Wall clock time and date at job start Tue Mar 31 2020 17:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32167 * 119.13735 * 2 1 4 4 C 1.32362 * 120.60399 * 180.02562 * 3 2 1 5 5 C 1.47504 * 120.51316 * 180.02562 * 4 3 2 6 6 O 1.21597 * 119.99924 * 179.97438 * 5 4 3 7 7 N 1.34777 * 119.99750 * 359.97438 * 5 4 3 8 8 C 1.46499 * 119.99989 * 179.97438 * 7 5 4 9 9 H 1.09000 * 109.46079 * 325.02360 * 8 7 5 10 10 C 1.53041 * 109.45773 * 84.99668 * 8 7 5 11 11 C 1.53197 * 109.31051 * 181.38875 * 10 8 7 12 12 N 1.46930 * 108.77219 * 305.36397 * 11 10 8 13 13 C 1.36933 * 120.62855 * 233.63207 * 12 11 10 14 14 H 1.08004 * 120.00385 * 150.15355 * 13 12 11 15 15 C 1.38818 * 120.00237 * 330.15647 * 13 12 11 16 16 N 1.31623 * 119.99671 * 344.49608 * 15 13 12 17 17 Si 1.86794 * 120.00266 * 164.49461 * 15 13 12 18 18 H 1.48502 * 109.47264 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47455 * 119.99983 * 17 15 13 20 20 H 1.48500 * 109.47150 * 240.00354 * 17 15 13 21 21 C 1.46926 * 118.74104 * 53.60886 * 12 11 10 22 22 H 1.08996 * 109.58259 * 66.17611 * 21 12 11 23 23 C 1.52996 * 109.58577 * 186.45948 * 21 12 11 24 24 C 1.53034 * 109.46074 * 205.06562 * 8 7 5 25 25 C 1.46678 * 118.97994 * 359.97438 * 4 3 2 26 26 O 1.21858 * 120.78672 * 180.02562 * 25 4 3 27 27 N 1.35156 * 118.43388 * 0.27362 * 25 4 3 28 28 H 0.96996 * 120.37471 * 179.70346 * 27 25 4 29 29 C 1.34904 * 119.26005 * 359.48247 * 27 25 4 30 30 C 1.50691 * 119.49813 * 180.25331 * 29 27 25 31 31 H 1.08992 * 109.47475 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.46825 * 120.00550 * 1 2 3 33 33 H 1.09000 * 109.47112 * 239.99796 * 1 2 3 34 34 H 0.97004 * 119.99607 * 359.97438 * 7 5 4 35 35 H 1.08998 * 109.49900 * 301.33222 * 10 8 7 36 36 H 1.08998 * 109.50054 * 61.43487 * 10 8 7 37 37 H 1.08994 * 109.58965 * 65.14717 * 11 10 8 38 38 H 1.09004 * 109.58405 * 185.58158 * 11 10 8 39 39 H 0.97002 * 119.99490 * 180.02562 * 16 15 13 40 40 H 1.09008 * 109.47061 * 60.00453 * 23 21 12 41 41 H 1.09000 * 109.46804 * 179.97438 * 23 21 12 42 42 H 1.08996 * 109.47532 * 299.99850 * 23 21 12 43 43 H 1.09002 * 109.49910 * 298.56401 * 24 8 7 44 44 H 1.08998 * 109.50158 * 58.65946 * 24 8 7 45 45 H 1.09005 * 109.47084 * 270.24839 * 30 29 27 46 46 H 1.09003 * 109.47499 * 30.25443 * 30 29 27 47 47 H 1.09002 * 109.47053 * 150.25416 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1883 -0.0005 5 6 4.1899 2.4778 0.0001 6 8 5.4057 2.4980 0.0001 7 7 3.4966 3.6336 0.0006 8 6 4.2079 4.9144 0.0017 9 1 5.1202 4.8226 0.5911 10 6 4.5659 5.2999 -1.4354 11 6 5.3397 6.6221 -1.4274 12 7 4.5456 7.6304 -0.7120 13 6 4.2522 8.8323 -1.2989 14 1 3.3396 9.3499 -1.0426 15 6 5.1276 9.3854 -2.2234 16 7 6.3600 8.9324 -2.3156 17 14 4.5567 10.7726 -3.3365 18 1 3.1386 11.0960 -3.0370 19 1 5.3987 11.9733 -3.1027 20 1 4.6787 10.3510 -4.7551 21 6 4.0719 7.3243 0.6447 22 1 4.9240 7.2427 1.3194 23 6 3.1410 8.4388 1.1265 24 6 3.3125 5.9942 0.6134 25 6 4.2170 -0.0762 -0.0005 26 8 5.4356 -0.0834 -0.0005 27 7 3.5185 -1.2333 -0.0056 28 1 3.9814 -2.0856 -0.0101 29 6 2.1702 -1.1895 0.0000 30 6 1.3861 -2.4764 0.0001 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 -0.3633 -0.5139 0.8900 34 1 2.5267 3.6174 0.0002 35 1 5.1844 4.5193 -1.8782 36 1 3.6528 5.4163 -2.0192 37 1 6.2951 6.4833 -0.9215 38 1 5.5108 6.9515 -2.4523 39 1 6.9718 9.3192 -2.9613 40 1 2.2871 8.5153 0.4533 41 1 2.7904 8.2096 2.1328 42 1 3.6818 9.3850 1.1365 43 1 2.4112 6.1041 0.0104 44 1 3.0387 5.7077 1.6288 45 1 1.1965 -2.7865 -1.0275 46 1 1.9571 -3.2499 0.5137 47 1 0.4372 -2.3236 0.5143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947441950.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:20 Heat of formation + Delta-G solvation = -40.848274 kcal Electronic energy + Delta-G solvation = -29175.883241 eV Core-core repulsion = 25165.376855 eV Total energy + Delta-G solvation = -4010.506386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.88233 -40.84942 -39.31762 -39.02466 -36.59470 -36.07101 -34.29940 -34.03534 -32.91352 -31.34699 -29.93524 -28.15987 -27.70949 -26.62949 -25.58808 -24.59491 -23.59852 -22.50839 -21.53184 -21.03754 -19.86122 -19.50299 -18.34440 -17.90279 -17.38266 -17.27925 -16.97108 -16.71439 -15.90616 -15.71640 -15.58521 -15.18555 -15.04532 -14.93387 -14.84952 -14.54926 -14.34974 -14.07227 -13.83595 -13.75331 -13.32435 -12.96972 -12.80492 -12.73194 -12.71797 -12.66708 -12.60180 -12.41900 -12.37818 -12.31998 -12.04574 -11.85992 -11.71374 -11.50170 -11.46476 -11.15439 -10.55392 -10.53309 -10.05727 -9.08506 -8.63481 -7.82064 -5.29359 -0.97439 0.50672 1.23830 1.47873 1.49393 1.54688 1.60064 2.12824 2.54133 2.55078 2.92616 3.01000 3.34254 3.41811 3.59855 3.74911 3.84323 3.95560 4.06136 4.27535 4.38827 4.55884 4.62032 4.65718 4.69127 4.73857 4.75682 4.83159 4.92029 4.96752 4.97111 5.07544 5.07957 5.10246 5.16417 5.22546 5.25866 5.38404 5.48097 5.53941 5.55246 5.57257 5.70509 5.74854 6.33173 6.44726 6.54992 6.66094 7.17855 7.22330 7.89485 8.44050 9.25924 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.020454 B = 0.002568 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.624287 B =10898.734433 C =11295.203119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.049 4.049 3 N -0.337 5.337 4 C -0.063 4.063 5 C 0.574 3.426 6 O -0.567 6.567 7 N -0.692 5.692 8 C 0.161 3.839 9 H 0.054 0.946 10 C -0.130 4.130 11 C 0.186 3.814 12 N -0.602 5.602 13 C -0.246 4.246 14 H 0.083 0.917 15 C -0.060 4.060 16 N -0.943 5.943 17 Si 0.966 3.034 18 H -0.259 1.259 19 H -0.296 1.296 20 H -0.296 1.296 21 C 0.159 3.841 22 H 0.010 0.990 23 C -0.125 4.125 24 C -0.115 4.115 25 C 0.489 3.511 26 O -0.543 6.543 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.201 3.799 30 C -0.133 4.133 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.417 0.583 35 H 0.038 0.962 36 H 0.064 0.936 37 H -0.014 1.014 38 H 0.055 0.945 39 H 0.246 0.754 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.126 0.874 46 H 0.105 0.895 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.187 -27.496 6.975 35.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.180 4.180 3 N -0.055 5.055 4 C -0.224 4.224 5 C 0.360 3.640 6 O -0.444 6.444 7 N -0.343 5.343 8 C 0.057 3.943 9 H 0.072 0.928 10 C -0.170 4.170 11 C 0.059 3.941 12 N -0.326 5.326 13 C -0.376 4.376 14 H 0.100 0.900 15 C -0.254 4.254 16 N -0.590 5.590 17 Si 0.795 3.205 18 H -0.183 1.183 19 H -0.223 1.223 20 H -0.223 1.223 21 C 0.053 3.947 22 H 0.028 0.972 23 C -0.182 4.182 24 C -0.155 4.155 25 C 0.284 3.716 26 O -0.420 6.420 27 N -0.199 5.199 28 H 0.282 0.718 29 C 0.082 3.918 30 C -0.190 4.190 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.121 0.879 34 H 0.254 0.746 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.004 0.996 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.144 0.856 46 H 0.124 0.876 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.973 -26.575 6.902 33.953 hybrid contribution 1.396 -0.033 -0.911 1.667 sum -18.577 -26.608 5.990 33.000 Atomic orbital electron populations 1.20715 0.83639 1.04833 1.04852 1.21034 0.99892 0.85139 1.11932 1.67453 1.07060 1.31835 0.99173 1.23084 0.89678 0.92545 1.17070 1.17573 0.86211 0.83591 0.76665 1.90856 1.14918 1.87444 1.51231 1.45769 1.10965 1.04079 1.73527 1.20747 0.95449 0.82083 0.96054 0.92753 1.22317 1.00384 0.97583 0.96749 1.20408 0.90481 0.86262 0.96938 1.44428 1.61882 1.14068 1.12220 1.19607 1.01526 0.97219 1.19279 0.89962 1.25945 0.94790 1.01024 1.03687 1.70229 1.05024 1.45939 1.37783 0.85213 0.78315 0.78692 0.78308 1.18277 1.22323 1.22290 1.20649 0.94439 0.93848 0.85777 0.97231 1.21697 0.98569 0.97415 1.00563 1.22177 0.98333 0.93592 1.01362 1.19091 0.87851 0.85208 0.79490 1.91033 1.13770 1.86156 1.51040 1.43709 1.07484 1.11416 1.57242 0.71831 1.22549 0.82411 1.01168 0.85688 1.21622 1.01350 0.88882 1.07141 0.91017 0.88237 0.87883 0.74561 0.94285 0.91740 0.99592 0.92645 0.94482 0.92415 0.90389 0.94006 0.90304 0.89258 0.85592 0.87624 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.28 8.83 71.24 0.63 0.35 16 2 C -0.05 -0.58 6.70 42.03 0.28 -0.30 16 3 N -0.34 -7.35 9.55 -169.24 -1.62 -8.96 16 4 C -0.06 -1.91 6.96 43.71 0.30 -1.61 16 5 C 0.57 22.13 7.77 86.69 0.67 22.81 16 6 O -0.57 -27.81 15.17 15.56 0.24 -27.57 16 7 N -0.69 -23.33 5.07 -445.61 -2.26 -25.58 16 8 C 0.16 6.32 2.42 45.02 0.11 6.43 16 9 H 0.05 2.46 7.58 -2.39 -0.02 2.44 16 10 C -0.13 -5.84 5.65 30.67 0.17 -5.66 16 11 C 0.19 10.01 5.28 86.36 0.46 10.46 16 12 N -0.60 -31.23 2.99 -675.22 -2.02 -33.25 16 13 C -0.25 -13.53 8.57 84.04 0.72 -12.81 16 14 H 0.08 4.26 6.24 -2.91 -0.02 4.24 16 15 C -0.06 -3.46 4.94 84.86 0.42 -3.04 16 16 N -0.94 -58.95 11.23 21.65 0.24 -58.71 16 17 Si 0.97 46.10 29.58 68.60 2.03 48.13 16 18 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 C 0.16 6.70 3.49 44.97 0.16 6.86 16 22 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 23 C -0.13 -4.48 7.96 71.98 0.57 -3.91 16 24 C -0.12 -3.94 4.85 30.67 0.15 -3.79 16 25 C 0.49 14.11 7.93 86.39 0.68 14.79 16 26 O -0.54 -21.47 16.40 14.72 0.24 -21.23 16 27 N -0.56 -7.78 5.29 -301.76 -1.60 -9.38 16 28 H 0.44 3.17 8.81 -92.71 -0.82 2.35 16 29 C 0.20 1.42 6.78 41.61 0.28 1.70 16 30 C -0.13 0.69 9.59 71.23 0.68 1.37 16 31 H 0.07 0.48 8.10 -2.39 -0.02 0.46 16 32 H 0.10 -0.12 8.08 -2.39 -0.02 -0.14 16 33 H 0.10 -0.21 7.36 -2.39 -0.02 -0.23 16 34 H 0.42 11.41 7.97 -92.71 -0.74 10.67 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 37 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 38 H 0.06 3.32 6.15 -2.39 -0.01 3.30 16 39 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.06 2.02 7.43 -2.38 -0.02 2.00 16 41 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.04 1.66 7.63 -2.39 -0.02 1.64 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.13 -1.00 8.14 -2.38 -0.02 -1.02 16 46 H 0.11 -0.83 8.14 -2.39 -0.02 -0.84 16 47 H 0.13 -1.14 6.44 -2.39 -0.02 -1.15 16 Total: -1.00 -92.49 377.66 1.02 -91.47 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -0.54 Total: 11.43 kcal Atomic # 6 Polarization: 27.36 SS G_CDS: 6.29 Total: 33.65 kcal Atomic # 7 Polarization: -128.64 SS G_CDS: -7.24 Total: -135.88 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: 0.48 Total: -48.80 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -92.49 1.02 -91.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947441950.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.624 kcal (2) G-P(sol) polarization free energy of solvation -92.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds