Wall clock time and date at job start Tue Mar 31 2020 18:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33318 * 126.10156 * 2 1 4 4 C 1.30856 * 109.68171 * 179.73707 * 3 2 1 5 5 N 1.34492 * 109.16687 * 0.02562 * 4 3 2 6 6 H 0.97000 * 126.47961 * 180.02562 * 5 4 3 7 7 C 1.36658 * 126.10733 * 179.68930 * 2 1 3 8 8 C 1.46759 * 126.84814 * 0.22784 * 7 2 1 9 9 O 1.21684 * 120.00033 * 253.03021 * 8 7 2 10 10 N 1.34772 * 120.00002 * 73.02516 * 8 7 2 11 11 C 1.46925 * 120.64431 * 4.76240 * 10 8 7 12 12 C 1.53626 * 108.53822 * 126.29286 * 11 10 8 13 13 C 1.53007 * 109.27046 * 54.81203 * 12 11 10 14 14 C 1.52985 * 109.63210 * 298.65626 * 13 12 11 15 15 C 1.46931 * 120.64247 * 185.04360 * 10 8 7 16 16 C 1.53251 * 109.35815 * 178.71539 * 13 12 11 17 17 N 1.47153 * 108.40823 * 187.91416 * 16 13 12 18 18 C 1.36944 * 120.98724 * 230.49871 * 17 16 13 19 19 H 1.07996 * 119.99931 * 149.44290 * 18 17 16 20 20 C 1.38809 * 119.99795 * 329.44133 * 18 17 16 21 21 N 1.31618 * 120.00249 * 350.01266 * 20 18 17 22 22 Si 1.86800 * 119.99801 * 170.01380 * 20 18 17 23 23 H 1.48498 * 109.47191 * 60.00113 * 22 20 18 24 24 H 1.48507 * 109.47160 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47459 * 299.99798 * 22 20 18 26 26 C 1.47156 * 118.02896 * 50.47196 * 17 16 13 27 27 C 1.53298 * 108.37122 * 309.41212 * 26 17 16 28 28 O 1.42889 * 109.54909 * 58.91602 * 13 12 11 29 29 H 1.09000 * 109.47301 * 90.02976 * 1 2 3 30 30 H 1.09007 * 109.47101 * 210.02684 * 1 2 3 31 31 H 1.09007 * 109.47587 * 330.02473 * 1 2 3 32 32 H 1.08003 * 125.42079 * 180.02562 * 4 3 2 33 33 H 1.08998 * 109.59317 * 246.12757 * 11 10 8 34 34 H 1.09004 * 109.58809 * 6.55843 * 11 10 8 35 35 H 1.08994 * 109.63066 * 294.81239 * 12 11 10 36 36 H 1.08999 * 109.42789 * 174.68371 * 12 11 10 37 37 H 1.09001 * 109.49006 * 301.25033 * 14 13 12 38 38 H 1.09001 * 109.51214 * 181.18143 * 14 13 12 39 39 H 1.08997 * 109.58956 * 353.44138 * 15 10 8 40 40 H 1.09007 * 109.58703 * 113.72305 * 15 10 8 41 41 H 1.08999 * 109.68048 * 307.64032 * 16 13 12 42 42 H 1.09004 * 109.68130 * 68.15152 * 16 13 12 43 43 H 0.97000 * 120.00232 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.67811 * 69.13064 * 26 17 16 45 45 H 1.08995 * 109.68521 * 189.68702 * 26 17 16 46 46 H 1.08997 * 109.51141 * 172.27699 * 27 26 17 47 47 H 1.09006 * 109.50905 * 292.42400 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2925 1.0772 0.0000 4 6 3.5477 0.7073 0.0057 5 7 3.6121 -0.6361 0.0090 6 1 4.4188 -1.1747 0.0136 7 6 2.3123 -1.1041 0.0060 8 6 1.8821 -2.5072 0.0089 9 8 1.9946 -3.1759 1.0193 10 7 1.3624 -3.0550 -1.1074 11 6 1.3156 -2.2939 -2.3632 12 6 1.9895 -3.1265 -3.4644 13 6 1.3223 -4.5015 -3.5375 14 6 1.4999 -5.2305 -2.2043 15 6 0.8261 -4.4228 -1.0905 16 6 1.9716 -5.3224 -4.6569 17 7 1.1950 -6.5593 -4.8367 18 6 1.8112 -7.7820 -4.8574 19 1 1.2873 -8.6569 -4.5018 20 6 3.1093 -7.8970 -5.3355 21 7 3.6776 -6.8799 -5.9479 22 14 4.0496 -9.4952 -5.1098 23 1 3.3198 -10.5985 -5.7845 24 1 5.4036 -9.3612 -5.7050 25 1 4.1730 -9.7966 -3.6610 26 6 -0.2637 -6.4433 -4.9929 27 6 -0.8036 -5.5698 -3.8547 28 8 -0.0705 -4.3430 -3.8143 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3634 -0.8898 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 4.3969 1.3746 0.0074 33 1 0.2780 -2.0975 -2.6331 34 1 1.8478 -1.3508 -2.2390 35 1 3.0482 -3.2477 -3.2357 36 1 1.8797 -2.6177 -4.4221 37 1 2.5626 -5.3351 -1.9857 38 1 1.0422 -6.2179 -2.2654 39 1 1.0351 -4.8855 -0.1260 40 1 -0.2509 -4.3951 -1.2568 41 1 1.9668 -4.7482 -5.5834 42 1 2.9976 -5.5691 -4.3835 43 1 4.5845 -6.9604 -6.2823 44 1 -0.4944 -5.9803 -5.9523 45 1 -0.7180 -7.4329 -4.9435 46 1 -1.8587 -5.3580 -4.0274 47 1 -0.6873 -6.0947 -2.9064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949537100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:40 Heat of formation + Delta-G solvation = -11.108267 kcal Electronic energy + Delta-G solvation = -30706.922382 eV Core-core repulsion = 26697.705620 eV Total energy + Delta-G solvation = -4009.216763 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.22752 -41.48643 -40.08872 -37.50943 -36.16351 -34.26726 -33.84124 -33.20724 -32.75171 -31.66037 -29.84818 -28.62070 -27.93397 -25.53030 -24.76643 -24.64259 -23.41215 -22.58554 -21.75691 -20.63521 -20.09717 -19.14625 -18.78758 -17.98637 -17.21701 -16.93901 -16.57028 -16.40328 -16.18644 -15.80657 -15.74925 -15.45704 -15.28736 -15.23847 -14.82281 -14.60908 -14.35029 -13.91997 -13.88866 -13.74271 -13.47500 -13.26760 -13.16126 -13.10109 -12.77214 -12.74727 -12.44230 -12.31019 -12.25150 -12.14599 -11.79171 -11.72854 -11.59084 -11.05231 -11.00004 -10.89512 -10.68208 -10.46521 -9.78169 -9.43909 -8.63188 -7.89409 -5.41637 0.62825 1.16768 1.44437 1.45307 1.51722 1.76971 2.03044 2.37661 2.45614 2.89802 3.25005 3.39262 3.52724 3.63930 3.79380 3.91645 3.97437 4.06387 4.11073 4.28105 4.30749 4.33651 4.44132 4.47350 4.53173 4.69293 4.72638 4.79199 4.80451 4.82589 4.87451 4.92174 4.96548 4.97488 5.02708 5.09033 5.14271 5.25150 5.31677 5.43638 5.57303 5.57721 5.62461 6.20782 6.32839 6.36852 6.44772 6.85947 6.96677 7.09654 7.77088 8.32016 9.14727 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017444 B = 0.003439 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.796515 B = 8140.971430 C = 8709.392191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.054 3.946 3 N -0.525 5.525 4 C 0.226 3.774 5 N -0.540 5.540 6 H 0.436 0.564 7 C -0.095 4.095 8 C 0.596 3.404 9 O -0.575 6.575 10 N -0.584 5.584 11 C 0.128 3.872 12 C -0.111 4.111 13 C 0.107 3.893 14 C -0.134 4.134 15 C 0.126 3.874 16 C 0.171 3.829 17 N -0.610 5.610 18 C -0.262 4.262 19 H 0.068 0.932 20 C -0.044 4.044 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.104 3.896 27 C 0.052 3.948 28 O -0.378 6.378 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.259 0.741 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.087 0.913 41 H -0.005 1.005 42 H 0.059 0.941 43 H 0.250 0.750 44 H 0.014 0.986 45 H 0.067 0.933 46 H 0.117 0.883 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 14.236 9.833 17.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 N -0.245 5.245 4 C -0.057 4.057 5 N -0.144 5.144 6 H 0.276 0.724 7 C -0.213 4.213 8 C 0.383 3.617 9 O -0.455 6.455 10 N -0.315 5.315 11 C 0.006 3.994 12 C -0.150 4.150 13 C 0.066 3.934 14 C -0.172 4.172 15 C 0.004 3.996 16 C 0.045 3.955 17 N -0.335 5.335 18 C -0.392 4.392 19 H 0.085 0.915 20 C -0.240 4.240 21 N -0.580 5.580 22 Si 0.792 3.208 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.021 4.021 27 C -0.025 4.025 28 O -0.297 6.297 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.275 0.725 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.013 0.987 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.085 0.915 46 H 0.135 0.865 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.991 14.826 10.232 18.451 hybrid contribution 1.773 -2.529 -0.431 3.119 sum -2.218 12.297 9.801 15.881 Atomic orbital electron populations 1.20212 0.86262 1.03124 1.03684 1.21195 0.97319 0.86761 1.02641 1.70063 1.01723 1.30478 1.22272 1.25964 0.97733 0.81824 1.00203 1.43228 1.07194 1.09086 1.54879 0.72350 1.20370 0.86668 0.93864 1.20350 1.17185 0.77143 0.84630 0.82720 1.90809 1.57379 1.63271 1.34008 1.48066 1.58668 1.15143 1.09665 1.21787 1.02693 0.93811 0.81116 1.21881 0.99100 0.93920 1.00080 1.21911 0.82504 0.95309 0.93686 1.22143 1.00766 0.99727 0.94590 1.21540 0.98435 0.80564 0.99034 1.21122 0.95524 0.85780 0.93117 1.44246 1.02002 1.02656 1.84580 1.19437 0.97711 0.87243 1.34795 0.91462 1.25845 1.00136 1.00146 0.97854 1.70114 1.14284 1.32196 1.41438 0.85396 0.77496 0.80034 0.77840 1.20161 1.22061 1.20410 1.21792 0.84892 0.99016 0.96434 1.23067 0.96036 0.85706 0.97736 1.87782 1.19466 1.30335 1.92126 0.89378 0.91804 0.89850 0.72517 0.89115 0.88867 0.90991 0.89463 0.92955 0.90600 0.90028 0.89528 0.98703 0.92296 0.94100 0.96769 0.91483 0.86491 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.24 71.24 0.73 -0.70 16 2 C 0.05 1.23 6.71 41.96 0.28 1.51 16 3 N -0.53 -11.38 11.20 -187.60 -2.10 -13.48 16 4 C 0.23 3.34 13.01 180.33 2.35 5.69 16 5 N -0.54 -9.25 6.19 -188.05 -1.16 -10.41 16 6 H 0.44 5.47 8.96 -92.71 -0.83 4.64 16 7 C -0.10 -2.26 5.10 40.01 0.20 -2.05 16 8 C 0.60 17.06 7.18 86.47 0.62 17.69 16 9 O -0.58 -20.59 16.53 -4.30 -0.07 -20.66 16 10 N -0.58 -15.58 2.97 -822.66 -2.44 -18.02 16 11 C 0.13 3.03 6.07 86.51 0.53 3.55 16 12 C -0.11 -3.22 5.12 30.81 0.16 -3.06 16 13 C 0.11 3.74 0.68 -10.71 -0.01 3.73 16 14 C -0.13 -4.55 4.33 30.65 0.13 -4.42 16 15 C 0.13 3.61 6.20 86.36 0.54 4.15 16 16 C 0.17 7.89 4.03 86.34 0.35 8.24 16 17 N -0.61 -29.49 2.54 -697.61 -1.77 -31.26 16 18 C -0.26 -13.90 9.64 84.03 0.81 -13.09 16 19 H 0.07 3.47 7.85 -2.91 -0.02 3.45 16 20 C -0.04 -2.40 5.08 84.86 0.43 -1.97 16 21 N -0.93 -53.79 11.04 21.65 0.24 -53.56 16 22 Si 0.96 43.92 29.57 68.60 2.03 45.95 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 C 0.10 4.11 6.74 86.35 0.58 4.69 16 27 C 0.05 1.62 6.60 72.08 0.48 2.10 16 28 O -0.38 -12.49 9.00 -148.98 -1.34 -13.83 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.26 7.94 -2.38 -0.02 1.25 16 31 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.26 1.08 8.06 -2.91 -0.02 1.05 16 33 H 0.09 2.04 7.82 -2.39 -0.02 2.02 16 34 H 0.09 1.99 6.09 -2.38 -0.01 1.98 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 37 H 0.05 1.94 8.14 -2.39 -0.02 1.93 16 38 H 0.08 2.82 6.16 -2.39 -0.01 2.81 16 39 H 0.08 2.48 7.00 -2.39 -0.02 2.46 16 40 H 0.09 2.26 7.83 -2.38 -0.02 2.25 16 41 H -0.01 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.06 3.10 6.25 -2.39 -0.01 3.09 16 43 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.07 2.51 7.96 -2.39 -0.02 2.49 16 46 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.05 1.62 6.29 -2.38 -0.01 1.60 16 Total: -1.00 -72.10 368.71 1.71 -70.38 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.17 Total: 18.83 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 8.17 Total: 26.06 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -7.24 Total: -126.73 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -1.41 Total: -34.49 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.10 1.71 -70.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949537100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.276 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds