Wall clock time and date at job start Tue Mar 31 2020 17:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 N 1.32168 * 119.14067 * 2 1 4 4 C 1.32357 * 120.60500 * 180.26129 * 3 2 1 5 5 C 1.47501 * 120.51191 * 179.71416 * 4 3 2 6 6 O 1.21602 * 120.00384 * 179.72253 * 5 4 3 7 7 N 1.34780 * 119.99885 * 359.72941 * 5 4 3 8 8 C 1.46501 * 120.00039 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.45940 * 325.00632 * 8 7 5 10 10 C 1.53044 * 109.44738 * 84.96543 * 8 7 5 11 11 C 1.53194 * 109.30852 * 58.64828 * 10 8 7 12 12 N 1.46927 * 108.77808 * 54.63615 * 11 10 8 13 13 C 1.36933 * 120.63262 * 126.40914 * 12 11 10 14 14 H 1.08006 * 120.00203 * 207.66395 * 13 12 11 15 15 C 1.38814 * 119.99777 * 27.65937 * 13 12 11 16 16 N 1.31610 * 120.00176 * 17.38073 * 15 13 12 17 17 Si 1.86806 * 119.99706 * 197.37443 * 15 13 12 18 18 H 1.48493 * 109.47318 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46933 * 120.00298 * 17 15 13 20 20 H 1.48495 * 109.47138 * 239.99999 * 17 15 13 21 21 C 1.46924 * 118.73603 * 306.38944 * 12 11 10 22 22 C 1.53039 * 109.46076 * 205.02706 * 8 7 5 23 23 H 1.09007 * 109.49726 * 181.41003 * 22 8 7 24 24 C 1.53005 * 109.49557 * 61.34629 * 22 8 7 25 25 C 1.46675 * 118.97921 * 359.44908 * 4 3 2 26 26 O 1.21862 * 120.78325 * 180.25006 * 25 4 3 27 27 N 1.35149 * 118.43320 * 0.27335 * 25 4 3 28 28 H 0.97001 * 120.37072 * 179.97438 * 27 25 4 29 29 C 1.34895 * 119.26517 * 359.97438 * 27 25 4 30 30 C 1.50697 * 119.50508 * 180.02562 * 29 27 25 31 31 H 1.08993 * 109.47006 * 270.30003 * 1 2 3 32 32 H 1.08995 * 109.46741 * 30.29609 * 1 2 3 33 33 H 1.09001 * 109.46723 * 150.29761 * 1 2 3 34 34 H 0.96996 * 119.99738 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.49944 * 178.59728 * 10 8 7 36 36 H 1.09002 * 109.50118 * 298.70251 * 10 8 7 37 37 H 1.09003 * 109.58739 * 294.84592 * 11 10 8 38 38 H 1.08998 * 109.58323 * 174.42094 * 11 10 8 39 39 H 0.97000 * 120.00425 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.59124 * 293.81782 * 21 12 11 41 41 H 1.09007 * 109.58592 * 173.39168 * 21 12 11 42 42 H 1.09001 * 109.47324 * 59.99860 * 24 22 8 43 43 H 1.08996 * 109.46827 * 180.02562 * 24 22 8 44 44 H 1.08996 * 109.46728 * 299.99689 * 24 22 8 45 45 H 1.09006 * 109.46785 * 0.02562 * 30 29 27 46 46 H 1.09003 * 109.47050 * 120.00086 * 30 29 27 47 47 H 1.08998 * 109.47094 * 240.00228 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0052 5 6 4.1900 2.4777 -0.0115 6 8 5.4058 2.4980 -0.0112 7 7 3.4967 3.6335 -0.0176 8 6 4.2080 4.9143 -0.0233 9 1 5.1200 4.8258 0.5671 10 6 4.5670 5.2913 -1.4624 11 6 3.2857 5.3807 -2.2974 12 7 2.3586 6.3137 -1.6425 13 6 1.8233 7.3666 -2.3352 14 1 1.5315 8.2651 -1.8115 15 6 1.6557 7.2793 -3.7104 16 7 1.6794 6.1044 -4.3030 17 14 1.3962 8.8296 -4.7199 18 1 1.4110 10.0128 -3.8228 19 1 2.4846 8.9554 -5.7224 20 1 0.0874 8.7529 -5.4172 21 6 2.0166 6.0951 -0.2305 22 6 3.3121 5.9977 0.5813 23 1 3.8312 6.9559 0.5545 24 6 2.9813 5.6366 2.0309 25 6 4.2171 -0.0763 0.0014 26 8 5.4357 -0.0835 0.0014 27 7 3.5185 -1.2332 0.0069 28 1 3.9815 -2.0856 0.0109 29 6 2.1703 -1.1895 0.0067 30 6 1.3860 -2.4763 0.0134 31 1 -0.3633 0.0054 1.0276 32 1 -0.3632 0.8873 -0.5184 33 1 -0.3633 -0.8927 -0.5092 34 1 2.5269 3.6173 -0.0181 35 1 5.0743 6.2561 -1.4701 36 1 5.2240 4.5309 -1.8847 37 1 2.8248 4.3953 -2.3659 38 1 3.5253 5.7447 -3.2964 39 1 1.5626 6.0434 -5.2640 40 1 1.4521 5.1681 -0.1304 41 1 1.4188 6.9305 0.1343 42 1 3.9038 5.5649 2.6071 43 1 2.3429 6.4082 2.4609 44 1 2.4613 4.6790 2.0571 45 1 2.0745 -3.3214 0.0182 46 1 0.7582 -2.5145 0.9036 47 1 0.7582 -2.5238 -0.8764 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942168339.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:10 Heat of formation + Delta-G solvation = -38.340144 kcal Electronic energy + Delta-G solvation = -30047.616525 eV Core-core repulsion = 26037.218900 eV Total energy + Delta-G solvation = -4010.397625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.87836 -41.06913 -39.28775 -38.90011 -36.58624 -35.95891 -34.26264 -33.73443 -32.87522 -31.75967 -29.96559 -27.99148 -27.38478 -26.89317 -25.60041 -24.59703 -23.58207 -22.75900 -21.96105 -20.21520 -19.83014 -19.50143 -18.66057 -18.00317 -17.37870 -17.06933 -16.86291 -16.57793 -16.08483 -15.68563 -15.39840 -15.26408 -15.05168 -14.92957 -14.74524 -14.58067 -14.23305 -14.07096 -13.85643 -13.78500 -13.52443 -13.14613 -12.96887 -12.79331 -12.72601 -12.70191 -12.52969 -12.39305 -12.36812 -12.34571 -12.13968 -11.93820 -11.66284 -11.47340 -11.33679 -11.10772 -10.52575 -10.49996 -10.01136 -9.07501 -8.65558 -7.84342 -5.29595 -0.95144 0.50663 1.26262 1.46988 1.49812 1.57025 1.59791 2.20566 2.53056 2.57799 2.95295 3.03056 3.30587 3.41640 3.67178 3.74093 3.79642 3.96393 4.07618 4.13914 4.40717 4.53696 4.61483 4.64709 4.66792 4.70748 4.78096 4.82718 4.89052 4.94743 4.98732 5.02463 5.08200 5.10766 5.19307 5.21537 5.26907 5.30739 5.42949 5.50660 5.51458 5.59172 5.67147 5.73655 6.36062 6.40455 6.55035 6.67251 7.16014 7.22428 7.87507 8.40387 9.21935 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013528 B = 0.003473 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.269563 B = 8059.494981 C = 8757.637974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.051 4.051 3 N -0.347 5.347 4 C -0.063 4.063 5 C 0.576 3.424 6 O -0.564 6.564 7 N -0.686 5.686 8 C 0.164 3.836 9 H 0.076 0.924 10 C -0.144 4.144 11 C 0.191 3.809 12 N -0.606 5.606 13 C -0.258 4.258 14 H 0.072 0.928 15 C -0.051 4.051 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.264 1.264 19 H -0.296 1.296 20 H -0.291 1.291 21 C 0.151 3.849 22 C -0.105 4.105 23 H 0.083 0.917 24 C -0.133 4.133 25 C 0.492 3.508 26 O -0.539 6.539 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.200 3.800 30 C -0.129 4.129 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.112 0.888 34 H 0.410 0.590 35 H 0.067 0.933 36 H 0.042 0.958 37 H -0.005 1.005 38 H 0.048 0.952 39 H 0.247 0.753 40 H 0.019 0.981 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.103 0.897 46 H 0.131 0.869 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.274 -19.924 13.239 24.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.182 4.182 3 N -0.065 5.065 4 C -0.224 4.224 5 C 0.362 3.638 6 O -0.442 6.442 7 N -0.338 5.338 8 C 0.060 3.940 9 H 0.094 0.906 10 C -0.184 4.184 11 C 0.065 3.935 12 N -0.329 5.329 13 C -0.389 4.389 14 H 0.089 0.911 15 C -0.246 4.246 16 N -0.581 5.581 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.223 1.223 20 H -0.218 1.218 21 C 0.025 3.975 22 C -0.126 4.126 23 H 0.101 0.899 24 C -0.190 4.190 25 C 0.286 3.714 26 O -0.417 6.417 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.081 3.919 30 C -0.186 4.186 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.131 0.869 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.013 0.987 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.122 0.878 46 H 0.149 0.851 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.202 -19.079 13.097 23.719 hybrid contribution 0.542 -0.163 -1.220 1.345 sum -4.660 -19.242 11.876 23.088 Atomic orbital electron populations 1.20704 0.84137 1.04856 1.04456 1.20966 0.99754 0.85326 1.12136 1.67440 1.07647 1.32115 0.99269 1.23249 0.89540 0.93123 1.16511 1.17462 0.86240 0.83399 0.76744 1.90798 1.14220 1.87433 1.51784 1.45790 1.10916 1.04442 1.72677 1.20859 0.95291 0.82251 0.95596 0.90604 1.22413 0.98884 1.00270 0.96855 1.20349 0.87277 0.90868 0.94990 1.44269 1.50172 1.30717 1.07719 1.19574 1.35479 0.93246 0.90559 0.91066 1.25773 1.00923 0.98853 0.99067 1.70210 1.55191 1.23645 1.09068 0.85243 0.76600 0.80194 0.78623 1.18835 1.22266 1.21850 1.21068 0.94067 0.98548 0.83776 1.21808 0.97264 0.97595 0.95884 0.89862 1.21689 1.01898 1.01813 0.93643 1.19003 0.87853 0.85053 0.79451 1.91006 1.13421 1.86162 1.51074 1.43695 1.07289 1.11411 1.57379 0.71733 1.22502 0.82554 1.00898 0.85917 1.21600 1.00881 0.88421 1.07695 0.88937 0.92041 0.86928 0.75240 0.91420 0.93962 0.98687 0.93347 0.94347 0.96363 0.91797 0.92192 0.90808 0.92876 0.87842 0.85076 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.65 71.24 0.69 -0.19 16 2 C -0.05 -0.92 6.70 42.04 0.28 -0.64 16 3 N -0.35 -9.91 9.57 -169.24 -1.62 -11.53 16 4 C -0.06 -2.19 6.96 43.71 0.30 -1.88 16 5 C 0.58 23.83 7.77 86.68 0.67 24.50 16 6 O -0.56 -27.38 15.17 15.54 0.24 -27.14 16 7 N -0.69 -26.28 3.59 -445.58 -1.60 -27.88 16 8 C 0.16 6.34 2.21 45.02 0.10 6.44 16 9 H 0.08 2.94 7.58 -2.39 -0.02 2.93 16 10 C -0.14 -6.42 5.77 30.67 0.18 -6.24 16 11 C 0.19 9.92 5.05 86.36 0.44 10.36 16 12 N -0.61 -30.74 2.99 -699.08 -2.09 -32.83 16 13 C -0.26 -14.26 9.59 84.03 0.81 -13.46 16 14 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 15 C -0.05 -2.89 4.91 84.86 0.42 -2.47 16 16 N -0.93 -56.59 11.19 21.65 0.24 -56.34 16 17 Si 0.96 45.54 29.59 68.60 2.03 47.57 16 18 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 21 C 0.15 6.11 5.50 86.36 0.48 6.58 16 22 C -0.11 -3.59 2.67 -10.71 -0.03 -3.62 16 23 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 24 C -0.13 -3.55 9.06 71.98 0.65 -2.90 16 25 C 0.49 15.57 7.93 86.39 0.68 16.26 16 26 O -0.54 -21.98 16.40 14.71 0.24 -21.74 16 27 N -0.56 -9.54 5.29 -301.76 -1.60 -11.13 16 28 H 0.44 4.22 8.64 -92.71 -0.80 3.42 16 29 C 0.20 2.27 6.78 41.61 0.28 2.56 16 30 C -0.13 0.21 8.83 71.23 0.63 0.84 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 0.29 6.43 -2.39 -0.02 0.27 16 34 H 0.41 15.27 6.09 -92.71 -0.56 14.70 16 35 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.00 -0.28 7.74 -2.39 -0.02 -0.29 16 38 H 0.05 2.86 6.04 -2.39 -0.01 2.84 16 39 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 40 H 0.02 0.75 6.64 -2.39 -0.02 0.73 16 41 H 0.06 2.48 7.93 -2.38 -0.02 2.46 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.42 7.54 -2.39 -0.02 1.40 16 45 H 0.10 -0.53 7.90 -2.38 -0.02 -0.55 16 46 H 0.13 -0.70 8.09 -2.39 -0.02 -0.72 16 47 H 0.13 -0.54 7.36 -2.39 -0.02 -0.56 16 Total: -1.00 -87.77 375.64 2.07 -85.71 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -0.35 Total: 19.21 kcal Atomic # 6 Polarization: 29.55 SS G_CDS: 6.58 Total: 36.13 kcal Atomic # 7 Polarization: -133.06 SS G_CDS: -6.67 Total: -139.73 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: 0.48 Total: -48.89 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -87.77 2.07 -85.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942168339.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.365 kcal (2) G-P(sol) polarization free energy of solvation -87.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds