Wall clock time and date at job start Tue Mar 31 2020 18:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34484 * 126.83409 * 2 1 4 4 N 1.36446 * 108.86229 * 180.02562 * 3 2 1 5 5 H 0.96990 * 124.85633 * 180.02562 * 4 3 2 6 6 C 1.34665 * 110.29117 * 359.72644 * 4 3 2 7 7 C 1.50701 * 125.79724 * 180.30522 * 6 4 3 8 8 C 1.50702 * 109.46774 * 265.15891 * 7 6 4 9 9 N 1.34781 * 119.99878 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00385 * 0.02562 * 8 7 6 11 11 C 1.36766 * 108.39769 * 0.44269 * 6 4 3 12 12 C 1.47267 * 126.93847 * 179.83770 * 11 6 4 13 13 O 1.21621 * 119.99929 * 269.70436 * 12 11 6 14 14 N 1.34783 * 119.99713 * 89.71449 * 12 11 6 15 15 C 1.47423 * 125.64161 * 179.97438 * 14 12 11 16 16 C 1.54909 * 104.82838 * 204.16119 * 15 14 12 17 17 H 1.09000 * 111.00575 * 81.06575 * 16 15 14 18 18 C 1.53007 * 111.00726 * 204.91723 * 16 15 14 19 19 C 1.55158 * 101.58488 * 322.99387 * 16 15 14 20 20 H 1.08994 * 110.87663 * 153.93527 * 19 16 15 21 21 N 1.46506 * 110.71680 * 277.14099 * 19 16 15 22 22 C 1.36933 * 119.99608 * 199.97449 * 21 19 16 23 23 H 1.08001 * 120.00348 * 359.97438 * 22 21 19 24 24 C 1.38815 * 119.99899 * 179.97438 * 22 21 19 25 25 N 1.31624 * 119.99871 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00192 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47079 * 60.00270 * 26 24 22 28 28 H 1.48497 * 109.47492 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47685 * 300.00274 * 26 24 22 30 30 C 1.47016 * 125.65094 * 0.02562 * 14 12 11 31 31 H 1.08997 * 109.47430 * 269.96087 * 1 2 3 32 32 H 1.08999 * 109.47164 * 29.96574 * 1 2 3 33 33 H 1.09000 * 109.47015 * 149.96337 * 1 2 3 34 34 H 1.08002 * 125.56788 * 0.02562 * 3 2 1 35 35 H 1.08992 * 109.47742 * 25.16426 * 7 6 4 36 36 H 1.09004 * 109.47262 * 145.16639 * 7 6 4 37 37 H 0.97002 * 119.99773 * 0.02562 * 9 8 7 38 38 H 0.97004 * 119.99589 * 180.02562 * 9 8 7 39 39 H 1.08998 * 110.37133 * 322.99304 * 15 14 12 40 40 H 1.08995 * 110.36798 * 85.21797 * 15 14 12 41 41 H 1.08997 * 109.47136 * 172.19807 * 18 16 15 42 42 H 1.08994 * 109.46778 * 292.19704 * 18 16 15 43 43 H 1.08996 * 109.46766 * 52.19701 * 18 16 15 44 44 H 0.96992 * 120.00060 * 19.97002 * 21 19 16 45 45 H 0.97000 * 119.99781 * 179.97438 * 25 24 22 46 46 H 1.08999 * 109.88460 * 59.48378 * 30 14 12 47 47 H 1.09001 * 110.00733 * 298.39246 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0006 5 1 4.3839 1.2414 -0.0003 6 6 3.6656 -0.6902 0.0051 7 6 4.9226 -1.5214 0.0128 8 6 5.2803 -1.9042 -1.4002 9 7 6.3752 -2.6530 -1.6388 10 8 4.5835 -1.5377 -2.3227 11 6 2.3864 -1.1740 -0.0005 12 6 1.9750 -2.5881 -0.0007 13 8 1.8051 -3.1718 -1.0540 14 7 1.7867 -3.2352 1.1665 15 6 1.3763 -4.6437 1.3114 16 6 0.7153 -4.7223 2.7101 17 1 -0.3157 -4.3703 2.6753 18 6 0.7885 -6.1434 3.2724 19 6 1.6064 -3.7528 3.5308 20 1 1.0533 -3.3347 4.3717 21 7 2.8186 -4.4315 3.9960 22 6 3.5286 -3.9193 5.0490 23 1 3.1952 -3.0150 5.5362 24 6 4.6768 -4.5626 5.4902 25 7 5.0834 -5.6645 4.8961 26 14 5.6458 -3.8636 6.9261 27 1 4.7783 -3.8121 8.1303 28 1 6.8209 -4.7297 7.1987 29 1 6.1089 -2.4931 6.5906 30 6 1.9554 -2.6531 2.5059 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3633 0.8903 -0.5133 33 1 -0.3633 -0.8897 -0.5144 34 1 1.9867 2.1059 0.0004 35 1 5.7372 -0.9444 0.4503 36 1 4.7583 -2.4231 0.6029 37 1 6.9328 -2.9459 -0.9010 38 1 6.6057 -2.8991 -2.5484 39 1 0.6577 -4.9112 0.5367 40 1 2.2460 -5.2990 1.2637 41 1 0.4443 -6.1431 4.3066 42 1 0.1548 -6.8021 2.6787 43 1 1.8187 -6.4972 3.2324 44 1 3.1181 -5.2435 3.5583 45 1 5.8860 -6.1138 5.2042 46 1 1.2823 -1.8046 2.6289 47 1 2.9872 -2.3307 2.6452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939172026.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:38 Heat of formation + Delta-G solvation = -44.304388 kcal Electronic energy + Delta-G solvation = -30226.186468 eV Core-core repulsion = 26215.530214 eV Total energy + Delta-G solvation = -4010.656254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.34632 -40.74955 -40.23317 -38.79103 -35.62152 -34.75578 -33.95465 -33.68958 -32.55029 -32.10574 -29.51585 -29.18565 -27.39487 -26.75353 -25.72213 -24.07675 -22.58589 -21.93499 -20.67630 -20.33947 -19.64559 -19.20965 -18.81717 -18.05863 -17.66616 -17.49902 -17.06811 -16.52952 -16.28412 -15.86991 -15.67293 -15.35065 -15.26045 -14.63042 -14.57331 -14.42986 -14.36731 -14.18927 -13.81789 -13.53406 -13.48261 -13.38011 -13.29537 -13.05856 -13.00806 -12.81511 -12.72558 -12.31013 -12.18741 -12.14122 -11.96644 -11.42096 -11.35430 -11.20372 -11.05235 -10.86479 -10.71818 -9.59232 -9.44540 -9.02078 -8.95031 -7.86041 -5.13949 1.09954 1.53511 1.54314 1.55108 1.60322 1.60733 1.67092 2.11142 2.45430 2.62190 2.69472 3.45104 3.51541 3.57034 3.92590 3.96125 3.96396 4.06610 4.11753 4.13482 4.26238 4.37766 4.45291 4.54374 4.61835 4.68376 4.70448 4.75126 4.90778 4.93210 5.01079 5.02905 5.04905 5.15229 5.24901 5.30229 5.34465 5.40651 5.57908 5.63827 5.83235 5.87345 6.04237 6.34699 6.34883 6.60942 6.73512 7.22184 7.26963 7.42815 8.16038 8.41045 9.36807 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.009709 B = 0.004409 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.268977 B = 6349.085943 C = 7215.355775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.166 4.166 3 C 0.011 3.989 4 N -0.533 5.533 5 H 0.431 0.569 6 C 0.077 3.923 7 C -0.081 4.081 8 C 0.514 3.486 9 N -0.837 5.837 10 O -0.575 6.575 11 C -0.224 4.224 12 C 0.602 3.398 13 O -0.592 6.592 14 N -0.599 5.599 15 C 0.113 3.887 16 C -0.098 4.098 17 H 0.107 0.893 18 C -0.123 4.123 19 C 0.165 3.835 20 H 0.080 0.920 21 N -0.719 5.719 22 C -0.233 4.233 23 H 0.079 0.921 24 C -0.068 4.068 25 N -0.967 5.967 26 Si 0.964 3.036 27 H -0.282 1.282 28 H -0.303 1.303 29 H -0.278 1.278 30 C 0.096 3.904 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.034 0.966 34 H 0.211 0.789 35 H 0.145 0.855 36 H 0.102 0.898 37 H 0.417 0.583 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.039 0.961 44 H 0.376 0.624 45 H 0.248 0.752 46 H 0.073 0.927 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.836 12.707 -6.658 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.172 4.172 3 C -0.119 4.119 4 N -0.128 5.128 5 H 0.270 0.730 6 C -0.040 4.040 7 C -0.121 4.121 8 C 0.299 3.701 9 N -0.402 5.402 10 O -0.454 6.454 11 C -0.235 4.235 12 C 0.392 3.608 13 O -0.474 6.474 14 N -0.330 5.330 15 C -0.010 4.010 16 C -0.117 4.117 17 H 0.125 0.875 18 C -0.181 4.181 19 C 0.055 3.945 20 H 0.098 0.902 21 N -0.360 5.360 22 C -0.365 4.365 23 H 0.097 0.903 24 C -0.260 4.260 25 N -0.618 5.618 26 Si 0.794 3.206 27 H -0.208 1.208 28 H -0.229 1.229 29 H -0.204 1.204 30 C -0.029 4.029 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.054 0.946 34 H 0.228 0.772 35 H 0.162 0.838 36 H 0.120 0.880 37 H 0.249 0.751 38 H 0.239 0.761 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.210 0.790 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.283 12.965 -7.557 15.362 hybrid contribution 1.740 -0.561 0.399 1.871 sum -1.543 12.404 -7.158 14.404 Atomic orbital electron populations 1.20091 0.88817 1.01996 1.02160 1.20708 0.96140 0.90283 1.10084 1.21999 0.81510 0.99996 1.08359 1.41223 1.09146 1.04790 1.57640 0.72982 1.19220 0.93668 0.84547 1.06575 1.20266 0.95967 1.01211 0.94659 1.20683 0.80442 0.77864 0.91160 1.43668 1.27794 1.54858 1.13881 1.90777 1.51540 1.55863 1.47173 1.19969 0.94208 0.91730 1.17567 1.17598 0.75623 0.85997 0.81630 1.90723 1.54341 1.69793 1.32528 1.48489 1.66224 1.12295 1.06034 1.22253 0.98372 0.82233 0.98133 1.22566 0.99590 0.97112 0.92466 0.87520 1.21462 1.01346 0.94440 1.00881 1.21441 0.87853 0.91333 0.93922 0.90193 1.42558 1.26646 1.29640 1.37118 1.19557 1.03801 1.06322 1.06776 0.90286 1.25391 1.00104 0.98243 1.02279 1.69808 1.26154 1.20846 1.44960 0.85354 0.77894 0.77285 0.80028 1.20789 1.22929 1.20432 1.22897 1.00905 0.97889 0.81252 0.90809 0.89478 0.94644 0.77237 0.83763 0.87958 0.75141 0.76050 0.91128 0.93409 0.92198 0.91215 0.94161 0.79042 0.94283 0.90857 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.73 10.35 71.23 0.74 -1.00 16 2 C -0.17 -4.63 6.36 -18.52 -0.12 -4.75 16 3 C 0.01 0.22 11.82 83.12 0.98 1.20 16 4 N -0.53 -11.28 5.90 -182.72 -1.08 -12.35 16 5 H 0.43 5.77 8.96 -92.72 -0.83 4.94 16 6 C 0.08 2.24 5.67 41.78 0.24 2.48 16 7 C -0.08 -2.08 6.01 29.10 0.17 -1.90 16 8 C 0.51 14.84 8.09 87.66 0.71 15.55 16 9 N -0.84 -16.71 8.87 -173.53 -1.54 -18.25 16 10 O -0.57 -22.31 16.87 -3.04 -0.05 -22.36 16 11 C -0.22 -7.74 5.22 -19.04 -0.10 -7.84 16 12 C 0.60 24.22 7.33 86.62 0.63 24.85 16 13 O -0.59 -28.65 17.36 -4.10 -0.07 -28.72 16 14 N -0.60 -21.83 3.33 -815.86 -2.71 -24.54 16 15 C 0.11 3.94 6.35 86.86 0.55 4.49 16 16 C -0.10 -2.98 3.51 -9.40 -0.03 -3.02 16 17 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 18 C -0.12 -3.78 8.85 71.98 0.64 -3.15 16 19 C 0.16 5.84 3.37 46.18 0.16 5.99 16 20 H 0.08 2.69 8.12 -2.39 -0.02 2.68 16 21 N -0.72 -32.39 4.61 -317.32 -1.46 -33.85 16 22 C -0.23 -11.61 9.98 84.03 0.84 -10.77 16 23 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 25 N -0.97 -55.32 13.06 21.65 0.28 -55.04 16 26 Si 0.96 42.90 29.55 68.60 2.03 44.93 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 28 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 29 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 30 C 0.10 3.29 6.21 86.73 0.54 3.83 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 35 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.10 3.04 8.05 -2.39 -0.02 3.02 16 37 H 0.42 5.91 8.83 -92.71 -0.82 5.09 16 38 H 0.41 7.29 8.93 -92.71 -0.83 6.46 16 39 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 40 H 0.05 1.85 7.99 -2.39 -0.02 1.83 16 41 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.47 6.38 -2.39 -0.02 1.46 16 44 H 0.38 18.63 6.10 -92.71 -0.57 18.06 16 45 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 2.04 8.04 -2.39 -0.02 2.03 16 Total: -1.00 -80.71 394.27 -0.20 -80.91 By element: Atomic # 1 Polarization: 48.42 SS G_CDS: -2.01 Total: 46.41 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 6.41 Total: 22.86 kcal Atomic # 7 Polarization: -137.51 SS G_CDS: -6.51 Total: -144.03 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.12 Total: -51.08 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -80.71 -0.20 -80.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172026.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.604 kcal (2) G-P(sol) polarization free energy of solvation -80.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds