Wall clock time and date at job start Tue Mar 31 2020 17:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32173 * 119.14013 * 2 1 4 4 C 1.32362 * 120.60349 * 180.02562 * 3 2 1 5 5 C 1.47499 * 120.50785 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00356 * 179.97438 * 5 4 3 7 7 N 1.34783 * 120.00003 * 359.97438 * 5 4 3 8 8 C 1.46496 * 119.99919 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.46279 * 34.99868 * 8 7 5 10 10 C 1.53040 * 109.45889 * 275.02852 * 8 7 5 11 11 C 1.53164 * 109.32872 * 301.35714 * 10 8 7 12 12 N 1.46922 * 108.77188 * 305.35567 * 11 10 8 13 13 C 1.36936 * 120.63345 * 233.58547 * 12 11 10 14 14 H 1.08000 * 119.99951 * 150.18293 * 13 12 11 15 15 C 1.38812 * 119.99917 * 330.18520 * 13 12 11 16 16 N 1.31617 * 119.99903 * 344.48262 * 15 13 12 17 17 Si 1.86801 * 119.99818 * 164.48538 * 15 13 12 18 18 H 1.48497 * 109.46918 * 89.99799 * 17 15 13 19 19 H 1.48502 * 109.46907 * 209.99933 * 17 15 13 20 20 H 1.48501 * 109.46997 * 329.99787 * 17 15 13 21 21 C 1.46934 * 118.73468 * 53.60905 * 12 11 10 22 22 H 1.09001 * 109.58843 * 66.17913 * 21 12 11 23 23 C 1.53000 * 109.58348 * 186.60675 * 21 12 11 24 24 C 1.53045 * 109.46055 * 154.97751 * 8 7 5 25 25 C 1.46676 * 118.98266 * 359.97438 * 4 3 2 26 26 O 1.21859 * 120.78266 * 180.02562 * 25 4 3 27 27 N 1.35151 * 118.43341 * 359.77511 * 25 4 3 28 28 H 0.96994 * 120.37233 * 180.21766 * 27 25 4 29 29 C 1.34899 * 119.25997 * 0.46727 * 27 25 4 30 30 C 1.50701 * 119.50065 * 179.77121 * 29 27 25 31 31 H 1.09004 * 109.47053 * 269.97758 * 1 2 3 32 32 H 1.08997 * 109.47111 * 29.98112 * 1 2 3 33 33 H 1.08994 * 109.46585 * 149.98311 * 1 2 3 34 34 H 0.97000 * 119.99713 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.49932 * 61.30046 * 10 8 7 36 36 H 1.09007 * 109.49659 * 181.39643 * 10 8 7 37 37 H 1.09003 * 109.58909 * 185.56611 * 11 10 8 38 38 H 1.09005 * 109.70329 * 65.21390 * 11 10 8 39 39 H 0.97002 * 119.99958 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.46893 * 179.28787 * 23 21 12 41 41 H 1.09001 * 109.46694 * 299.28615 * 23 21 12 42 42 H 1.08997 * 109.47311 * 59.28546 * 23 21 12 43 43 H 1.09001 * 109.49873 * 178.60632 * 24 8 7 44 44 H 1.09004 * 109.49007 * 298.70102 * 24 8 7 45 45 H 1.08997 * 109.47273 * 269.73242 * 30 29 27 46 46 H 1.09001 * 109.47442 * 149.72765 * 30 29 27 47 47 H 1.09002 * 109.46670 * 29.72924 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 -0.0005 5 6 4.1899 2.4777 -0.0011 6 8 5.4057 2.4981 -0.0011 7 7 3.4966 3.6336 -0.0016 8 6 4.2079 4.9143 -0.0027 9 1 5.1199 4.8227 -0.5924 10 6 4.5665 5.2996 1.4343 11 6 3.2855 5.3937 2.2686 12 7 2.3586 6.3231 1.6085 13 6 1.8232 7.3800 2.2952 14 1 1.5639 8.2883 1.7718 15 6 1.6140 7.2838 3.6641 16 7 1.6348 6.1063 4.2519 17 14 1.3028 8.8255 4.6719 18 1 -0.1558 9.1000 4.7191 19 1 1.8140 8.6263 6.0519 20 1 2.0030 9.9758 4.0459 21 6 2.0165 6.0965 0.1976 22 1 1.4520 5.1689 0.1029 23 6 1.1776 7.2663 -0.3209 24 6 3.3121 5.9945 -0.6135 25 6 4.2171 -0.0763 -0.0005 26 8 5.4356 -0.0834 -0.0005 27 7 3.5186 -1.2333 0.0047 28 1 3.9815 -2.0856 0.0080 29 6 2.1703 -1.1895 0.0001 30 6 1.3860 -2.4764 0.0006 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3632 -0.8898 -0.5141 34 1 2.5268 3.6174 -0.0012 35 1 5.2234 4.5417 1.8610 36 1 5.0738 6.2644 1.4365 37 1 3.5251 5.7632 3.2657 38 1 2.8235 4.4094 2.3450 39 1 1.4889 6.0392 5.2085 40 1 0.9356 7.1024 -1.3710 41 1 0.2565 7.3371 0.2575 42 1 1.7431 8.1924 -0.2185 43 1 3.8312 6.9527 -0.5920 44 1 3.0760 5.7310 -1.6445 45 1 1.1963 -2.7866 -1.0269 46 1 0.4373 -2.3235 0.5151 47 1 1.9573 -3.2497 0.5140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947441951.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:25 Heat of formation + Delta-G solvation = -35.694812 kcal Electronic energy + Delta-G solvation = -29973.432932 eV Core-core repulsion = 25963.150017 eV Total energy + Delta-G solvation = -4010.282915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.88295 -40.97554 -39.30620 -38.95176 -36.59052 -35.85621 -34.25176 -33.97629 -32.77811 -31.41367 -29.91030 -28.12708 -27.72456 -26.77171 -25.60549 -24.59639 -23.68622 -22.37061 -22.02297 -20.34832 -19.81074 -19.53044 -18.24662 -17.98114 -17.38139 -17.07583 -17.07476 -16.54344 -16.05918 -15.67297 -15.53349 -15.32071 -15.01685 -14.95533 -14.74300 -14.44217 -14.12938 -14.08958 -13.89685 -13.84432 -13.33095 -13.17906 -12.82542 -12.78244 -12.65568 -12.61658 -12.45678 -12.38794 -12.38153 -12.31053 -12.15640 -11.96798 -11.68639 -11.40159 -11.35329 -10.97740 -10.51485 -10.48031 -10.03981 -9.07989 -8.56452 -7.79398 -5.25493 -0.96185 0.49989 1.25337 1.47916 1.50574 1.55794 1.58950 2.19936 2.55444 2.56896 2.94492 3.02342 3.35986 3.41342 3.64015 3.73736 3.87711 4.00624 4.09152 4.21261 4.44481 4.56956 4.62708 4.65937 4.68384 4.70420 4.79951 4.87779 4.90561 4.95143 4.98705 5.05363 5.07206 5.12181 5.18732 5.21673 5.25172 5.41591 5.50302 5.55223 5.57327 5.60430 5.76068 5.77122 6.35223 6.47151 6.54399 6.66477 7.21344 7.21545 7.93894 8.47299 9.27186 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.014248 B = 0.003386 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.750906 B = 8268.185868 C = 8856.891598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.051 4.051 3 N -0.347 5.347 4 C -0.063 4.063 5 C 0.575 3.425 6 O -0.564 6.564 7 N -0.690 5.690 8 C 0.157 3.843 9 H 0.077 0.923 10 C -0.142 4.142 11 C 0.192 3.808 12 N -0.600 5.600 13 C -0.247 4.247 14 H 0.078 0.922 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.960 3.040 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.270 1.270 21 C 0.160 3.840 22 H 0.020 0.980 23 C -0.128 4.128 24 C -0.124 4.124 25 C 0.492 3.508 26 O -0.539 6.539 27 N -0.563 5.563 28 H 0.439 0.561 29 C 0.201 3.799 30 C -0.133 4.133 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.410 0.590 35 H 0.039 0.961 36 H 0.068 0.932 37 H 0.045 0.955 38 H -0.007 1.007 39 H 0.245 0.755 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 -19.412 -13.043 24.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.182 4.182 3 N -0.065 5.065 4 C -0.224 4.224 5 C 0.361 3.639 6 O -0.442 6.442 7 N -0.342 5.342 8 C 0.053 3.947 9 H 0.095 0.905 10 C -0.182 4.182 11 C 0.066 3.934 12 N -0.324 5.324 13 C -0.378 4.378 14 H 0.095 0.905 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.789 3.211 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.195 1.195 21 C 0.055 3.945 22 H 0.038 0.962 23 C -0.186 4.186 24 C -0.163 4.163 25 C 0.287 3.713 26 O -0.416 6.416 27 N -0.198 5.198 28 H 0.283 0.717 29 C 0.082 3.918 30 C -0.190 4.190 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.136 0.864 34 H 0.248 0.752 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.011 0.989 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.099 0.901 44 H 0.107 0.893 45 H 0.149 0.851 46 H 0.144 0.856 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.435 -18.565 -12.897 23.249 hybrid contribution 0.502 -0.214 1.333 1.440 sum -4.933 -18.779 -11.564 22.599 Atomic orbital electron populations 1.20727 0.84185 1.05277 1.04092 1.20976 0.99750 0.85345 1.12103 1.67443 1.07663 1.32118 0.99261 1.23251 0.89542 0.93133 1.16521 1.17477 0.86248 0.83435 0.76708 1.90796 1.14216 1.87453 1.51756 1.45850 1.10980 1.04556 1.72802 1.20872 0.95606 0.82288 0.95957 0.90455 1.22382 0.98856 1.00200 0.96785 1.20306 0.87315 0.90998 0.94767 1.44340 1.50027 1.30457 1.07563 1.19514 1.34682 0.92867 0.90712 0.90464 1.25808 1.01089 0.98456 0.99471 1.70201 1.55413 1.23446 1.09378 0.85382 0.77713 0.80289 0.77713 1.21051 1.22714 1.19512 1.20645 0.93317 0.96507 0.84074 0.96245 1.21722 0.99168 0.97576 1.00085 1.22244 0.96880 0.97852 0.99302 1.18990 0.87843 0.85035 0.79446 1.91005 1.13408 1.86151 1.51061 1.43644 1.07296 1.11425 1.57402 0.71696 1.22500 0.82571 1.00905 0.85805 1.21634 1.01212 0.88780 1.07350 0.90148 0.91242 0.86387 0.75217 0.94187 0.91333 0.93623 0.98883 0.94616 0.90472 0.93901 0.93003 0.90088 0.89265 0.85098 0.85625 0.87424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.91 9.25 71.24 0.66 -0.25 16 2 C -0.05 -0.93 6.70 42.03 0.28 -0.65 16 3 N -0.35 -10.00 9.57 -169.24 -1.62 -11.62 16 4 C -0.06 -2.21 6.96 43.71 0.30 -1.91 16 5 C 0.58 23.94 7.77 86.68 0.67 24.61 16 6 O -0.56 -27.45 15.17 15.55 0.24 -27.22 16 7 N -0.69 -26.56 4.26 -445.60 -1.90 -28.46 16 8 C 0.16 6.03 2.78 45.02 0.13 6.15 16 9 H 0.08 2.96 7.58 -2.39 -0.02 2.94 16 10 C -0.14 -6.28 5.77 30.66 0.18 -6.11 16 11 C 0.19 9.92 5.02 86.35 0.43 10.35 16 12 N -0.60 -29.83 2.99 -675.27 -2.02 -31.85 16 13 C -0.25 -13.32 8.58 84.03 0.72 -12.60 16 14 H 0.08 3.96 6.23 -2.91 -0.02 3.95 16 15 C -0.05 -3.01 4.94 84.86 0.42 -2.59 16 16 N -0.94 -56.70 11.23 21.65 0.24 -56.45 16 17 Si 0.96 45.43 29.58 68.60 2.03 47.46 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 C 0.16 6.34 3.20 44.97 0.14 6.49 16 22 H 0.02 0.81 6.64 -2.39 -0.02 0.79 16 23 C -0.13 -4.45 7.95 71.98 0.57 -3.88 16 24 C -0.12 -4.17 5.07 30.67 0.16 -4.01 16 25 C 0.49 15.63 7.93 86.39 0.68 16.32 16 26 O -0.54 -21.99 16.40 14.72 0.24 -21.75 16 27 N -0.56 -9.57 5.29 -301.76 -1.60 -11.16 16 28 H 0.44 4.22 8.81 -92.71 -0.82 3.40 16 29 C 0.20 2.32 6.78 41.61 0.28 2.60 16 30 C -0.13 0.19 9.18 71.24 0.65 0.84 16 31 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.12 0.19 6.53 -2.39 -0.02 0.18 16 34 H 0.41 15.32 6.23 -92.71 -0.58 14.75 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 37 H 0.05 2.68 6.15 -2.39 -0.01 2.67 16 38 H -0.01 -0.39 7.74 -2.38 -0.02 -0.40 16 39 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 40 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 42 H 0.05 1.82 7.40 -2.39 -0.02 1.80 16 43 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.13 -0.73 8.14 -2.39 -0.02 -0.75 16 46 H 0.13 -0.49 6.55 -2.39 -0.02 -0.50 16 47 H 0.11 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -87.60 372.79 1.53 -86.07 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -0.37 Total: 19.64 kcal Atomic # 6 Polarization: 29.07 SS G_CDS: 6.29 Total: 35.36 kcal Atomic # 7 Polarization: -132.66 SS G_CDS: -6.89 Total: -139.54 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: 0.48 Total: -48.97 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -87.60 1.53 -86.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947441951.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.371 kcal (2) G-P(sol) polarization free energy of solvation -87.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds