Wall clock time and date at job start Tue Mar 31 2020 17:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32167 * 119.13859 * 2 1 4 4 C 1.32358 * 120.60433 * 179.97438 * 3 2 1 5 5 C 1.47508 * 120.50973 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00062 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00120 * 0.02562 * 5 4 3 8 8 C 1.46492 * 120.00231 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.45268 * 35.02571 * 8 7 5 10 10 C 1.53047 * 109.45786 * 275.06604 * 8 7 5 11 11 C 1.52760 * 109.38266 * 301.21717 * 10 8 7 12 12 N 1.46929 * 109.00960 * 305.59022 * 11 10 8 13 13 C 1.36938 * 120.63068 * 233.58060 * 12 11 10 14 14 H 1.08000 * 119.99931 * 152.30316 * 13 12 11 15 15 C 1.38817 * 119.99746 * 332.30577 * 13 12 11 16 16 N 1.31612 * 120.00092 * 342.50375 * 15 13 12 17 17 Si 1.86798 * 119.99583 * 162.77719 * 15 13 12 18 18 H 1.48500 * 109.47109 * 60.00223 * 17 15 13 19 19 H 1.48508 * 109.46991 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47656 * 299.99742 * 17 15 13 21 21 C 1.46929 * 118.73866 * 53.30862 * 12 11 10 22 22 C 1.53039 * 109.46351 * 154.99826 * 8 7 5 23 23 H 1.09000 * 109.52347 * 178.61778 * 22 8 7 24 24 C 1.52996 * 109.49629 * 298.70028 * 22 8 7 25 25 C 1.46678 * 118.98255 * 0.25095 * 4 3 2 26 26 O 1.21857 * 120.78547 * 179.72808 * 25 4 3 27 27 N 1.35148 * 118.42734 * 359.46428 * 25 4 3 28 28 H 0.97008 * 120.36680 * 180.23557 * 27 25 4 29 29 C 1.34899 * 119.26481 * 0.55734 * 27 25 4 30 30 C 1.50704 * 119.49869 * 179.70178 * 29 27 25 31 31 H 1.08996 * 109.47418 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47203 * 120.00205 * 1 2 3 33 33 H 1.09011 * 109.46704 * 239.99902 * 1 2 3 34 34 H 0.97004 * 119.99462 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.49959 * 61.29626 * 10 8 7 36 36 H 1.09001 * 109.49807 * 181.36072 * 10 8 7 37 37 H 1.08999 * 109.51393 * 185.70211 * 11 10 8 38 38 H 1.09003 * 109.43370 * 65.42441 * 11 10 8 39 39 H 0.97003 * 120.00017 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.58437 * 66.43102 * 21 12 11 41 41 H 1.08997 * 109.58308 * 186.71283 * 21 12 11 42 42 H 1.09005 * 109.47218 * 179.83670 * 24 22 8 43 43 H 1.08993 * 109.47324 * 299.83576 * 24 22 8 44 44 H 1.09004 * 109.47251 * 59.84253 * 24 22 8 45 45 H 1.09005 * 109.47253 * 269.98238 * 30 29 27 46 46 H 1.09000 * 109.47163 * 29.97981 * 30 29 27 47 47 H 1.09000 * 109.47016 * 149.98152 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4737 1.1883 0.0005 5 6 4.1899 2.4778 -0.0001 6 8 5.4057 2.4981 -0.0001 7 7 3.4966 3.6336 -0.0006 8 6 4.2078 4.9143 -0.0017 9 1 5.1196 4.8227 -0.5919 10 6 4.5673 5.2992 1.4353 11 6 3.2906 5.3965 2.2685 12 7 2.3590 6.3227 1.6104 13 6 1.8246 7.3800 2.2972 14 1 1.5295 8.2740 1.7681 15 6 1.6622 7.3026 3.6737 16 7 1.6877 6.1319 4.2746 17 14 1.3998 8.8594 4.6721 18 1 0.1693 9.5463 4.2037 19 1 1.2540 8.5082 6.1077 20 1 2.5667 9.7613 4.4988 21 6 2.0165 6.0965 0.1996 22 6 3.3119 5.9946 -0.6120 23 1 3.8307 6.9529 -0.5909 24 6 2.9800 5.6252 -2.0591 25 6 4.2171 -0.0762 -0.0045 26 8 5.4356 -0.0834 -0.0092 27 7 3.5185 -1.2332 0.0016 28 1 3.9816 -2.0856 0.0019 29 6 2.1702 -1.1894 0.0006 30 6 1.3861 -2.4764 0.0005 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 -0.3633 -0.5139 0.8901 34 1 2.5267 3.6174 -0.0010 35 1 5.2243 4.5411 1.8614 36 1 5.0751 6.2636 1.4375 37 1 3.5330 5.7681 3.2641 38 1 2.8320 4.4107 2.3459 39 1 1.5738 6.0778 5.2364 40 1 1.4520 5.1690 0.1049 41 1 1.4166 6.9287 -0.1687 42 1 2.3395 6.3935 -2.4925 43 1 3.9018 5.5529 -2.6362 44 1 2.4621 4.6663 -2.0798 45 1 1.1974 -2.7869 -1.0272 46 1 1.9568 -3.2497 0.5148 47 1 0.4368 -2.3234 0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942168338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:07 Heat of formation + Delta-G solvation = -12.010413 kcal Electronic energy + Delta-G solvation = -30046.147719 eV Core-core repulsion = 26036.891836 eV Total energy + Delta-G solvation = -4009.255883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.44 seconds Orbital eigenvalues (eV) -41.88225 -39.58912 -38.10597 -37.40989 -35.56965 -34.13460 -33.35192 -32.28800 -31.05483 -30.09189 -29.25322 -26.99197 -25.76529 -25.14158 -24.82966 -23.36312 -21.94366 -21.04204 -20.69568 -18.97396 -18.56016 -18.29295 -17.00940 -16.55719 -16.39870 -15.94489 -15.18490 -14.77901 -14.63289 -14.28712 -14.25333 -13.92228 -13.84003 -13.68297 -13.47171 -13.34513 -13.26725 -13.08455 -12.81875 -12.45862 -12.23448 -12.05105 -11.96780 -11.50090 -11.37503 -11.34244 -11.29145 -10.99909 -10.72443 -10.63215 -10.30882 -10.13743 -10.01875 -9.95699 -9.64555 -9.36917 -9.29039 -8.49569 -8.39019 -8.12657 -6.61083 -5.73195 -3.15423 -0.00265 1.52144 2.20863 2.77973 3.40211 3.41918 3.47803 3.49208 3.74044 3.76690 4.05737 4.14676 4.41687 4.53825 4.78055 4.95256 5.03277 5.19713 5.26437 5.34398 5.38946 5.39590 5.45759 5.58837 5.67106 5.71192 5.86517 6.00456 6.08321 6.13817 6.18504 6.18739 6.26338 6.38301 6.47250 6.55357 6.74620 6.75786 6.87852 7.00818 7.11285 7.36086 7.46649 7.61122 7.75632 7.84685 8.02146 8.49859 8.63340 9.26344 9.90262 10.46730 11.34750 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.003471 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.439592 B = 8064.287252 C = 8761.011407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.025 4.025 3 N -0.348 5.348 4 C 0.016 3.984 5 C 0.577 3.423 6 O -0.517 6.517 7 N -0.690 5.690 8 C 0.160 3.840 9 H 0.075 0.925 10 C -0.155 4.155 11 C 0.174 3.826 12 N -0.591 5.591 13 C -0.253 4.253 14 H 0.065 0.935 15 C 0.004 3.996 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.284 1.284 21 C 0.152 3.848 22 C -0.118 4.118 23 H 0.082 0.918 24 C -0.142 4.142 25 C 0.496 3.504 26 O -0.485 6.485 27 N -0.588 5.588 28 H 0.419 0.581 29 C 0.147 3.853 30 C -0.130 4.130 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.409 0.591 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.019 0.981 39 H 0.253 0.747 40 H 0.016 0.984 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 -17.742 -11.473 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.151 4.151 3 N -0.066 5.066 4 C -0.153 4.153 5 C 0.360 3.640 6 O -0.392 6.392 7 N -0.343 5.343 8 C 0.056 3.944 9 H 0.093 0.907 10 C -0.195 4.195 11 C 0.049 3.951 12 N -0.313 5.313 13 C -0.383 4.383 14 H 0.082 0.918 15 C -0.195 4.195 16 N -0.545 5.545 17 Si 0.731 3.269 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.025 3.975 22 C -0.139 4.139 23 H 0.100 0.900 24 C -0.200 4.200 25 C 0.288 3.712 26 O -0.356 6.356 27 N -0.223 5.223 28 H 0.259 0.741 29 C 0.032 3.968 30 C -0.187 4.187 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.247 0.753 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.593 -16.933 -11.271 20.506 hybrid contribution -0.001 -0.520 0.707 0.878 sum -2.594 -17.453 -10.564 20.566 Atomic orbital electron populations 1.20547 0.86916 1.04828 1.02070 1.20160 0.97968 0.85539 1.11458 1.67599 1.08448 1.29484 1.01030 1.24056 0.88851 0.94093 1.08341 1.17011 0.86543 0.82214 0.78185 1.90856 1.12348 1.86562 1.49384 1.45892 1.11133 1.04677 1.72579 1.20948 0.94584 0.81295 0.97533 0.90737 1.22507 1.00973 1.00510 0.95517 1.20630 0.86010 0.92494 0.96008 1.44042 1.49817 1.31169 1.06296 1.19130 1.36684 0.92469 0.89985 0.91755 1.25004 1.00353 0.96265 0.97882 1.70039 1.53369 1.21913 1.09155 0.86401 0.78127 0.83184 0.79212 1.20957 1.21733 1.21077 1.20908 0.92405 0.98254 0.85933 1.21944 0.99419 0.98151 0.94395 0.89951 1.21769 1.00921 1.01163 0.96146 1.19114 0.88436 0.83968 0.79699 1.91050 1.11417 1.85277 1.47847 1.43716 1.06380 1.11906 1.60333 0.74070 1.21504 0.83496 0.98984 0.92855 1.21215 1.01011 0.91767 1.04713 0.89639 0.90947 0.90724 0.75332 0.92589 0.91722 0.89685 0.96330 0.93687 0.96617 0.92551 0.92779 0.93306 0.92954 0.88527 0.90039 0.87921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 8.82 36.01 0.32 -0.29 16 2 C -0.03 -0.26 6.70 -83.18 -0.56 -0.82 16 3 N -0.35 -4.93 9.55 -4.84 -0.05 -4.98 16 4 C 0.02 0.26 6.96 -80.46 -0.56 -0.30 16 5 C 0.58 11.09 7.77 -12.48 -0.10 10.99 16 6 O -0.52 -11.56 15.17 -15.19 -0.23 -11.79 16 7 N -0.69 -12.50 3.59 -54.82 -0.20 -12.69 16 8 C 0.16 2.98 2.21 -67.89 -0.15 2.83 16 9 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 10 C -0.15 -3.26 5.75 -26.83 -0.15 -3.41 16 11 C 0.17 4.27 5.03 -3.93 -0.02 4.25 16 12 N -0.59 -14.63 3.00 -172.58 -0.52 -15.15 16 13 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 14 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 15 C 0.00 0.10 4.91 -17.43 -0.09 0.02 16 16 N -0.90 -26.27 11.20 55.49 0.62 -25.64 16 17 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.15 3.07 5.51 -3.71 -0.02 3.05 16 22 C -0.12 -2.04 2.67 -90.50 -0.24 -2.28 16 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 24 C -0.14 -2.01 9.05 37.16 0.34 -1.67 16 25 C 0.50 7.60 7.93 -12.69 -0.10 7.50 16 26 O -0.48 -9.26 16.40 -15.43 -0.25 -9.51 16 27 N -0.59 -5.60 5.29 -9.45 -0.05 -5.65 16 28 H 0.42 2.64 8.81 -40.82 -0.36 2.28 16 29 C 0.15 1.13 6.78 -81.98 -0.56 0.57 16 30 C -0.13 -0.35 9.59 36.01 0.35 -0.01 16 31 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.07 0.40 7.36 -51.92 -0.38 0.02 16 34 H 0.41 7.26 6.09 -40.82 -0.25 7.01 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.08 2.36 6.04 -51.93 -0.31 2.05 16 38 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.02 0.32 6.64 -51.93 -0.34 -0.02 16 41 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.73 7.53 -51.93 -0.39 0.34 16 45 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 47 H 0.10 0.18 6.44 -51.93 -0.33 -0.15 16 LS Contribution 375.90 15.07 5.66 5.66 Total: -1.00 -36.14 375.90 -8.65 -44.79 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.93 Total: 4.83 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: -1.69 Total: 13.38 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.19 Total: -64.11 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.48 Total: -21.31 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.14 -8.65 -44.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942168338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.783 kcal (2) G-P(sol) polarization free energy of solvation -36.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.44 seconds