Wall clock time and date at job start Tue Mar 31 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34483 * 126.83677 * 2 1 4 4 N 1.36447 * 108.85936 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.84928 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29687 * 0.27372 * 4 3 2 7 7 C 1.50692 * 125.80189 * 179.73658 * 6 4 3 8 8 C 1.50709 * 109.47154 * 265.01996 * 7 6 4 9 9 N 1.34769 * 120.00102 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99605 * 0.02562 * 8 7 6 11 11 C 1.36772 * 108.39589 * 359.56148 * 6 4 3 12 12 C 1.47261 * 126.94219 * 180.16560 * 11 6 4 13 13 O 1.21626 * 120.00012 * 270.27862 * 12 11 6 14 14 N 1.34775 * 120.00275 * 90.28298 * 12 11 6 15 15 C 1.47417 * 125.65004 * 180.02562 * 14 12 11 16 16 C 1.54911 * 104.83325 * 204.08775 * 15 14 12 17 17 H 1.08997 * 111.00498 * 81.06413 * 16 15 14 18 18 C 1.52999 * 111.00558 * 204.87538 * 16 15 14 19 19 C 1.55157 * 101.58135 * 322.98898 * 16 15 14 20 20 H 1.09002 * 110.71845 * 276.96253 * 19 16 15 21 21 N 1.46498 * 110.72197 * 153.86406 * 19 16 15 22 22 C 1.36932 * 119.99878 * 155.00044 * 21 19 16 23 23 H 1.08006 * 120.00342 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00096 * 180.02562 * 22 21 19 25 25 N 1.31614 * 119.99765 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00297 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47060 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.46876 * 119.99469 * 26 24 22 29 29 H 1.48496 * 109.47237 * 239.99866 * 26 24 22 30 30 C 1.47019 * 125.64655 * 359.68453 * 14 12 11 31 31 H 1.08990 * 109.47421 * 89.96830 * 1 2 3 32 32 H 1.09004 * 109.47347 * 209.97522 * 1 2 3 33 33 H 1.09007 * 109.46773 * 329.96558 * 1 2 3 34 34 H 1.08007 * 125.56915 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.47257 * 25.01535 * 7 6 4 36 36 H 1.08997 * 109.47617 * 145.02361 * 7 6 4 37 37 H 0.96998 * 120.00200 * 359.97438 * 9 8 7 38 38 H 0.97006 * 119.99974 * 180.02562 * 9 8 7 39 39 H 1.09003 * 110.36564 * 322.92517 * 15 14 12 40 40 H 1.09004 * 110.37374 * 85.13748 * 15 14 12 41 41 H 1.09007 * 109.46974 * 58.54391 * 18 16 15 42 42 H 1.08998 * 109.47437 * 178.54269 * 18 16 15 43 43 H 1.09000 * 109.47189 * 298.54566 * 18 16 15 44 44 H 0.96998 * 119.99937 * 335.00139 * 21 19 16 45 45 H 0.96997 * 120.00602 * 180.02562 * 25 24 22 46 46 H 1.09002 * 109.88877 * 298.39960 * 30 14 12 47 47 H 1.09002 * 109.88209 * 59.56582 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0011 6 6 3.6656 -0.6903 -0.0070 7 6 4.9225 -1.5216 -0.0152 8 6 5.2685 -1.8950 -1.4337 9 7 6.3607 -2.6431 -1.6863 10 8 4.5640 -1.5223 -2.3479 11 6 2.3864 -1.1741 -0.0008 12 6 1.9749 -2.5881 -0.0011 13 8 1.8041 -3.1715 -1.0545 14 7 1.7875 -3.2356 1.1659 15 6 1.3782 -4.6444 1.3107 16 6 0.7195 -4.7242 2.7105 17 1 -0.3118 -4.3728 2.6776 18 6 0.7936 -6.1458 3.2714 19 6 1.6115 -3.7548 3.5302 20 1 2.5127 -4.2603 3.8772 21 7 0.8661 -3.1946 4.6601 22 6 1.5352 -2.7520 5.7698 23 1 2.6125 -2.8162 5.8123 24 6 0.8288 -2.2216 6.8407 25 7 -0.4840 -2.1437 6.7892 26 14 1.7415 -1.6185 8.3548 27 1 3.2010 -1.8159 8.1644 28 1 1.4595 -0.1750 8.5605 29 1 1.2897 -2.3854 9.5434 30 6 1.9642 -2.6560 2.5054 31 1 -0.3634 0.0006 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5144 34 1 1.9868 2.1059 -0.0004 35 1 5.7408 -0.9473 0.4192 36 1 4.7631 -2.4271 0.5702 37 1 6.9243 -2.9409 -0.9551 38 1 6.5836 -2.8832 -2.5993 39 1 0.6584 -4.9118 0.5370 40 1 2.2481 -5.2994 1.2612 41 1 1.8362 -6.4576 3.3343 42 1 0.3471 -6.1679 4.2655 43 1 0.2504 -6.8245 2.6139 44 1 -0.1015 -3.1372 4.6222 45 1 -0.9776 -1.7728 7.5372 46 1 2.9987 -2.3398 2.6391 47 1 1.2949 -1.8050 2.6324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939172028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:42 Heat of formation + Delta-G solvation = -19.750321 kcal Electronic energy + Delta-G solvation = -29836.953168 eV Core-core repulsion = 25827.361658 eV Total energy + Delta-G solvation = -4009.591510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31055 -39.36399 -39.20311 -37.22012 -33.98477 -33.85512 -32.76826 -32.46237 -31.44949 -30.66456 -28.39589 -27.41141 -26.21305 -25.74400 -23.97109 -22.43508 -21.27374 -20.74491 -19.88646 -19.34930 -18.31142 -17.89117 -17.15563 -17.12196 -16.75145 -16.20777 -15.72894 -15.41094 -14.76874 -14.55155 -14.34747 -13.85656 -13.66632 -13.50068 -13.36977 -13.25167 -12.96938 -12.90583 -12.55927 -12.54193 -12.45196 -12.19886 -12.07246 -11.95111 -11.45628 -11.14167 -11.09845 -11.00349 -10.71353 -10.57213 -10.21872 -10.15200 -9.95812 -9.87034 -9.77056 -9.55353 -8.99101 -8.35507 -8.17133 -8.01290 -7.06885 -5.84122 -3.14239 2.12942 2.49855 2.73586 2.97690 3.13733 3.37982 3.43354 3.46121 3.49954 3.61609 4.43391 4.52371 4.75330 4.85245 4.90176 5.14154 5.19723 5.22677 5.27989 5.33893 5.54401 5.59947 5.62566 5.70463 5.85896 5.89724 5.95970 5.99089 6.01706 6.08532 6.22769 6.25475 6.30565 6.35757 6.47539 6.56995 6.59263 6.63760 6.73786 6.91120 6.97062 7.06509 7.10768 7.56042 7.63498 7.97296 8.10269 8.33252 8.61664 9.45331 10.00341 10.35346 11.37987 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003698 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.210474 B = 7569.301252 C = 8156.767597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.128 4.128 3 C -0.008 4.008 4 N -0.546 5.546 5 H 0.412 0.588 6 C 0.076 3.924 7 C -0.078 4.078 8 C 0.514 3.486 9 N -0.859 5.859 10 O -0.517 6.517 11 C -0.180 4.180 12 C 0.603 3.397 13 O -0.544 6.544 14 N -0.609 5.609 15 C 0.113 3.887 16 C -0.114 4.114 17 H 0.083 0.917 18 C -0.132 4.132 19 C 0.177 3.823 20 H 0.066 0.934 21 N -0.710 5.710 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C 0.081 3.919 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.168 0.832 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.400 0.600 38 H 0.401 0.599 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.387 0.613 45 H 0.256 0.744 46 H 0.053 0.947 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 1.227 -12.778 17.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.135 4.135 3 C -0.136 4.136 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.039 4.039 7 C -0.119 4.119 8 C 0.298 3.702 9 N -0.424 5.424 10 O -0.391 6.391 11 C -0.191 4.191 12 C 0.391 3.609 13 O -0.422 6.422 14 N -0.342 5.342 15 C -0.010 4.010 16 C -0.135 4.135 17 H 0.101 0.899 18 C -0.189 4.189 19 C 0.065 3.935 20 H 0.084 0.916 21 N -0.350 5.350 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.218 1.218 30 C -0.045 4.045 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.186 0.814 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.228 0.772 38 H 0.232 0.768 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.221 0.779 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.502 1.448 -13.694 17.942 hybrid contribution 0.970 0.574 0.946 1.472 sum 12.472 2.023 -12.748 17.948 Atomic orbital electron populations 1.20126 0.89638 1.02469 1.01541 1.20382 0.95186 0.90330 1.07559 1.21401 0.82084 0.98950 1.11181 1.41160 1.08155 1.05572 1.59165 0.75202 1.18979 0.93695 0.83256 1.07986 1.20183 0.95201 1.01140 0.95358 1.20465 0.80350 0.78088 0.91311 1.43819 1.29023 1.56860 1.12705 1.90826 1.48970 1.52780 1.46487 1.19855 0.92296 0.92447 1.14472 1.17179 0.76616 0.84973 0.82169 1.90770 1.52008 1.68426 1.30948 1.48534 1.67096 1.12322 1.06256 1.22234 0.98764 0.82436 0.97539 1.22648 1.00418 0.96895 0.93491 0.89884 1.21591 1.01459 0.94528 1.01366 1.21258 0.94581 0.90557 0.87141 0.91588 1.42351 1.06088 1.72922 1.13649 1.19273 0.91366 1.33528 0.93404 0.91038 1.24739 0.95475 1.01714 0.98538 1.69663 1.05006 1.50962 1.31969 0.86156 0.78708 0.78220 0.83285 1.20553 1.21858 1.21835 1.23212 1.00655 0.99696 0.80933 0.91914 0.91821 0.91667 0.81434 0.87723 0.86704 0.77165 0.76778 0.91082 0.91930 0.92910 0.91476 0.93269 0.77879 0.93436 0.92839 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.35 36.01 0.37 -0.78 16 2 C -0.13 -1.99 6.36 -102.54 -0.65 -2.64 16 3 C -0.01 -0.10 11.82 -16.83 -0.20 -0.30 16 4 N -0.55 -6.28 5.90 -9.11 -0.05 -6.33 16 5 H 0.41 3.20 8.96 -40.82 -0.37 2.83 16 6 C 0.08 1.06 5.67 -81.89 -0.46 0.60 16 7 C -0.08 -0.82 6.01 -29.03 -0.17 -0.99 16 8 C 0.51 6.23 8.09 -10.98 -0.09 6.14 16 9 N -0.86 -6.40 8.87 31.22 0.28 -6.12 16 10 O -0.52 -9.00 16.87 5.56 0.09 -8.91 16 11 C -0.18 -3.05 5.22 -103.35 -0.54 -3.59 16 12 C 0.60 11.29 7.33 -12.59 -0.09 11.20 16 13 O -0.54 -11.97 17.36 5.25 0.09 -11.87 16 14 N -0.61 -10.41 3.33 -171.84 -0.57 -10.98 16 15 C 0.11 1.76 6.37 -2.53 -0.02 1.75 16 16 C -0.11 -1.83 3.27 -88.47 -0.29 -2.12 16 17 H 0.08 1.42 8.01 -51.93 -0.42 1.01 16 18 C -0.13 -1.86 9.30 37.16 0.35 -1.51 16 19 C 0.18 3.27 3.08 -66.09 -0.20 3.07 16 20 H 0.07 1.21 7.96 -51.93 -0.41 0.80 16 21 N -0.71 -16.51 5.15 -51.64 -0.27 -16.78 16 22 C -0.24 -6.33 9.96 -15.06 -0.15 -6.48 16 23 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -26.82 13.06 55.49 0.72 -26.10 16 26 Si 0.91 21.36 29.55 -169.99 -5.02 16.33 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 C 0.08 1.43 6.23 -3.06 -0.02 1.41 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.18 8.04 -51.93 -0.42 0.76 16 37 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 38 H 0.40 2.72 8.93 -40.82 -0.36 2.35 16 39 H 0.07 1.13 8.04 -51.93 -0.42 0.71 16 40 H 0.06 0.89 8.04 -51.93 -0.42 0.47 16 41 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.39 9.73 7.76 -40.82 -0.32 9.41 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -36.98 397.87 -8.25 -45.24 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.26 Total: 14.11 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.27 Total: 5.42 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.11 Total: -66.31 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.18 Total: -20.78 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.98 -8.25 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.488 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds