Wall clock time and date at job start Tue Mar 31 2020 17:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32167 * 119.13735 * 2 1 4 4 C 1.32362 * 120.60399 * 180.02562 * 3 2 1 5 5 C 1.47504 * 120.51316 * 180.02562 * 4 3 2 6 6 O 1.21597 * 119.99924 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99750 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99989 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46079 * 325.02360 * 8 7 5 10 10 C 1.53041 * 109.45773 * 84.99668 * 8 7 5 11 11 C 1.53197 * 109.31051 * 181.38875 * 10 8 7 12 12 N 1.46930 * 108.77219 * 305.36397 * 11 10 8 13 13 C 1.36933 * 120.62855 * 233.63207 * 12 11 10 14 14 H 1.08004 * 120.00385 * 150.15355 * 13 12 11 15 15 C 1.38818 * 120.00237 * 330.15647 * 13 12 11 16 16 N 1.31623 * 119.99671 * 344.49608 * 15 13 12 17 17 Si 1.86794 * 120.00266 * 164.49461 * 15 13 12 18 18 H 1.48502 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47455 * 119.99983 * 17 15 13 20 20 H 1.48500 * 109.47150 * 240.00354 * 17 15 13 21 21 C 1.46926 * 118.74104 * 53.60886 * 12 11 10 22 22 H 1.08996 * 109.58259 * 66.17611 * 21 12 11 23 23 C 1.52996 * 109.58577 * 186.45948 * 21 12 11 24 24 C 1.53034 * 109.46074 * 205.06562 * 8 7 5 25 25 C 1.46678 * 118.97994 * 359.97438 * 4 3 2 26 26 O 1.21858 * 120.78672 * 180.02562 * 25 4 3 27 27 N 1.35156 * 118.43388 * 0.27362 * 25 4 3 28 28 H 0.96996 * 120.37471 * 179.70346 * 27 25 4 29 29 C 1.34904 * 119.26005 * 359.48247 * 27 25 4 30 30 C 1.50691 * 119.49813 * 180.25331 * 29 27 25 31 31 H 1.08992 * 109.47475 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46825 * 120.00550 * 1 2 3 33 33 H 1.09000 * 109.47112 * 239.99796 * 1 2 3 34 34 H 0.97004 * 119.99607 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.49900 * 301.33222 * 10 8 7 36 36 H 1.08998 * 109.50054 * 61.43487 * 10 8 7 37 37 H 1.08994 * 109.58965 * 65.14717 * 11 10 8 38 38 H 1.09004 * 109.58405 * 185.58158 * 11 10 8 39 39 H 0.97002 * 119.99490 * 180.02562 * 16 15 13 40 40 H 1.09008 * 109.47061 * 60.00453 * 23 21 12 41 41 H 1.09000 * 109.46804 * 179.97438 * 23 21 12 42 42 H 1.08996 * 109.47532 * 299.99850 * 23 21 12 43 43 H 1.09002 * 109.49910 * 298.56401 * 24 8 7 44 44 H 1.08998 * 109.50158 * 58.65946 * 24 8 7 45 45 H 1.09005 * 109.47084 * 270.24839 * 30 29 27 46 46 H 1.09003 * 109.47499 * 30.25443 * 30 29 27 47 47 H 1.09002 * 109.47053 * 150.25416 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1883 -0.0005 5 6 4.1899 2.4778 0.0001 6 8 5.4057 2.4980 0.0001 7 7 3.4966 3.6336 0.0006 8 6 4.2079 4.9144 0.0017 9 1 5.1202 4.8226 0.5911 10 6 4.5659 5.2999 -1.4354 11 6 5.3397 6.6221 -1.4274 12 7 4.5456 7.6304 -0.7120 13 6 4.2522 8.8323 -1.2989 14 1 3.3396 9.3499 -1.0426 15 6 5.1276 9.3854 -2.2234 16 7 6.3600 8.9324 -2.3156 17 14 4.5567 10.7726 -3.3365 18 1 3.1386 11.0960 -3.0370 19 1 5.3987 11.9733 -3.1027 20 1 4.6787 10.3510 -4.7551 21 6 4.0719 7.3243 0.6447 22 1 4.9240 7.2427 1.3194 23 6 3.1410 8.4388 1.1265 24 6 3.3125 5.9942 0.6134 25 6 4.2170 -0.0762 -0.0005 26 8 5.4356 -0.0834 -0.0005 27 7 3.5185 -1.2333 -0.0056 28 1 3.9814 -2.0856 -0.0101 29 6 2.1702 -1.1895 0.0000 30 6 1.3861 -2.4764 0.0001 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 -0.3633 -0.5139 0.8900 34 1 2.5267 3.6174 0.0002 35 1 5.1844 4.5193 -1.8782 36 1 3.6528 5.4163 -2.0192 37 1 6.2951 6.4833 -0.9215 38 1 5.5108 6.9515 -2.4523 39 1 6.9718 9.3192 -2.9613 40 1 2.2871 8.5153 0.4533 41 1 2.7904 8.2096 2.1328 42 1 3.6818 9.3850 1.1365 43 1 2.4112 6.1041 0.0104 44 1 3.0387 5.7077 1.6288 45 1 1.1965 -2.7865 -1.0275 46 1 1.9571 -3.2499 0.5137 47 1 0.4372 -2.3236 0.5143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947441950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:21 Heat of formation + Delta-G solvation = -12.522728 kcal Electronic energy + Delta-G solvation = -29174.654953 eV Core-core repulsion = 25165.376855 eV Total energy + Delta-G solvation = -4009.278098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.02791 -39.43745 -38.21266 -37.48609 -35.72555 -34.42500 -33.48428 -32.29916 -31.22269 -29.82873 -29.16805 -27.12157 -26.25170 -24.98861 -24.78717 -23.42321 -21.90855 -21.13903 -20.06768 -19.38794 -18.91460 -18.50614 -17.00022 -16.54173 -16.26321 -16.08165 -15.48361 -15.00941 -14.64089 -14.45438 -14.30119 -14.02873 -13.83654 -13.64120 -13.57180 -13.48198 -13.31516 -13.12876 -12.72357 -12.60649 -12.43098 -12.16184 -11.64150 -11.51981 -11.50298 -11.13043 -11.03051 -10.84151 -10.82186 -10.59179 -10.22705 -10.21327 -9.99983 -9.94718 -9.64172 -9.58699 -9.24275 -8.61516 -8.37804 -8.25480 -6.55301 -5.69779 -3.13822 -0.16171 1.36688 2.06874 2.63926 3.24566 3.42173 3.49740 3.51527 3.58681 3.61226 3.89245 3.97970 4.26786 4.55452 4.64726 4.78416 4.87565 5.05486 5.15120 5.19782 5.36197 5.45770 5.47998 5.52914 5.69262 5.69970 5.88491 5.97236 6.03120 6.10384 6.25351 6.35968 6.40067 6.51245 6.54585 6.61874 6.74672 6.90277 7.00210 7.11504 7.18440 7.19178 7.47236 7.48341 7.77580 7.86809 7.90128 8.49973 8.55115 9.30066 9.93895 10.51728 11.38903 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002568 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.624287 B =10898.734433 C =11295.203119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.031 4.031 3 N -0.353 5.353 4 C 0.016 3.984 5 C 0.575 3.425 6 O -0.506 6.506 7 N -0.704 5.704 8 C 0.151 3.849 9 H 0.083 0.917 10 C -0.147 4.147 11 C 0.176 3.824 12 N -0.588 5.588 13 C -0.249 4.249 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.278 1.278 19 H -0.291 1.291 20 H -0.290 1.290 21 C 0.171 3.829 22 H 0.027 0.973 23 C -0.135 4.135 24 C -0.133 4.133 25 C 0.495 3.505 26 O -0.480 6.480 27 N -0.588 5.588 28 H 0.420 0.580 29 C 0.151 3.849 30 C -0.131 4.131 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.403 0.597 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.021 0.979 38 H 0.088 0.912 39 H 0.252 0.748 40 H 0.053 0.947 41 H 0.038 0.962 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.621 -24.346 6.111 29.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 N -0.070 5.070 4 C -0.153 4.153 5 C 0.357 3.643 6 O -0.379 6.379 7 N -0.355 5.355 8 C 0.048 3.952 9 H 0.101 0.899 10 C -0.187 4.187 11 C 0.049 3.951 12 N -0.311 5.311 13 C -0.379 4.379 14 H 0.088 0.912 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.730 3.270 18 H -0.203 1.203 19 H -0.218 1.218 20 H -0.217 1.217 21 C 0.064 3.936 22 H 0.045 0.955 23 C -0.192 4.192 24 C -0.173 4.173 25 C 0.286 3.714 26 O -0.350 6.350 27 N -0.223 5.223 28 H 0.261 0.739 29 C 0.035 3.965 30 C -0.188 4.188 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.116 0.884 46 H 0.100 0.900 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.360 -23.436 6.009 28.135 hybrid contribution -0.061 -0.644 -0.705 0.956 sum -14.421 -24.080 5.305 28.565 Atomic orbital electron populations 1.20524 0.86949 1.04562 1.02165 1.20127 0.97889 0.85603 1.12063 1.67560 1.08475 1.29505 1.01495 1.24107 0.88810 0.94171 1.08245 1.17062 0.86672 0.82152 0.78391 1.90908 1.12286 1.86389 1.48330 1.46097 1.10586 1.05295 1.73571 1.21101 0.95575 0.80181 0.98334 0.89896 1.22583 1.01118 1.00365 0.94678 1.20738 0.90954 0.84157 0.99220 1.44176 1.62061 1.14505 1.10376 1.19198 1.01567 0.97097 1.20007 0.91245 1.25118 0.94695 0.98152 1.01739 1.70042 1.03672 1.44040 1.36826 0.86270 0.78049 0.81931 0.80794 1.20302 1.21834 1.21705 1.20360 0.94051 0.90962 0.88266 0.95535 1.21786 0.99562 0.99590 0.98288 1.22372 0.99162 0.96462 0.99274 1.19127 0.88483 0.83965 0.79807 1.91077 1.11389 1.85193 1.47361 1.43755 1.06374 1.12010 1.60197 0.73946 1.21518 0.83544 0.98996 0.92426 1.21229 1.00930 0.91784 1.04879 0.89864 0.90861 0.90831 0.76251 0.92812 0.92584 0.96072 0.89398 0.93752 0.92798 0.94327 0.91871 0.91702 0.92618 0.88391 0.89959 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 8.83 36.01 0.32 -0.06 16 2 C -0.03 -0.24 6.70 -83.18 -0.56 -0.80 16 3 N -0.35 -4.09 9.55 -4.84 -0.05 -4.13 16 4 C 0.02 0.23 6.96 -80.46 -0.56 -0.33 16 5 C 0.57 10.31 7.77 -12.48 -0.10 10.22 16 6 O -0.51 -11.24 15.17 -15.19 -0.23 -11.47 16 7 N -0.70 -11.48 5.07 -54.82 -0.28 -11.76 16 8 C 0.15 2.84 2.42 -67.89 -0.16 2.67 16 9 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 10 C -0.15 -3.10 5.65 -26.61 -0.15 -3.25 16 11 C 0.18 4.40 5.28 -3.71 -0.02 4.38 16 12 N -0.59 -14.74 2.99 -164.77 -0.49 -15.23 16 13 C -0.25 -6.74 8.57 -15.06 -0.13 -6.87 16 14 H 0.07 1.83 6.24 -52.48 -0.33 1.50 16 15 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 16 N -0.90 -26.70 11.23 55.49 0.62 -26.08 16 17 Si 0.90 21.91 29.58 -169.99 -5.03 16.88 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C 0.17 3.58 3.49 -67.60 -0.24 3.35 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 C -0.13 -2.53 7.96 37.16 0.30 -2.23 16 24 C -0.13 -2.33 4.85 -26.61 -0.13 -2.46 16 25 C 0.49 6.92 7.93 -12.68 -0.10 6.82 16 26 O -0.48 -8.76 16.40 -15.43 -0.25 -9.01 16 27 N -0.59 -4.75 5.29 -9.45 -0.05 -4.80 16 28 H 0.42 2.13 8.81 -40.82 -0.36 1.77 16 29 C 0.15 0.89 6.78 -81.98 -0.56 0.33 16 30 C -0.13 -0.14 9.59 36.00 0.35 0.20 16 31 H 0.08 0.46 8.10 -51.93 -0.42 0.03 16 32 H 0.07 0.20 8.08 -51.93 -0.42 -0.22 16 33 H 0.07 0.18 7.36 -51.93 -0.38 -0.20 16 34 H 0.40 5.60 7.97 -40.82 -0.33 5.28 16 35 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 2.44 6.15 -51.93 -0.32 2.12 16 39 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.05 1.01 7.43 -51.92 -0.39 0.62 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.28 7.63 -51.93 -0.40 0.89 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 46 H 0.08 -0.01 8.14 -51.93 -0.42 -0.44 16 47 H 0.10 -0.02 6.44 -51.93 -0.33 -0.35 16 LS Contribution 377.66 15.07 5.69 5.69 Total: -1.00 -36.84 377.66 -8.89 -45.74 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.00 Total: 2.26 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -1.83 Total: 11.92 kcal Atomic # 7 Polarization: -61.77 SS G_CDS: -0.24 Total: -62.01 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.48 Total: -20.48 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.84 -8.89 -45.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947441950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.212 kcal (2) G-P(sol) polarization free energy of solvation -36.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds