Wall clock time and date at job start Tue Mar 31 2020 17:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32173 * 119.14013 * 2 1 4 4 C 1.32362 * 120.60349 * 180.02562 * 3 2 1 5 5 C 1.47499 * 120.50785 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00356 * 179.97438 * 5 4 3 7 7 N 1.34783 * 120.00003 * 359.97438 * 5 4 3 8 8 C 1.46496 * 119.99919 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.46279 * 34.99868 * 8 7 5 10 10 C 1.53040 * 109.45889 * 275.02852 * 8 7 5 11 11 C 1.53164 * 109.32872 * 301.35714 * 10 8 7 12 12 N 1.46922 * 108.77188 * 305.35567 * 11 10 8 13 13 C 1.36936 * 120.63345 * 233.58547 * 12 11 10 14 14 H 1.08000 * 119.99951 * 150.18293 * 13 12 11 15 15 C 1.38812 * 119.99917 * 330.18520 * 13 12 11 16 16 N 1.31617 * 119.99903 * 344.48262 * 15 13 12 17 17 Si 1.86801 * 119.99818 * 164.48538 * 15 13 12 18 18 H 1.48497 * 109.46918 * 89.99799 * 17 15 13 19 19 H 1.48502 * 109.46907 * 209.99933 * 17 15 13 20 20 H 1.48501 * 109.46997 * 329.99787 * 17 15 13 21 21 C 1.46934 * 118.73468 * 53.60905 * 12 11 10 22 22 H 1.09001 * 109.58843 * 66.17913 * 21 12 11 23 23 C 1.53000 * 109.58348 * 186.60675 * 21 12 11 24 24 C 1.53045 * 109.46055 * 154.97751 * 8 7 5 25 25 C 1.46676 * 118.98266 * 359.97438 * 4 3 2 26 26 O 1.21859 * 120.78266 * 180.02562 * 25 4 3 27 27 N 1.35151 * 118.43341 * 359.77511 * 25 4 3 28 28 H 0.96994 * 120.37233 * 180.21766 * 27 25 4 29 29 C 1.34899 * 119.25997 * 0.46727 * 27 25 4 30 30 C 1.50701 * 119.50065 * 179.77121 * 29 27 25 31 31 H 1.09004 * 109.47053 * 269.97758 * 1 2 3 32 32 H 1.08997 * 109.47111 * 29.98112 * 1 2 3 33 33 H 1.08994 * 109.46585 * 149.98311 * 1 2 3 34 34 H 0.97000 * 119.99713 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.49932 * 61.30046 * 10 8 7 36 36 H 1.09007 * 109.49659 * 181.39643 * 10 8 7 37 37 H 1.09003 * 109.58909 * 185.56611 * 11 10 8 38 38 H 1.09005 * 109.70329 * 65.21390 * 11 10 8 39 39 H 0.97002 * 119.99958 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.46893 * 179.28787 * 23 21 12 41 41 H 1.09001 * 109.46694 * 299.28615 * 23 21 12 42 42 H 1.08997 * 109.47311 * 59.28546 * 23 21 12 43 43 H 1.09001 * 109.49873 * 178.60632 * 24 8 7 44 44 H 1.09004 * 109.49007 * 298.70102 * 24 8 7 45 45 H 1.08997 * 109.47273 * 269.73242 * 30 29 27 46 46 H 1.09001 * 109.47442 * 149.72765 * 30 29 27 47 47 H 1.09002 * 109.46670 * 29.72924 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0005 5 6 4.1899 2.4777 -0.0011 6 8 5.4057 2.4981 -0.0011 7 7 3.4966 3.6336 -0.0016 8 6 4.2079 4.9143 -0.0027 9 1 5.1199 4.8227 -0.5924 10 6 4.5665 5.2996 1.4343 11 6 3.2855 5.3937 2.2686 12 7 2.3586 6.3231 1.6085 13 6 1.8232 7.3800 2.2952 14 1 1.5639 8.2883 1.7718 15 6 1.6140 7.2838 3.6641 16 7 1.6348 6.1063 4.2519 17 14 1.3028 8.8255 4.6719 18 1 -0.1558 9.1000 4.7191 19 1 1.8140 8.6263 6.0519 20 1 2.0030 9.9758 4.0459 21 6 2.0165 6.0965 0.1976 22 1 1.4520 5.1689 0.1029 23 6 1.1776 7.2663 -0.3209 24 6 3.3121 5.9945 -0.6135 25 6 4.2171 -0.0763 -0.0005 26 8 5.4356 -0.0834 -0.0005 27 7 3.5186 -1.2333 0.0047 28 1 3.9815 -2.0856 0.0080 29 6 2.1703 -1.1895 0.0001 30 6 1.3860 -2.4764 0.0006 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3632 -0.8898 -0.5141 34 1 2.5268 3.6174 -0.0012 35 1 5.2234 4.5417 1.8610 36 1 5.0738 6.2644 1.4365 37 1 3.5251 5.7632 3.2657 38 1 2.8235 4.4094 2.3450 39 1 1.4889 6.0392 5.2085 40 1 0.9356 7.1024 -1.3710 41 1 0.2565 7.3371 0.2575 42 1 1.7431 8.1924 -0.2185 43 1 3.8312 6.9527 -0.5920 44 1 3.0760 5.7310 -1.6445 45 1 1.1963 -2.7866 -1.0269 46 1 0.4373 -2.3235 0.5151 47 1 1.9573 -3.2497 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947441951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:26 Heat of formation + Delta-G solvation = -9.174346 kcal Electronic energy + Delta-G solvation = -29972.282919 eV Core-core repulsion = 25963.150017 eV Total energy + Delta-G solvation = -4009.132901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.88330 -39.48754 -38.10084 -37.43509 -35.57608 -34.14589 -33.35689 -32.23364 -31.11944 -29.77918 -29.12661 -26.95528 -26.27245 -24.90201 -24.83130 -23.42372 -21.92964 -20.99212 -20.46562 -19.01631 -18.53970 -18.35771 -16.91359 -16.38584 -16.30361 -15.92235 -15.28715 -14.93946 -14.56966 -14.31929 -14.19890 -13.92765 -13.88782 -13.64562 -13.53494 -13.42978 -13.22783 -12.98879 -12.70155 -12.36366 -12.18134 -11.94338 -11.74980 -11.47918 -11.35644 -11.34189 -11.11302 -10.94494 -10.61380 -10.55885 -10.34594 -10.09099 -10.01670 -9.98695 -9.58417 -9.32002 -9.20418 -8.50647 -8.39112 -8.12393 -6.54660 -5.71214 -3.15145 -0.00313 1.52078 2.20889 2.77526 3.39767 3.40892 3.48300 3.50169 3.73644 3.76017 4.05850 4.12791 4.40935 4.54279 4.78779 4.95352 5.03775 5.19169 5.29376 5.40338 5.43111 5.45373 5.49175 5.67897 5.72075 5.77648 5.87200 6.09210 6.13005 6.17320 6.22108 6.34281 6.39210 6.47174 6.52915 6.66682 6.73017 6.88157 7.04510 7.12378 7.14542 7.35789 7.47564 7.61047 7.77564 7.88348 8.01636 8.53293 8.62704 9.28815 9.92812 10.50390 11.36875 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003386 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.750906 B = 8268.185868 C = 8856.891598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.025 4.025 3 N -0.349 5.349 4 C 0.016 3.984 5 C 0.578 3.422 6 O -0.517 6.517 7 N -0.692 5.692 8 C 0.154 3.846 9 H 0.074 0.926 10 C -0.154 4.154 11 C 0.176 3.824 12 N -0.586 5.586 13 C -0.249 4.249 14 H 0.069 0.931 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.898 3.102 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.167 3.833 22 H 0.023 0.977 23 C -0.136 4.136 24 C -0.138 4.138 25 C 0.496 3.504 26 O -0.485 6.485 27 N -0.587 5.587 28 H 0.419 0.581 29 C 0.147 3.853 30 C -0.130 4.130 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.409 0.591 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.019 0.981 39 H 0.252 0.748 40 H 0.037 0.963 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.103 0.897 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 -17.242 -11.070 20.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.151 4.151 3 N -0.066 5.066 4 C -0.153 4.153 5 C 0.361 3.639 6 O -0.391 6.391 7 N -0.345 5.345 8 C 0.050 3.950 9 H 0.092 0.908 10 C -0.194 4.194 11 C 0.051 3.949 12 N -0.310 5.310 13 C -0.379 4.379 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.546 5.546 17 Si 0.728 3.272 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.060 3.940 22 H 0.040 0.960 23 C -0.194 4.194 24 C -0.178 4.178 25 C 0.288 3.712 26 O -0.356 6.356 27 N -0.223 5.223 28 H 0.259 0.741 29 C 0.031 3.969 30 C -0.188 4.188 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.247 0.753 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.074 0.926 45 H 0.115 0.885 46 H 0.121 0.879 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.856 -16.427 -10.884 19.911 hybrid contribution -0.042 -0.552 0.767 0.945 sum -2.897 -16.979 -10.117 19.976 Atomic orbital electron populations 1.20571 0.86907 1.03655 1.03372 1.20167 0.97971 0.85546 1.11373 1.67564 1.08446 1.29525 1.01032 1.24048 0.88829 0.94086 1.08344 1.17023 0.86543 0.82233 0.78138 1.90856 1.12350 1.86573 1.49363 1.45934 1.11154 1.04736 1.72701 1.20944 0.94818 0.81386 0.97821 0.90768 1.22561 1.00958 1.00440 0.95474 1.20683 0.85944 0.92506 0.95803 1.44122 1.49980 1.31009 1.05888 1.19144 1.36336 0.92007 0.90390 0.91377 1.25078 1.00166 0.96054 0.98226 1.70031 1.53327 1.21472 1.09773 0.86369 0.77841 0.83223 0.79749 1.21530 1.21727 1.20542 1.20396 0.91620 0.95716 0.86219 0.95988 1.21796 1.00684 0.98741 0.98133 1.22365 0.98869 0.98227 0.98317 1.19112 0.88435 0.83965 0.79702 1.91050 1.11415 1.85277 1.47855 1.43709 1.06372 1.11902 1.60340 0.74066 1.21510 0.83505 0.98945 0.92912 1.21229 1.01026 0.91788 1.04718 0.90470 0.89926 0.90824 0.75333 0.92725 0.91699 0.89860 0.96294 0.93823 0.94350 0.92001 0.92721 0.90597 0.92557 0.88540 0.87875 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.62 9.25 36.01 0.33 -0.29 16 2 C -0.02 -0.25 6.70 -83.18 -0.56 -0.81 16 3 N -0.35 -4.98 9.57 -4.84 -0.05 -5.02 16 4 C 0.02 0.26 6.96 -80.46 -0.56 -0.30 16 5 C 0.58 11.17 7.77 -12.48 -0.10 11.07 16 6 O -0.52 -11.62 15.17 -15.20 -0.23 -11.85 16 7 N -0.69 -12.67 4.26 -54.82 -0.23 -12.91 16 8 C 0.15 2.88 2.78 -67.89 -0.19 2.69 16 9 H 0.07 1.38 7.58 -51.93 -0.39 0.99 16 10 C -0.15 -3.23 5.77 -26.63 -0.15 -3.39 16 11 C 0.18 4.30 5.02 -3.73 -0.02 4.28 16 12 N -0.59 -14.26 2.99 -164.79 -0.49 -14.76 16 13 C -0.25 -6.62 8.58 -15.06 -0.13 -6.75 16 14 H 0.07 1.76 6.23 -52.49 -0.33 1.44 16 15 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 16 N -0.90 -26.14 11.23 55.49 0.62 -25.52 16 17 Si 0.90 21.66 29.58 -169.99 -5.03 16.63 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.17 3.35 3.20 -67.60 -0.22 3.14 16 22 H 0.02 0.46 6.64 -51.93 -0.34 0.11 16 23 C -0.14 -2.49 7.95 37.16 0.30 -2.19 16 24 C -0.14 -2.40 5.07 -26.61 -0.13 -2.54 16 25 C 0.50 7.62 7.93 -12.69 -0.10 7.52 16 26 O -0.48 -9.28 16.40 -15.43 -0.25 -9.53 16 27 N -0.59 -5.62 5.29 -9.45 -0.05 -5.67 16 28 H 0.42 2.65 8.81 -40.82 -0.36 2.29 16 29 C 0.15 1.13 6.78 -81.98 -0.56 0.58 16 30 C -0.13 -0.35 9.18 36.01 0.33 -0.02 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.28 6.53 -51.93 -0.34 -0.06 16 34 H 0.41 7.32 6.23 -40.82 -0.25 7.06 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 37 H 0.08 2.30 6.15 -51.93 -0.32 1.98 16 38 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.22 7.67 -51.93 -0.40 0.82 16 42 H 0.05 1.02 7.40 -51.93 -0.38 0.63 16 43 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.10 0.19 6.55 -51.93 -0.34 -0.15 16 47 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -35.88 372.79 -8.73 -44.61 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.80 Total: 5.41 kcal Atomic # 6 Polarization: 14.83 SS G_CDS: -1.84 Total: 12.99 kcal Atomic # 7 Polarization: -63.68 SS G_CDS: -0.20 Total: -63.87 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.48 Total: -21.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.88 -8.73 -44.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947441951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.440 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds