * 15 14 12 40 40 H 1.08995 * 110.36798 * 85.21797 * 15 14 12 41 41 H 1.08997 * 109.47136 * 172.19807 * 18 16 15 42 42 H 1.08994 * 109.46778 * 292.19704 * 18 16 15 43 43 H 1.08996 * 109.46766 * 52.19701 * 18 16 15 44 44 H 0.96992 * 120.00060 * 19.97002 * 21 19 16 45 45 H 0.97000 * 119.99781 * 179.97438 * 25 24 22 46 46 H 1.08999 * 109.88460 * 59.48378 * 30 14 12 47 47 H 1.09001 * 110.00733 * 298.39246 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3839 1.2414 -0.0003 6 6 3.6656 -0.6902 0.0051 7 6 4.9226 -1.5214 0.0128 8 6 5.2803 -1.9042 -1.4002 9 7 6.3752 -2.6530 -1.6388 10 8 4.5835 -1.5377 -2.3227 11 6 2.3864 -1.1740 -0.0005 12 6 1.9750 -2.5881 -0.0007 13 8 1.8051 -3.1718 -1.0540 14 7 1.7867 -3.2352 1.1665 15 6 1.3763 -4.6437 1.3114 16 6 0.7153 -4.7223 2.7101 17 1 -0.3157 -4.3703 2.6753 18 6 0.7885 -6.1434 3.2724 19 6 1.6064 -3.7528 3.5308 20 1 1.0533 -3.3347 4.3717 21 7 2.8186 -4.4315 3.9960 22 6 3.5286 -3.9193 5.0490 23 1 3.1952 -3.0150 5.5362 24 6 4.6768 -4.5626 5.4902 25 7 5.0834 -5.6645 4.8961 26 14 5.6458 -3.8636 6.9261 27 1 4.7783 -3.8121 8.1303 28 1 6.8209 -4.7297 7.1987 29 1 6.1089 -2.4931 6.5906 30 6 1.9554 -2.6531 2.5059 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3633 0.8903 -0.5133 33 1 -0.3633 -0.8897 -0.5144 34 1 1.9867 2.1059 0.0004 35 1 5.7372 -0.9444 0.4503 36 1 4.7583 -2.4231 0.6029 37 1 6.9328 -2.9459 -0.9010 38 1 6.6057 -2.8991 -2.5484 39 1 0.6577 -4.9112 0.5367 40 1 2.2460 -5.2990 1.2637 41 1 0.4443 -6.1431 4.3066 42 1 0.1548 -6.8021 2.6787 43 1 1.8187 -6.4972 3.2324 44 1 3.1181 -5.2435 3.5583 45 1 5.8860 -6.1138 5.2042 46 1 1.2823 -1.8046 2.6289 47 1 2.9872 -2.3307 2.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939172026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:38 Heat of formation + Delta-G solvation = -16.862551 kcal Electronic energy + Delta-G solvation = -30224.996501 eV Core-core repulsion = 26215.530214 eV Total energy + Delta-G solvation = -4009.466287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26987 -39.30944 -39.08418 -37.23893 -33.84213 -33.66411 -32.75084 -32.36537 -31.37056 -30.44592 -28.35515 -27.59364 -26.14748 -25.69664 -23.86230 -22.67064 -21.31591 -20.77533 -19.33812 -19.19116 -18.24707 -17.84870 -17.35483 -16.97652 -16.61281 -16.08815 -15.53738 -15.25553 -14.62587 -14.53265 -14.29141 -14.03453 -13.69110 -13.50839 -13.30129 -13.22008 -12.93041 -12.88605 -12.56721 -12.45044 -12.30716 -12.10120 -11.90557 -11.84913 -11.47591 -11.16825 -11.08140 -10.94379 -10.74407 -10.42744 -10.30350 -9.99185 -9.90131 -9.68329 -9.66653 -9.48738 -9.01116 -8.35134 -8.07127 -7.99225 -7.06419 -5.85613 -3.14711 2.19399 2.66856 2.72324 3.05777 3.21503 3.36057 3.41953 3.42432 3.66119 3.70782 4.50618 4.57870 4.87430 4.95902 5.03187 5.14608 5.25739 5.31472 5.40784 5.45337 5.53507 5.56201 5.60847 5.70444 5.83823 5.87508 6.02397 6.04581 6.06451 6.12971 6.27422 6.31899 6.32040 6.41408 6.45290 6.61026 6.75278 6.77616 6.84114 6.94454 6.98468 7.09936 7.27799 7.58311 7.62128 8.08008 8.27337 8.32717 8.71051 9.44490 10.00580 10.36074 11.36484 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004409 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.268977 B = 6349.085943 C = 7215.355775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.134 4.134 3 C -0.010 4.010 4 N -0.547 5.547 5 H 0.412 0.588 6 C 0.086 3.914 7 C -0.082 4.082 8 C 0.517 3.483 9 N -0.857 5.857 10 O -0.523 6.523 11 C -0.181 4.181 12 C 0.602 3.398 13 O -0.545 6.545 14 N -0.602 5.602 15 C 0.115 3.885 16 C -0.113 4.113 17 H 0.078 0.922 18 C -0.130 4.130 19 C 0.171 3.829 20 H 0.068 0.932 21 N -0.712 5.712 22 C -0.242 4.242 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 C 0.081 3.919 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.403 0.597 38 H 0.401 0.599 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.053 0.947 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.443 10.164 -7.614 12.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 C -0.139 4.139 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.030 4.030 7 C -0.123 4.123 8 C 0.301 3.699 9 N -0.422 5.422 10 O -0.397 6.397 11 C -0.191 4.191 12 C 0.390 3.610 13 O -0.423 6.423 14 N -0.335 5.335 15 C -0.008 4.008 16 C -0.133 4.133 17 H 0.096 0.904 18 C -0.188 4.188 19 C 0.059 3.941 20 H 0.086 0.914 21 N -0.353 5.353 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.214 1.214 30 C -0.045 4.045 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.184 0.816 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.231 0.769 38 H 0.231 0.769 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.222 0.778 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.908 10.391 -8.554 13.769 hybrid contribution 1.640 0.218 0.736 1.811 sum -1.268 10.609 -7.818 13.239 Atomic orbital electron populations 1.20100 0.89829 1.02083 1.01559 1.20344 0.95025 0.90430 1.08322 1.21361 0.82208 0.98798 1.11514 1.41189 1.08119 1.05684 1.59096 0.75173 1.19071 0.93913 0.83095 1.06909 1.20240 0.95006 1.01506 0.95555 1.20432 0.80279 0.77998 0.91211 1.43817 1.28996 1.56604 1.12780 1.90803 1.49658 1.53498 1.45752 1.19860 0.92239 0.92446 1.14575 1.17139 0.76713 0.84959 0.82202 1.90769 1.52101 1.68434 1.30962 1.48429 1.66889 1.12177 1.05993 1.22231 0.98912 0.82646 0.96979 1.22603 0.98888 0.97451 0.94395 0.90359 1.21539 1.02668 0.94169 1.00430 1.21228 0.88897 0.90762 0.93210 0.91389 1.42438 1.25514 1.29777 1.37600 1.19185 1.04251 1.06780 1.07050 0.91153 1.24710 0.98635 0.97549 0.99635 1.69649 1.25764 1.19228 1.43204 0.86312 0.79582 0.77909 0.82596 1.21235 1.21770 1.21393 1.23110 1.01615 0.97795 0.81956 0.91810 0.92006 0.91986 0.81584 0.87702 0.86084 0.76889 0.76858 0.91431 0.91477 0.92175 0.93718 0.91268 0.77774 0.93423 0.92877 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.35 36.00 0.37 -0.61 16 2 C -0.13 -1.98 6.36 -102.54 -0.65 -2.63 16 3 C -0.01 -0.12 11.82 -16.83 -0.20 -0.32 16 4 N -0.55 -6.48 5.90 -9.11 -0.05 -6.53 16 5 H 0.41 3.43 8.96 -40.82 -0.37 3.07 16 6 C 0.09 1.29 5.67 -81.88 -0.46 0.82 16 7 C -0.08 -1.09 6.01 -29.03 -0.17 -1.26 16 8 C 0.52 7.47 8.09 -10.98 -0.09 7.38 16 9 N -0.86 -8.80 8.87 31.22 0.28 -8.52 16 10 O -0.52 -9.95 16.87 5.56 0.09 -9.85 16 11 C -0.18 -3.13 5.22 -103.35 -0.54 -3.67 16 12 C 0.60 11.79 7.33 -12.59 -0.09 11.70 16 13 O -0.54 -12.59 17.36 5.26 0.09 -12.50 16 14 N -0.60 -10.85 3.33 -171.85 -0.57 -11.42 16 15 C 0.11 1.98 6.35 -2.53 -0.02 1.97 16 16 C -0.11 -1.80 3.51 -88.47 -0.31 -2.11 16 17 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 18 C -0.13 -2.05 8.85 37.16 0.33 -1.72 16 19 C 0.17 3.12 3.37 -66.09 -0.22 2.90 16 20 H 0.07 1.23 8.12 -51.93 -0.42 0.80 16 21 N -0.71 -16.02 4.61 -51.65 -0.24 -16.26 16 22 C -0.24 -6.09 9.98 -15.06 -0.15 -6.24 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.12 13.06 55.49 0.72 -25.40 16 26 Si 0.90 20.95 29.55 -169.99 -5.02 15.93 16 27 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 30 C 0.08 1.42 6.21 -3.07 -0.02 1.41 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.12 1.76 8.05 -51.93 -0.42 1.34 16 37 H 0.40 3.07 8.83 -40.82 -0.36 2.71 16 38 H 0.40 3.68 8.93 -40.82 -0.36 3.32 16 39 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 40 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.25 6.38 -51.93 -0.33 0.92 16 44 H 0.39 9.36 6.10 -40.82 -0.25 9.11 16 45 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.40 8.04 -51.93 -0.42 0.99 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -35.81 394.27 -8.19 -44.00 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -7.11 Total: 17.34 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.32 Total: 7.27 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 0.14 Total: -68.13 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.19 Total: -22.35 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.81 -8.19 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.139 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds