Wall clock time and date at job start Tue Mar 31 2020 18:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34483 * 126.83677 * 2 1 4 4 N 1.36447 * 108.85936 * 180.02562 * 3 2 1 5 5 H 0.97001 * 124.84928 * 179.97438 * 4 3 2 6 6 C 1.34659 * 110.29687 * 0.27372 * 4 3 2 7 7 C 1.50692 * 125.80189 * 179.73658 * 6 4 3 8 8 C 1.50709 * 109.47154 * 265.01996 * 7 6 4 9 9 N 1.34769 * 120.00102 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99605 * 0.02562 * 8 7 6 11 11 C 1.36772 * 108.39589 * 359.56148 * 6 4 3 12 12 C 1.47261 * 126.94219 * 180.16560 * 11 6 4 13 13 O 1.21626 * 120.00012 * 270.27862 * 12 11 6 14 14 N 1.34775 * 120.00275 * 90.28298 * 12 11 6 15 15 C 1.47417 * 125.65004 * 180.02562 * 14 12 11 16 16 C 1.54911 * 104.83325 * 204.08775 * 15 14 12 17 17 H 1.08997 * 111.00498 * 81.06413 * 16 15 14 18 18 C 1.52999 * 111.00558 * 204.87538 * 16 15 14 19 19 C 1.55157 * 101.58135 * 322.98898 * 16 15 14 20 20 H 1.09002 * 110.71845 * 276.96253 * 19 16 15 21 21 N 1.46498 * 110.72197 * 153.86406 * 19 16 15 22 22 C 1.36932 * 119.99878 * 155.00044 * 21 19 16 23 23 H 1.08006 * 120.00342 * 359.97438 * 22 21 19 24 24 C 1.38816 * 120.00096 * 180.02562 * 22 21 19 25 25 N 1.31614 * 119.99765 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00297 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47060 * 359.97438 * 26 24 22 28 28 H 1.48506 * 109.46876 * 119.99469 * 26 24 22 29 29 H 1.48496 * 109.47237 * 239.99866 * 26 24 22 30 30 C 1.47019 * 125.64655 * 359.68453 * 14 12 11 31 31 H 1.08990 * 109.47421 * 89.96830 * 1 2 3 32 32 H 1.09004 * 109.47347 * 209.97522 * 1 2 3 33 33 H 1.09007 * 109.46773 * 329.96558 * 1 2 3 34 34 H 1.08007 * 125.56915 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.47257 * 25.01535 * 7 6 4 36 36 H 1.08997 * 109.47617 * 145.02361 * 7 6 4 37 37 H 0.96998 * 120.00200 * 359.97438 * 9 8 7 38 38 H 0.97006 * 119.99974 * 180.02562 * 9 8 7 39 39 H 1.09003 * 110.36564 * 322.92517 * 15 14 12 40 40 H 1.09004 * 110.37374 * 85.13748 * 15 14 12 41 41 H 1.09007 * 109.46974 * 58.54391 * 18 16 15 42 42 H 1.08998 * 109.47437 * 178.54269 * 18 16 15 43 43 H 1.09000 * 109.47189 * 298.54566 * 18 16 15 44 44 H 0.96998 * 119.99937 * 335.00139 * 21 19 16 45 45 H 0.96997 * 120.00602 * 180.02562 * 25 24 22 46 46 H 1.09002 * 109.88877 * 298.39960 * 30 14 12 47 47 H 1.09002 * 109.88209 * 59.56582 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6552 -0.0006 5 1 4.3840 1.2413 -0.0011 6 6 3.6656 -0.6903 -0.0070 7 6 4.9225 -1.5216 -0.0152 8 6 5.2685 -1.8950 -1.4337 9 7 6.3607 -2.6431 -1.6863 10 8 4.5640 -1.5223 -2.3479 11 6 2.3864 -1.1741 -0.0008 12 6 1.9749 -2.5881 -0.0011 13 8 1.8041 -3.1715 -1.0545 14 7 1.7875 -3.2356 1.1659 15 6 1.3782 -4.6444 1.3107 16 6 0.7195 -4.7242 2.7105 17 1 -0.3118 -4.3728 2.6776 18 6 0.7936 -6.1458 3.2714 19 6 1.6115 -3.7548 3.5302 20 1 2.5127 -4.2603 3.8772 21 7 0.8661 -3.1946 4.6601 22 6 1.5352 -2.7520 5.7698 23 1 2.6125 -2.8162 5.8123 24 6 0.8288 -2.2216 6.8407 25 7 -0.4840 -2.1437 6.7892 26 14 1.7415 -1.6185 8.3548 27 1 3.2010 -1.8159 8.1644 28 1 1.4595 -0.1750 8.5605 29 1 1.2897 -2.3854 9.5434 30 6 1.9642 -2.6560 2.5054 31 1 -0.3634 0.0006 -1.0276 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5144 34 1 1.9868 2.1059 -0.0004 35 1 5.7408 -0.9473 0.4192 36 1 4.7631 -2.4271 0.5702 37 1 6.9243 -2.9409 -0.9551 38 1 6.5836 -2.8832 -2.5993 39 1 0.6584 -4.9118 0.5370 40 1 2.2481 -5.2994 1.2612 41 1 1.8362 -6.4576 3.3343 42 1 0.3471 -6.1679 4.2655 43 1 0.2504 -6.8245 2.6139 44 1 -0.1015 -3.1372 4.6222 45 1 -0.9776 -1.7728 7.5372 46 1 2.9987 -2.3398 2.6391 47 1 1.2949 -1.8050 2.6324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939172028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:41 Heat of formation + Delta-G solvation = -48.725230 kcal Electronic energy + Delta-G solvation = -29838.209614 eV Core-core repulsion = 25827.361658 eV Total energy + Delta-G solvation = -4010.847957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.35187 -40.71902 -40.19321 -38.72740 -35.79024 -34.72079 -33.98275 -33.70427 -32.63293 -32.27655 -29.49596 -29.04263 -27.41665 -26.78093 -25.81927 -23.77878 -22.41787 -21.88763 -21.33975 -20.36896 -19.54596 -19.05462 -18.86548 -18.04293 -17.65215 -17.51829 -17.16643 -16.58286 -16.29331 -15.86076 -15.43380 -15.33090 -15.27564 -14.65947 -14.59983 -14.48938 -14.21939 -14.15585 -14.03832 -13.59486 -13.57204 -13.45246 -13.35474 -13.06282 -12.96415 -12.84534 -12.80339 -12.21352 -12.18188 -12.08554 -11.98701 -11.64946 -11.41868 -11.15523 -11.05565 -10.88426 -10.66331 -9.61604 -9.45812 -9.04369 -9.00483 -7.89156 -5.18711 1.09864 1.52578 1.53170 1.57037 1.61510 1.62477 1.63227 2.07975 2.42771 2.61451 2.73197 3.42479 3.50044 3.56078 3.85383 3.95142 3.98158 4.08787 4.16983 4.24077 4.26941 4.36734 4.41536 4.48660 4.53517 4.61668 4.66713 4.73185 4.82324 4.90134 4.95930 4.99606 5.08568 5.15983 5.18834 5.26860 5.35105 5.36614 5.53119 5.60191 5.83817 5.88570 6.02278 6.30858 6.43450 6.54828 6.73305 7.19786 7.34831 7.38595 8.10336 8.34668 9.34252 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.003698 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.210474 B = 7569.301252 C = 8156.767597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.170 4.170 3 C 0.007 3.993 4 N -0.531 5.531 5 H 0.432 0.568 6 C 0.081 3.919 7 C -0.078 4.078 8 C 0.512 3.488 9 N -0.836 5.836 10 O -0.580 6.580 11 C -0.229 4.229 12 C 0.605 3.395 13 O -0.586 6.586 14 N -0.604 5.604 15 C 0.114 3.886 16 C -0.105 4.105 17 H 0.065 0.935 18 C -0.125 4.125 19 C 0.174 3.826 20 H 0.078 0.922 21 N -0.721 5.721 22 C -0.236 4.236 23 H 0.083 0.917 24 C -0.070 4.070 25 N -0.969 5.969 26 Si 0.967 3.033 27 H -0.261 1.261 28 H -0.298 1.298 29 H -0.298 1.298 30 C 0.099 3.901 31 H 0.061 0.939 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.204 0.796 35 H 0.152 0.848 36 H 0.119 0.881 37 H 0.420 0.580 38 H 0.407 0.593 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.249 0.751 46 H 0.068 0.932 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.138 1.505 -12.492 19.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.176 4.176 3 C -0.123 4.123 4 N -0.127 5.127 5 H 0.272 0.728 6 C -0.036 4.036 7 C -0.119 4.119 8 C 0.296 3.704 9 N -0.401 5.401 10 O -0.458 6.458 11 C -0.240 4.240 12 C 0.395 3.605 13 O -0.467 6.467 14 N -0.337 5.337 15 C -0.008 4.008 16 C -0.125 4.125 17 H 0.083 0.917 18 C -0.183 4.183 19 C 0.064 3.936 20 H 0.096 0.904 21 N -0.359 5.359 22 C -0.367 4.367 23 H 0.101 0.899 24 C -0.263 4.263 25 N -0.619 5.619 26 Si 0.797 3.203 27 H -0.185 1.185 28 H -0.226 1.226 29 H -0.225 1.225 30 C -0.027 4.027 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.221 0.779 35 H 0.169 0.831 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.238 0.762 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.206 0.794 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 14.782 1.693 -13.398 20.022 hybrid contribution 0.044 0.450 0.775 0.898 sum 14.826 2.144 -12.622 19.589 Atomic orbital electron populations 1.20062 0.89834 1.02001 1.01352 1.20677 0.95729 0.91196 1.10044 1.21891 0.81982 0.99756 1.08630 1.41202 1.08733 1.05173 1.57571 0.72792 1.19375 0.93912 0.84345 1.05971 1.20341 0.95288 1.01546 0.94688 1.20744 0.80512 0.77875 0.91254 1.43632 1.27668 1.54867 1.13888 1.90808 1.51254 1.55568 1.48214 1.19982 0.94306 0.91723 1.17978 1.17507 0.75668 0.85725 0.81634 1.90730 1.54078 1.69601 1.32269 1.48534 1.66524 1.12830 1.05773 1.22331 0.99560 0.82120 0.96817 1.22545 0.98954 0.97598 0.93362 0.91659 1.21545 1.02754 0.93427 1.00546 1.21440 0.94975 0.91040 0.86195 0.90420 1.42485 1.05666 1.73225 1.14522 1.19677 0.91929 1.31471 0.93645 0.89903 1.25487 0.96140 1.03141 1.01522 1.69821 1.06564 1.52973 1.32568 0.85166 0.78562 0.76878 0.79704 1.18541 1.22600 1.22550 1.22859 1.00660 0.98262 0.80908 0.91988 0.94576 0.89744 0.77879 0.83057 0.86314 0.74861 0.76160 0.91553 0.89558 0.91220 0.93362 0.91128 0.79435 0.94195 0.91411 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.24 10.35 71.24 0.74 -1.50 16 2 C -0.17 -5.31 6.36 -18.51 -0.12 -5.43 16 3 C 0.01 0.16 11.82 83.12 0.98 1.14 16 4 N -0.53 -10.91 5.90 -182.73 -1.08 -11.99 16 5 H 0.43 5.22 8.96 -92.71 -0.83 4.39 16 6 C 0.08 2.13 5.67 41.78 0.24 2.36 16 7 C -0.08 -1.43 6.01 29.10 0.17 -1.26 16 8 C 0.51 11.50 8.09 87.66 0.71 12.21 16 9 N -0.84 -10.37 8.87 -173.53 -1.54 -11.91 16 10 O -0.58 -20.08 16.87 -3.04 -0.05 -20.13 16 11 C -0.23 -7.79 5.22 -19.04 -0.10 -7.89 16 12 C 0.61 23.05 7.33 86.62 0.63 23.69 16 13 O -0.59 -26.57 17.36 -4.11 -0.07 -26.64 16 14 N -0.60 -20.63 3.33 -815.83 -2.71 -23.34 16 15 C 0.11 3.46 6.37 86.86 0.55 4.02 16 16 C -0.10 -3.29 3.27 -9.40 -0.03 -3.32 16 17 H 0.06 2.30 8.01 -2.39 -0.02 2.28 16 18 C -0.13 -3.33 9.30 71.98 0.67 -2.66 16 19 C 0.17 6.29 3.08 46.18 0.14 6.43 16 20 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 21 N -0.72 -33.62 5.15 -317.30 -1.64 -35.25 16 22 C -0.24 -12.02 9.96 84.04 0.84 -11.19 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 24 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 25 N -0.97 -57.10 13.06 21.65 0.28 -56.82 16 26 Si 0.97 43.69 29.55 68.60 2.03 45.72 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 30 C 0.10 3.46 6.23 86.73 0.54 4.00 16 31 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 35 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.12 2.11 8.04 -2.39 -0.02 2.09 16 37 H 0.42 1.95 8.83 -92.71 -0.82 1.13 16 38 H 0.41 4.68 8.93 -92.70 -0.83 3.85 16 39 H 0.07 2.10 8.04 -2.39 -0.02 2.08 16 40 H 0.09 2.24 8.04 -2.39 -0.02 2.23 16 41 H 0.07 1.62 8.11 -2.38 -0.02 1.60 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.37 19.31 7.76 -92.71 -0.72 18.60 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 47 H 0.05 1.87 8.03 -2.39 -0.02 1.85 16 Total: -1.00 -83.93 397.87 -0.51 -84.43 By element: Atomic # 1 Polarization: 40.85 SS G_CDS: -2.16 Total: 38.69 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 6.44 Total: 17.24 kcal Atomic # 7 Polarization: -132.62 SS G_CDS: -6.68 Total: -139.30 kcal Atomic # 8 Polarization: -46.65 SS G_CDS: -0.12 Total: -46.77 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -83.93 -0.51 -84.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939172028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.706 kcal (2) G-P(sol) polarization free energy of solvation -83.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds