Wall clock time and date at job start Tue Mar 31 2020 17:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 N 1.32168 * 119.14067 * 2 1 4 4 C 1.32357 * 120.60500 * 180.26129 * 3 2 1 5 5 C 1.47501 * 120.51191 * 179.71416 * 4 3 2 6 6 O 1.21602 * 120.00384 * 179.72253 * 5 4 3 7 7 N 1.34780 * 119.99885 * 359.72941 * 5 4 3 8 8 C 1.46501 * 120.00039 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.45940 * 325.00632 * 8 7 5 10 10 C 1.53044 * 109.44738 * 84.96543 * 8 7 5 11 11 C 1.53194 * 109.30852 * 58.64828 * 10 8 7 12 12 N 1.46927 * 108.77808 * 54.63615 * 11 10 8 13 13 C 1.36933 * 120.63262 * 126.40914 * 12 11 10 14 14 H 1.08006 * 120.00203 * 207.66395 * 13 12 11 15 15 C 1.38814 * 119.99777 * 27.65937 * 13 12 11 16 16 N 1.31610 * 120.00176 * 17.38073 * 15 13 12 17 17 Si 1.86806 * 119.99706 * 197.37443 * 15 13 12 18 18 H 1.48493 * 109.47318 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46933 * 120.00298 * 17 15 13 20 20 H 1.48495 * 109.47138 * 239.99999 * 17 15 13 21 21 C 1.46924 * 118.73603 * 306.38944 * 12 11 10 22 22 C 1.53039 * 109.46076 * 205.02706 * 8 7 5 23 23 H 1.09007 * 109.49726 * 181.41003 * 22 8 7 24 24 C 1.53005 * 109.49557 * 61.34629 * 22 8 7 25 25 C 1.46675 * 118.97921 * 359.44908 * 4 3 2 26 26 O 1.21862 * 120.78325 * 180.25006 * 25 4 3 27 27 N 1.35149 * 118.43320 * 0.27335 * 25 4 3 28 28 H 0.97001 * 120.37072 * 179.97438 * 27 25 4 29 29 C 1.34895 * 119.26517 * 359.97438 * 27 25 4 30 30 C 1.50697 * 119.50508 * 180.02562 * 29 27 25 31 31 H 1.08993 * 109.47006 * 270.30003 * 1 2 3 32 32 H 1.08995 * 109.46741 * 30.29609 * 1 2 3 33 33 H 1.09001 * 109.46723 * 150.29761 * 1 2 3 34 34 H 0.96996 * 119.99738 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.49944 * 178.59728 * 10 8 7 36 36 H 1.09002 * 109.50118 * 298.70251 * 10 8 7 37 37 H 1.09003 * 109.58739 * 294.84592 * 11 10 8 38 38 H 1.08998 * 109.58323 * 174.42094 * 11 10 8 39 39 H 0.97000 * 120.00425 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.59124 * 293.81782 * 21 12 11 41 41 H 1.09007 * 109.58592 * 173.39168 * 21 12 11 42 42 H 1.09001 * 109.47324 * 59.99860 * 24 22 8 43 43 H 1.08996 * 109.46827 * 180.02562 * 24 22 8 44 44 H 1.08996 * 109.46728 * 299.99689 * 24 22 8 45 45 H 1.09006 * 109.46785 * 0.02562 * 30 29 27 46 46 H 1.09003 * 109.47050 * 120.00086 * 30 29 27 47 47 H 1.08998 * 109.47094 * 240.00228 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0052 5 6 4.1900 2.4777 -0.0115 6 8 5.4058 2.4980 -0.0112 7 7 3.4967 3.6335 -0.0176 8 6 4.2080 4.9143 -0.0233 9 1 5.1200 4.8258 0.5671 10 6 4.5670 5.2913 -1.4624 11 6 3.2857 5.3807 -2.2974 12 7 2.3586 6.3137 -1.6425 13 6 1.8233 7.3666 -2.3352 14 1 1.5315 8.2651 -1.8115 15 6 1.6557 7.2793 -3.7104 16 7 1.6794 6.1044 -4.3030 17 14 1.3962 8.8296 -4.7199 18 1 1.4110 10.0128 -3.8228 19 1 2.4846 8.9554 -5.7224 20 1 0.0874 8.7529 -5.4172 21 6 2.0166 6.0951 -0.2305 22 6 3.3121 5.9977 0.5813 23 1 3.8312 6.9559 0.5545 24 6 2.9813 5.6366 2.0309 25 6 4.2171 -0.0763 0.0014 26 8 5.4357 -0.0835 0.0014 27 7 3.5185 -1.2332 0.0069 28 1 3.9815 -2.0856 0.0109 29 6 2.1703 -1.1895 0.0067 30 6 1.3860 -2.4763 0.0134 31 1 -0.3633 0.0054 1.0276 32 1 -0.3632 0.8873 -0.5184 33 1 -0.3633 -0.8927 -0.5092 34 1 2.5269 3.6173 -0.0181 35 1 5.0743 6.2561 -1.4701 36 1 5.2240 4.5309 -1.8847 37 1 2.8248 4.3953 -2.3659 38 1 3.5253 5.7447 -3.2964 39 1 1.5626 6.0434 -5.2640 40 1 1.4521 5.1681 -0.1304 41 1 1.4188 6.9305 0.1343 42 1 3.9038 5.5649 2.6071 43 1 2.3429 6.4082 2.4609 44 1 2.4613 4.6790 2.0571 45 1 2.0745 -3.3214 0.0182 46 1 0.7582 -2.5145 0.9036 47 1 0.7582 -2.5238 -0.8764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942168339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:12 Heat of formation + Delta-G solvation = -12.043720 kcal Electronic energy + Delta-G solvation = -30046.476227 eV Core-core repulsion = 26037.218900 eV Total energy + Delta-G solvation = -4009.257327 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.88407 -39.58510 -38.10372 -37.40533 -35.57530 -34.13754 -33.35004 -32.28787 -31.03919 -30.09197 -29.25146 -26.98272 -25.76564 -25.14435 -24.83800 -23.36680 -21.94145 -21.04702 -20.69504 -18.97856 -18.55258 -18.29438 -17.00817 -16.56004 -16.39343 -15.94514 -15.18310 -14.78492 -14.63037 -14.27848 -14.25853 -13.92659 -13.84296 -13.67102 -13.51098 -13.34970 -13.25627 -13.08955 -12.80900 -12.46980 -12.26408 -12.03947 -11.95245 -11.50143 -11.37260 -11.33832 -11.28343 -11.01266 -10.72937 -10.65411 -10.26766 -10.13195 -10.01939 -9.95929 -9.65290 -9.36093 -9.28734 -8.49697 -8.40009 -8.12309 -6.61380 -5.73693 -3.16025 0.00125 1.52011 2.21259 2.78017 3.39784 3.40623 3.48426 3.50330 3.73324 3.76625 4.05476 4.13570 4.38833 4.53368 4.79353 4.95487 5.00835 5.17917 5.26427 5.34410 5.39026 5.42840 5.45420 5.58880 5.67820 5.71585 5.87253 6.00299 6.08409 6.13105 6.18523 6.18759 6.26468 6.38388 6.47151 6.55294 6.74169 6.75314 6.87553 7.00596 7.11171 7.35817 7.46285 7.61081 7.75643 7.84885 8.02140 8.49451 8.63321 9.25948 9.89795 10.46302 11.34173 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003473 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.269563 B = 8059.494981 C = 8757.637974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.025 4.025 3 N -0.349 5.349 4 C 0.016 3.984 5 C 0.577 3.423 6 O -0.517 6.517 7 N -0.690 5.690 8 C 0.160 3.840 9 H 0.075 0.925 10 C -0.155 4.155 11 C 0.174 3.826 12 N -0.591 5.591 13 C -0.251 4.251 14 H 0.066 0.934 15 C 0.003 3.997 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.152 3.848 22 C -0.118 4.118 23 H 0.082 0.918 24 C -0.142 4.142 25 C 0.496 3.504 26 O -0.485 6.485 27 N -0.587 5.587 28 H 0.419 0.581 29 C 0.146 3.854 30 C -0.126 4.126 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.016 0.984 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 -17.660 11.561 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.151 4.151 3 N -0.066 5.066 4 C -0.153 4.153 5 C 0.360 3.640 6 O -0.391 6.391 7 N -0.343 5.343 8 C 0.056 3.944 9 H 0.093 0.907 10 C -0.195 4.195 11 C 0.049 3.951 12 N -0.314 5.314 13 C -0.381 4.381 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.545 5.545 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.025 3.975 22 C -0.139 4.139 23 H 0.100 0.900 24 C -0.200 4.200 25 C 0.288 3.712 26 O -0.356 6.356 27 N -0.223 5.223 28 H 0.259 0.741 29 C 0.031 3.969 30 C -0.183 4.183 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.118 0.882 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.574 -16.842 11.378 20.487 hybrid contribution -0.009 -0.541 -0.720 0.901 sum -2.583 -17.383 10.658 20.553 Atomic orbital electron populations 1.20555 0.86883 1.04026 1.02995 1.20156 0.97978 0.85538 1.11462 1.67560 1.08446 1.29522 1.01047 1.24052 0.88826 0.94098 1.08332 1.17012 0.86544 0.82214 0.78185 1.90857 1.12344 1.86557 1.49391 1.45896 1.11133 1.04682 1.72575 1.20952 0.94584 0.81292 0.97541 0.90743 1.22581 1.00957 1.00515 0.95470 1.20725 0.85983 0.92367 0.96064 1.44073 1.50028 1.31184 1.06081 1.19213 1.36416 0.92411 0.90028 0.91659 1.25015 1.00379 0.96245 0.97944 1.70052 1.53536 1.21614 1.09296 0.86265 0.77277 0.83156 0.80315 1.20281 1.21642 1.21835 1.20913 0.92412 0.98263 0.85935 1.21947 0.99421 0.98140 0.94394 0.89955 1.21769 1.00918 1.01177 0.96134 1.19121 0.88445 0.83976 0.79704 1.91051 1.11416 1.85285 1.47843 1.43753 1.06344 1.11899 1.60311 0.74072 1.21515 0.83505 0.98935 0.92954 1.21185 1.00438 0.91365 1.05327 0.90761 0.89750 0.90799 0.75331 0.91699 0.92620 0.96291 0.89652 0.93789 0.96603 0.92547 0.93304 0.92780 0.92957 0.90460 0.88212 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.65 36.01 0.35 -0.27 16 2 C -0.03 -0.26 6.70 -83.18 -0.56 -0.82 16 3 N -0.35 -4.94 9.57 -4.84 -0.05 -4.98 16 4 C 0.02 0.26 6.96 -80.46 -0.56 -0.30 16 5 C 0.58 11.09 7.77 -12.48 -0.10 10.99 16 6 O -0.52 -11.57 15.17 -15.20 -0.23 -11.80 16 7 N -0.69 -12.50 3.59 -54.81 -0.20 -12.70 16 8 C 0.16 2.97 2.21 -67.89 -0.15 2.82 16 9 H 0.07 1.39 7.58 -51.93 -0.39 1.00 16 10 C -0.16 -3.26 5.77 -26.61 -0.15 -3.41 16 11 C 0.17 4.27 5.05 -3.71 -0.02 4.25 16 12 N -0.59 -14.62 2.99 -172.32 -0.52 -15.14 16 13 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 14 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 16 N -0.90 -26.26 11.19 55.49 0.62 -25.64 16 17 Si 0.90 21.77 29.59 -169.99 -5.03 16.74 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C 0.15 3.07 5.50 -3.71 -0.02 3.05 16 22 C -0.12 -2.04 2.67 -90.50 -0.24 -2.28 16 23 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 24 C -0.14 -2.01 9.06 37.16 0.34 -1.67 16 25 C 0.50 7.60 7.93 -12.69 -0.10 7.50 16 26 O -0.48 -9.27 16.40 -15.43 -0.25 -9.52 16 27 N -0.59 -5.60 5.29 -9.45 -0.05 -5.65 16 28 H 0.42 2.65 8.64 -40.82 -0.35 2.29 16 29 C 0.15 1.12 6.78 -81.98 -0.56 0.57 16 30 C -0.13 -0.33 8.83 36.00 0.32 -0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.31 6.43 -51.93 -0.33 -0.02 16 34 H 0.41 7.26 6.09 -40.82 -0.25 7.01 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 38 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.02 0.32 6.64 -51.93 -0.34 -0.02 16 41 H 0.06 1.12 7.93 -51.92 -0.41 0.71 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.73 7.54 -51.93 -0.39 0.34 16 45 H 0.08 0.09 7.90 -51.93 -0.41 -0.32 16 46 H 0.10 0.13 8.09 -51.93 -0.42 -0.29 16 47 H 0.10 0.18 7.36 -51.93 -0.38 -0.21 16 LS Contribution 375.64 15.07 5.66 5.66 Total: -1.00 -36.18 375.64 -8.64 -44.81 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.91 Total: 4.79 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: -1.68 Total: 13.42 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.19 Total: -64.10 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.48 Total: -21.32 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.18 -8.64 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942168339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.768 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds