Wall clock time and date at job start Tue Mar 31 2020 17:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32167 * 119.13859 * 2 1 4 4 C 1.32358 * 120.60433 * 179.97438 * 3 2 1 5 5 C 1.47508 * 120.50973 * 179.97438 * 4 3 2 6 6 O 1.21598 * 120.00062 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00120 * 0.02562 * 5 4 3 8 8 C 1.46492 * 120.00231 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.45268 * 35.02571 * 8 7 5 10 10 C 1.53047 * 109.45786 * 275.06604 * 8 7 5 11 11 C 1.52760 * 109.38266 * 301.21717 * 10 8 7 12 12 N 1.46929 * 109.00960 * 305.59022 * 11 10 8 13 13 C 1.36938 * 120.63068 * 233.58060 * 12 11 10 14 14 H 1.08000 * 119.99931 * 152.30316 * 13 12 11 15 15 C 1.38817 * 119.99746 * 332.30577 * 13 12 11 16 16 N 1.31612 * 120.00092 * 342.50375 * 15 13 12 17 17 Si 1.86798 * 119.99583 * 162.77719 * 15 13 12 18 18 H 1.48500 * 109.47109 * 60.00223 * 17 15 13 19 19 H 1.48508 * 109.46991 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47656 * 299.99742 * 17 15 13 21 21 C 1.46929 * 118.73866 * 53.30862 * 12 11 10 22 22 C 1.53039 * 109.46351 * 154.99826 * 8 7 5 23 23 H 1.09000 * 109.52347 * 178.61778 * 22 8 7 24 24 C 1.52996 * 109.49629 * 298.70028 * 22 8 7 25 25 C 1.46678 * 118.98255 * 0.25095 * 4 3 2 26 26 O 1.21857 * 120.78547 * 179.72808 * 25 4 3 27 27 N 1.35148 * 118.42734 * 359.46428 * 25 4 3 28 28 H 0.97008 * 120.36680 * 180.23557 * 27 25 4 29 29 C 1.34899 * 119.26481 * 0.55734 * 27 25 4 30 30 C 1.50704 * 119.49869 * 179.70178 * 29 27 25 31 31 H 1.08996 * 109.47418 * 359.97438 * 1 2 3 32 32 H 1.08998 * 109.47203 * 120.00205 * 1 2 3 33 33 H 1.09011 * 109.46704 * 239.99902 * 1 2 3 34 34 H 0.97004 * 119.99462 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.49959 * 61.29626 * 10 8 7 36 36 H 1.09001 * 109.49807 * 181.36072 * 10 8 7 37 37 H 1.08999 * 109.51393 * 185.70211 * 11 10 8 38 38 H 1.09003 * 109.43370 * 65.42441 * 11 10 8 39 39 H 0.97003 * 120.00017 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.58437 * 66.43102 * 21 12 11 41 41 H 1.08997 * 109.58308 * 186.71283 * 21 12 11 42 42 H 1.09005 * 109.47218 * 179.83670 * 24 22 8 43 43 H 1.08993 * 109.47324 * 299.83576 * 24 22 8 44 44 H 1.09004 * 109.47251 * 59.84253 * 24 22 8 45 45 H 1.09005 * 109.47253 * 269.98238 * 30 29 27 46 46 H 1.09000 * 109.47163 * 29.97981 * 30 29 27 47 47 H 1.09000 * 109.47016 * 149.98152 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4737 1.1883 0.0005 5 6 4.1899 2.4778 -0.0001 6 8 5.4057 2.4981 -0.0001 7 7 3.4966 3.6336 -0.0006 8 6 4.2078 4.9143 -0.0017 9 1 5.1196 4.8227 -0.5919 10 6 4.5673 5.2992 1.4353 11 6 3.2906 5.3965 2.2685 12 7 2.3590 6.3227 1.6104 13 6 1.8246 7.3800 2.2972 14 1 1.5295 8.2740 1.7681 15 6 1.6622 7.3026 3.6737 16 7 1.6877 6.1319 4.2746 17 14 1.3998 8.8594 4.6721 18 1 0.1693 9.5463 4.2037 19 1 1.2540 8.5082 6.1077 20 1 2.5667 9.7613 4.4988 21 6 2.0165 6.0965 0.1996 22 6 3.3119 5.9946 -0.6120 23 1 3.8307 6.9529 -0.5909 24 6 2.9800 5.6252 -2.0591 25 6 4.2171 -0.0762 -0.0045 26 8 5.4356 -0.0834 -0.0092 27 7 3.5185 -1.2332 0.0016 28 1 3.9816 -2.0856 0.0019 29 6 2.1702 -1.1894 0.0006 30 6 1.3861 -2.4764 0.0005 31 1 -0.3634 1.0276 0.0005 32 1 -0.3633 -0.5138 -0.8899 33 1 -0.3633 -0.5139 0.8901 34 1 2.5267 3.6174 -0.0010 35 1 5.2243 4.5411 1.8614 36 1 5.0751 6.2636 1.4375 37 1 3.5330 5.7681 3.2641 38 1 2.8320 4.4107 2.3459 39 1 1.5738 6.0778 5.2364 40 1 1.4520 5.1690 0.1049 41 1 1.4166 6.9287 -0.1687 42 1 2.3395 6.3935 -2.4925 43 1 3.9018 5.5529 -2.6362 44 1 2.4621 4.6663 -2.0798 45 1 1.1974 -2.7869 -1.0272 46 1 1.9568 -3.2497 0.5148 47 1 0.4368 -2.3234 0.5139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942168338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:04 Heat of formation + Delta-G solvation = -38.254611 kcal Electronic energy + Delta-G solvation = -30047.285753 eV Core-core repulsion = 26036.891836 eV Total energy + Delta-G solvation = -4010.393916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.87595 -41.07407 -39.28976 -38.90334 -36.58044 -35.95549 -34.26413 -33.73428 -32.89152 -31.76689 -29.96189 -27.99931 -27.38150 -26.89086 -25.59161 -24.59442 -23.58475 -22.75312 -21.96109 -20.21244 -19.82770 -19.50692 -18.65874 -18.00318 -17.38134 -17.06664 -16.86004 -16.57570 -16.09047 -15.68373 -15.40542 -15.26530 -15.05503 -14.92064 -14.74798 -14.58976 -14.22395 -14.06933 -13.83881 -13.75198 -13.52564 -13.14929 -12.94988 -12.79344 -12.74930 -12.68094 -12.51657 -12.39179 -12.35151 -12.34049 -12.21326 -11.94449 -11.65978 -11.47204 -11.33702 -11.11440 -10.51422 -10.49486 -10.01077 -9.07516 -8.65250 -7.84000 -5.29102 -0.95448 0.51039 1.26007 1.48066 1.51512 1.57119 1.57472 2.20523 2.53561 2.58045 2.95744 3.03457 3.30672 3.42197 3.67302 3.74491 3.79723 3.96525 4.07332 4.13753 4.40844 4.54949 4.61817 4.65827 4.66733 4.70647 4.78003 4.82784 4.89021 4.94424 4.98938 5.02704 5.07019 5.10814 5.19240 5.22590 5.24993 5.30672 5.43156 5.51561 5.52552 5.59030 5.66898 5.73675 6.36374 6.40466 6.55164 6.67514 7.16262 7.22479 7.87911 8.40745 9.22121 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.003471 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.439592 B = 8064.287252 C = 8761.011407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.051 4.051 3 N -0.347 5.347 4 C -0.063 4.063 5 C 0.576 3.424 6 O -0.564 6.564 7 N -0.686 5.686 8 C 0.165 3.835 9 H 0.076 0.924 10 C -0.144 4.144 11 C 0.191 3.809 12 N -0.606 5.606 13 C -0.262 4.262 14 H 0.071 0.929 15 C -0.050 4.050 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.297 1.297 20 H -0.281 1.281 21 C 0.151 3.849 22 C -0.105 4.105 23 H 0.083 0.917 24 C -0.133 4.133 25 C 0.492 3.508 26 O -0.539 6.539 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.201 3.799 30 C -0.132 4.132 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.410 0.590 35 H 0.042 0.958 36 H 0.067 0.933 37 H 0.048 0.952 38 H -0.005 1.005 39 H 0.248 0.752 40 H 0.019 0.981 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.130 0.870 46 H 0.106 0.894 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.299 -19.999 -13.135 24.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.181 4.181 3 N -0.065 5.065 4 C -0.224 4.224 5 C 0.362 3.638 6 O -0.442 6.442 7 N -0.338 5.338 8 C 0.060 3.940 9 H 0.094 0.906 10 C -0.184 4.184 11 C 0.065 3.935 12 N -0.329 5.329 13 C -0.392 4.392 14 H 0.089 0.911 15 C -0.245 4.245 16 N -0.580 5.580 17 Si 0.794 3.206 18 H -0.197 1.197 19 H -0.224 1.224 20 H -0.207 1.207 21 C 0.026 3.974 22 C -0.126 4.126 23 H 0.101 0.899 24 C -0.190 4.190 25 C 0.287 3.713 26 O -0.417 6.417 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.081 3.919 30 C -0.188 4.188 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.248 0.752 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.066 0.934 38 H 0.013 0.987 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.148 0.852 46 H 0.125 0.875 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.239 -19.163 -12.973 23.727 hybrid contribution 0.556 -0.143 1.200 1.331 sum -4.683 -19.306 -11.773 23.092 Atomic orbital electron populations 1.20706 0.84146 1.04428 1.04858 1.20979 0.99769 0.85315 1.12077 1.67481 1.07643 1.32057 0.99273 1.23254 0.89567 0.93117 1.16502 1.17462 0.86240 0.83399 0.76744 1.90797 1.14225 1.87439 1.51773 1.45785 1.10918 1.04430 1.72683 1.20853 0.95292 0.82253 0.95588 0.90602 1.22339 0.98918 1.00256 0.96909 1.20255 0.87286 0.90973 0.94956 1.44239 1.49965 1.30710 1.07939 1.19512 1.35793 0.93341 0.90538 0.91087 1.25768 1.00869 0.98918 0.98970 1.70205 1.55038 1.23945 1.08843 0.85370 0.78323 0.79718 0.77203 1.19736 1.22360 1.20730 1.21064 0.94054 0.98537 0.83780 1.21804 0.97265 0.97609 0.95881 0.89877 1.21690 1.01904 1.01790 0.93661 1.18993 0.87842 0.85038 0.79454 1.91004 1.13420 1.86151 1.51086 1.43650 1.07311 1.11420 1.57412 0.71727 1.22478 0.82547 1.00925 0.85912 1.21611 1.01188 0.88778 1.07267 0.91806 0.87531 0.88378 0.75234 0.93922 0.91478 0.93370 0.98735 0.94339 0.96365 0.91804 0.90806 0.92194 0.92863 0.85198 0.87523 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 8.82 71.24 0.63 -0.24 16 2 C -0.05 -0.92 6.70 42.03 0.28 -0.63 16 3 N -0.35 -9.90 9.55 -169.24 -1.62 -11.51 16 4 C -0.06 -2.19 6.96 43.72 0.30 -1.89 16 5 C 0.58 23.82 7.77 86.69 0.67 24.50 16 6 O -0.56 -27.38 15.17 15.55 0.24 -27.14 16 7 N -0.69 -26.28 3.59 -445.61 -1.60 -27.88 16 8 C 0.16 6.35 2.21 45.02 0.10 6.45 16 9 H 0.08 2.95 7.58 -2.39 -0.02 2.93 16 10 C -0.14 -6.43 5.75 30.53 0.18 -6.25 16 11 C 0.19 9.93 5.03 86.22 0.43 10.37 16 12 N -0.61 -30.77 3.00 -699.91 -2.10 -32.87 16 13 C -0.26 -14.47 9.59 84.03 0.81 -13.66 16 14 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 15 C -0.05 -2.83 4.91 84.86 0.42 -2.41 16 16 N -0.93 -56.56 11.20 21.65 0.24 -56.32 16 17 Si 0.97 45.52 29.59 68.60 2.03 47.55 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 C 0.15 6.12 5.51 86.36 0.48 6.60 16 22 C -0.11 -3.60 2.67 -10.72 -0.03 -3.63 16 23 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 24 C -0.13 -3.55 9.05 71.98 0.65 -2.90 16 25 C 0.49 15.57 7.93 86.39 0.68 16.25 16 26 O -0.54 -21.97 16.40 14.72 0.24 -21.73 16 27 N -0.56 -9.53 5.29 -301.76 -1.60 -11.13 16 28 H 0.44 4.22 8.81 -92.70 -0.82 3.40 16 29 C 0.20 2.29 6.78 41.61 0.28 2.57 16 30 C -0.13 0.18 9.59 71.24 0.68 0.86 16 31 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.11 0.39 8.08 -2.39 -0.02 0.37 16 33 H 0.10 0.57 7.36 -2.38 -0.02 0.56 16 34 H 0.41 15.26 6.09 -92.71 -0.56 14.69 16 35 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 38 H -0.01 -0.30 7.74 -2.39 -0.02 -0.32 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 41 H 0.06 2.48 7.93 -2.39 -0.02 2.46 16 42 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.42 7.53 -2.38 -0.02 1.40 16 45 H 0.13 -0.69 8.14 -2.38 -0.02 -0.71 16 46 H 0.11 -0.47 8.14 -2.39 -0.02 -0.49 16 47 H 0.13 -0.49 6.44 -2.39 -0.02 -0.50 16 Total: -1.00 -87.55 375.90 2.04 -85.51 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.37 Total: 19.52 kcal Atomic # 6 Polarization: 29.42 SS G_CDS: 6.57 Total: 35.99 kcal Atomic # 7 Polarization: -133.04 SS G_CDS: -6.67 Total: -139.71 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: 0.48 Total: -48.87 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -87.55 2.04 -85.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942168338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.259 kcal (2) G-P(sol) polarization free energy of solvation -87.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds