Wall clock time and date at job start Tue Mar 31 2020 18:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33318 * 126.10156 * 2 1 4 4 C 1.30856 * 109.68171 * 179.73707 * 3 2 1 5 5 N 1.34492 * 109.16687 * 0.02562 * 4 3 2 6 6 H 0.97000 * 126.47961 * 180.02562 * 5 4 3 7 7 C 1.36658 * 126.10733 * 179.68930 * 2 1 3 8 8 C 1.46759 * 126.84814 * 0.22784 * 7 2 1 9 9 O 1.21684 * 120.00033 * 253.03021 * 8 7 2 10 10 N 1.34772 * 120.00002 * 73.02516 * 8 7 2 11 11 C 1.46925 * 120.64431 * 4.76240 * 10 8 7 12 12 C 1.53626 * 108.53822 * 126.29286 * 11 10 8 13 13 C 1.53007 * 109.27046 * 54.81203 * 12 11 10 14 14 C 1.52985 * 109.63210 * 298.65626 * 13 12 11 15 15 C 1.46931 * 120.64247 * 185.04360 * 10 8 7 16 16 C 1.53251 * 109.35815 * 178.71539 * 13 12 11 17 17 N 1.47153 * 108.40823 * 187.91416 * 16 13 12 18 18 C 1.36944 * 120.98724 * 230.49871 * 17 16 13 19 19 H 1.07996 * 119.99931 * 149.44290 * 18 17 16 20 20 C 1.38809 * 119.99795 * 329.44133 * 18 17 16 21 21 N 1.31618 * 120.00249 * 350.01266 * 20 18 17 22 22 Si 1.86800 * 119.99801 * 170.01380 * 20 18 17 23 23 H 1.48498 * 109.47191 * 60.00113 * 22 20 18 24 24 H 1.48507 * 109.47160 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47459 * 299.99798 * 22 20 18 26 26 C 1.47156 * 118.02896 * 50.47196 * 17 16 13 27 27 C 1.53298 * 108.37122 * 309.41212 * 26 17 16 28 28 O 1.42889 * 109.54909 * 58.91602 * 13 12 11 29 29 H 1.09000 * 109.47301 * 90.02976 * 1 2 3 30 30 H 1.09007 * 109.47101 * 210.02684 * 1 2 3 31 31 H 1.09007 * 109.47587 * 330.02473 * 1 2 3 32 32 H 1.08003 * 125.42079 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.59317 * 246.12757 * 11 10 8 34 34 H 1.09004 * 109.58809 * 6.55843 * 11 10 8 35 35 H 1.08994 * 109.63066 * 294.81239 * 12 11 10 36 36 H 1.08999 * 109.42789 * 174.68371 * 12 11 10 37 37 H 1.09001 * 109.49006 * 301.25033 * 14 13 12 38 38 H 1.09001 * 109.51214 * 181.18143 * 14 13 12 39 39 H 1.08997 * 109.58956 * 353.44138 * 15 10 8 40 40 H 1.09007 * 109.58703 * 113.72305 * 15 10 8 41 41 H 1.08999 * 109.68048 * 307.64032 * 16 13 12 42 42 H 1.09004 * 109.68130 * 68.15152 * 16 13 12 43 43 H 0.97000 * 120.00232 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.67811 * 69.13064 * 26 17 16 45 45 H 1.08995 * 109.68521 * 189.68702 * 26 17 16 46 46 H 1.08997 * 109.51141 * 172.27699 * 27 26 17 47 47 H 1.09006 * 109.50905 * 292.42400 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.0772 0.0000 4 6 3.5477 0.7073 0.0057 5 7 3.6121 -0.6361 0.0090 6 1 4.4188 -1.1747 0.0136 7 6 2.3123 -1.1041 0.0060 8 6 1.8821 -2.5072 0.0089 9 8 1.9946 -3.1759 1.0193 10 7 1.3624 -3.0550 -1.1074 11 6 1.3156 -2.2939 -2.3632 12 6 1.9895 -3.1265 -3.4644 13 6 1.3223 -4.5015 -3.5375 14 6 1.4999 -5.2305 -2.2043 15 6 0.8261 -4.4228 -1.0905 16 6 1.9716 -5.3224 -4.6569 17 7 1.1950 -6.5593 -4.8367 18 6 1.8112 -7.7820 -4.8574 19 1 1.2873 -8.6569 -4.5018 20 6 3.1093 -7.8970 -5.3355 21 7 3.6776 -6.8799 -5.9479 22 14 4.0496 -9.4952 -5.1098 23 1 3.3198 -10.5985 -5.7845 24 1 5.4036 -9.3612 -5.7050 25 1 4.1730 -9.7966 -3.6610 26 6 -0.2637 -6.4433 -4.9929 27 6 -0.8036 -5.5698 -3.8547 28 8 -0.0705 -4.3430 -3.8143 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 4.3969 1.3746 0.0074 33 1 0.2780 -2.0975 -2.6331 34 1 1.8478 -1.3508 -2.2390 35 1 3.0482 -3.2477 -3.2357 36 1 1.8797 -2.6177 -4.4221 37 1 2.5626 -5.3351 -1.9857 38 1 1.0422 -6.2179 -2.2654 39 1 1.0351 -4.8855 -0.1260 40 1 -0.2509 -4.3951 -1.2568 41 1 1.9668 -4.7482 -5.5834 42 1 2.9976 -5.5691 -4.3835 43 1 4.5845 -6.9604 -6.2823 44 1 -0.4944 -5.9803 -5.9523 45 1 -0.7180 -7.4329 -4.9435 46 1 -1.8587 -5.3580 -4.0274 47 1 -0.6873 -6.0947 -2.9064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949537100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:42 Heat of formation + Delta-G solvation = 9.603530 kcal Electronic energy + Delta-G solvation = -30706.024252 eV Core-core repulsion = 26697.705620 eV Total energy + Delta-G solvation = -4008.318632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.39379 -40.18367 -38.75760 -36.16326 -34.41839 -33.45604 -32.52030 -31.69037 -31.26437 -30.60000 -28.40320 -27.43399 -26.46821 -24.11165 -23.43837 -23.16055 -22.32309 -21.42773 -20.53244 -19.53081 -18.83425 -18.06877 -16.92261 -16.88133 -15.89610 -15.57641 -15.43218 -15.25241 -14.65606 -14.54172 -14.42873 -14.32586 -13.68595 -13.65859 -13.58824 -13.20774 -13.04380 -12.98409 -12.81756 -12.58135 -12.35279 -12.06097 -11.87786 -11.58766 -11.08672 -10.99343 -10.92663 -10.75092 -10.66140 -10.58598 -10.31042 -10.24010 -10.17994 -10.02057 -9.90832 -9.47781 -9.04477 -8.61053 -8.57296 -8.52306 -6.70373 -5.88212 -3.37292 1.49265 2.18270 2.72988 2.90130 3.27215 3.30829 3.36551 3.37237 4.23788 4.28157 4.39639 4.48105 4.86728 4.93845 4.97547 5.08241 5.27967 5.29758 5.39163 5.43915 5.53532 5.56128 5.60007 5.63817 5.71380 5.77434 5.79214 5.83304 5.90364 5.93817 6.08980 6.15150 6.16986 6.33749 6.38407 6.44666 6.49077 6.65282 6.74330 6.81406 7.03277 7.06214 7.34188 7.46578 7.66781 7.73126 7.91039 8.02393 8.32852 9.08881 9.69808 10.28977 11.19110 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.003439 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.796515 B = 8140.971430 C = 8709.392191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.056 3.944 3 N -0.492 5.492 4 C 0.203 3.797 5 N -0.544 5.544 6 H 0.426 0.574 7 C -0.066 4.066 8 C 0.591 3.409 9 O -0.537 6.537 10 N -0.587 5.587 11 C 0.115 3.885 12 C -0.114 4.114 13 C 0.095 3.905 14 C -0.145 4.145 15 C 0.116 3.884 16 C 0.160 3.840 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.007 3.993 21 N -0.905 5.905 22 Si 0.904 3.096 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.110 3.890 27 C 0.046 3.954 28 O -0.381 6.381 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.214 0.786 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.072 0.928 41 H 0.026 0.974 42 H 0.092 0.908 43 H 0.255 0.745 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.147 12.843 8.901 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 N -0.212 5.212 4 C -0.080 4.080 5 N -0.147 5.147 6 H 0.264 0.736 7 C -0.184 4.184 8 C 0.376 3.624 9 O -0.414 6.414 10 N -0.319 5.319 11 C -0.008 4.008 12 C -0.153 4.153 13 C 0.054 3.946 14 C -0.183 4.183 15 C -0.005 4.005 16 C 0.035 3.965 17 N -0.316 5.316 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.192 4.192 21 N -0.549 5.549 22 Si 0.734 3.266 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.209 1.209 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.301 6.301 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.231 0.769 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.299 13.436 9.306 16.673 hybrid contribution 1.573 -2.117 -0.094 2.640 sum -1.725 11.318 9.212 14.695 Atomic orbital electron populations 1.20155 0.87057 1.03060 1.02936 1.20892 0.96507 0.86774 1.03547 1.70018 1.00452 1.30325 1.20444 1.25036 0.97326 0.81850 1.03801 1.43195 1.07693 1.08613 1.55211 0.73561 1.20663 0.85194 0.95090 1.17457 1.16954 0.78094 0.83971 0.83388 1.90834 1.55900 1.61972 1.32675 1.48055 1.59055 1.15509 1.09256 1.21827 1.02208 0.94040 0.82697 1.21903 0.99354 0.95221 0.98786 1.22165 0.82409 0.94526 0.95507 1.22314 1.01783 1.00116 0.94077 1.21706 0.98008 0.80329 1.00501 1.21345 0.96562 0.85822 0.92821 1.43987 1.00323 1.03004 1.84322 1.19113 0.97399 0.86159 1.35741 0.91685 1.25154 0.99158 0.97377 0.97504 1.69948 1.14401 1.30506 1.40050 0.86347 0.79094 0.83254 0.77918 1.20783 1.21546 1.20908 1.21600 0.86948 0.97739 0.95375 1.23022 0.94567 0.86594 0.99050 1.87767 1.20056 1.29977 1.92287 0.90533 0.91267 0.90533 0.76941 0.90146 0.90431 0.90624 0.89957 0.91188 0.89022 0.89439 0.90964 0.95560 0.89019 0.93470 0.95740 0.92158 0.90238 0.93561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.24 36.00 0.37 -0.41 16 2 C 0.06 0.69 6.71 -82.52 -0.55 0.14 16 3 N -0.49 -5.97 11.20 -10.65 -0.12 -6.09 16 4 C 0.20 1.83 13.01 -90.58 -1.18 0.65 16 5 N -0.54 -5.27 6.19 -10.79 -0.07 -5.34 16 6 H 0.43 3.10 8.96 -40.82 -0.37 2.74 16 7 C -0.07 -0.84 5.10 -82.14 -0.42 -1.26 16 8 C 0.59 8.74 7.18 -12.82 -0.09 8.65 16 9 O -0.54 -9.68 16.53 5.20 0.09 -9.59 16 10 N -0.59 -8.21 2.97 -174.01 -0.52 -8.72 16 11 C 0.11 1.47 6.07 -3.49 -0.02 1.45 16 12 C -0.11 -1.69 5.12 -26.40 -0.14 -1.83 16 13 C 0.09 1.67 0.68 -90.49 -0.06 1.61 16 14 C -0.14 -2.46 4.33 -26.64 -0.12 -2.58 16 15 C 0.12 1.72 6.20 -3.71 -0.02 1.70 16 16 C 0.16 3.60 4.03 -3.56 -0.01 3.58 16 17 N -0.59 -14.06 2.54 -171.85 -0.44 -14.50 16 18 C -0.25 -6.65 9.64 -15.06 -0.15 -6.80 16 19 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 20 C 0.01 0.19 5.08 -17.43 -0.09 0.10 16 21 N -0.91 -25.18 11.04 55.49 0.61 -24.57 16 22 Si 0.90 21.02 29.57 -169.99 -5.03 16.00 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C 0.11 2.19 6.74 -3.53 -0.02 2.17 16 27 C 0.05 0.76 6.60 37.31 0.25 1.01 16 28 O -0.38 -6.64 9.00 -35.23 -0.32 -6.96 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.21 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.08 1.03 7.82 -51.93 -0.41 0.62 16 34 H 0.08 0.93 6.09 -51.93 -0.32 0.61 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.09 1.70 6.16 -51.93 -0.32 1.38 16 39 H 0.09 1.35 7.00 -51.93 -0.36 0.99 16 40 H 0.07 1.03 7.83 -51.93 -0.41 0.62 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 2.30 6.25 -51.93 -0.32 1.98 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.05 0.75 6.29 -51.93 -0.33 0.43 16 LS Contribution 368.71 15.07 5.56 5.56 Total: -1.00 -32.47 368.71 -9.49 -41.96 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.01 Total: 4.08 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -2.26 Total: 8.18 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: -0.53 Total: -59.22 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.23 Total: -16.55 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.47 -9.49 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949537100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.560 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds