Wall clock time and date at job start Tue Mar 31 2020 17:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32172 * 119.14340 * 2 1 4 4 C 1.32358 * 120.60595 * 179.97438 * 3 2 1 5 5 C 1.47500 * 120.50985 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00360 * 180.02562 * 5 4 3 7 7 N 1.34784 * 120.00024 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00104 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49845 * 35.05869 * 8 7 5 10 10 C 1.53195 * 109.49722 * 275.00011 * 8 7 5 11 11 N 1.46917 * 108.77828 * 185.41517 * 10 8 7 12 12 C 1.36935 * 120.63313 * 233.58525 * 11 10 8 13 13 H 1.08003 * 120.00334 * 151.84309 * 12 11 10 14 14 C 1.38816 * 120.00109 * 331.84348 * 12 11 10 15 15 N 1.31624 * 119.99356 * 343.07479 * 14 12 11 16 16 Si 1.86793 * 120.00395 * 163.07501 * 14 12 11 17 17 H 1.48500 * 109.47341 * 59.99642 * 16 14 12 18 18 H 1.48504 * 109.47235 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46651 * 299.99824 * 16 14 12 20 20 C 1.46934 * 118.73910 * 53.60508 * 11 10 8 21 21 C 1.53194 * 108.89214 * 306.32295 * 20 11 10 22 22 C 1.53042 * 109.49765 * 155.16276 * 8 7 5 23 23 H 1.08991 * 109.45872 * 61.30992 * 22 8 7 24 24 C 1.52999 * 109.45796 * 301.33122 * 22 8 7 25 25 C 1.46676 * 118.98258 * 0.25735 * 4 3 2 26 26 O 1.21854 * 120.78727 * 179.74488 * 25 4 3 27 27 N 1.35154 * 118.42880 * 359.48623 * 25 4 3 28 28 H 0.97007 * 120.36352 * 180.26209 * 27 25 4 29 29 C 1.34893 * 119.26674 * 0.49128 * 27 25 4 30 30 C 1.50702 * 119.50175 * 179.74955 * 29 27 25 31 31 H 1.08998 * 109.47530 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.47306 * 119.99408 * 1 2 3 33 33 H 1.09000 * 109.47411 * 239.99184 * 1 2 3 34 34 H 0.97001 * 119.99354 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.58933 * 65.62279 * 10 8 7 36 36 H 1.09007 * 109.58443 * 305.19958 * 10 8 7 37 37 H 0.96997 * 119.99488 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.58460 * 66.18260 * 20 11 10 39 39 H 1.09001 * 109.58650 * 186.46265 * 20 11 10 40 40 H 1.08996 * 109.49250 * 174.65763 * 21 20 11 41 41 H 1.09002 * 109.49602 * 294.75299 * 21 20 11 42 42 H 1.09000 * 109.46817 * 59.99939 * 24 22 8 43 43 H 1.08991 * 109.47274 * 179.97438 * 24 22 8 44 44 H 1.08995 * 109.47589 * 300.00425 * 24 22 8 45 45 H 1.09000 * 109.46914 * 270.01617 * 30 29 27 46 46 H 1.08996 * 109.47178 * 30.01917 * 30 29 27 47 47 H 1.08998 * 109.47100 * 150.02451 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1899 2.4776 -0.0001 6 8 5.4058 2.4979 -0.0001 7 7 3.4967 3.6336 -0.0006 8 6 4.2079 4.9143 -0.0017 9 1 5.1197 4.8236 -0.5922 10 6 4.5668 5.3011 1.4365 11 7 5.1616 6.6445 1.4305 12 6 6.3816 6.8699 2.0101 13 1 7.0146 7.6650 1.6444 14 6 6.8048 6.0766 3.0677 15 7 5.9347 5.3440 3.7301 16 14 8.6090 6.0487 3.5508 17 1 9.0401 7.4172 3.9339 18 1 8.7993 5.1290 4.7011 19 1 9.4220 5.5773 2.4010 20 6 4.4224 7.7416 0.7912 21 6 4.0654 7.3309 -0.6409 22 6 3.3112 5.9961 -0.6081 23 1 2.4112 6.1030 -0.0027 24 6 2.9226 5.5963 -2.0329 25 6 4.2170 -0.0763 -0.0047 26 8 5.4355 -0.0836 -0.0090 27 7 3.5184 -1.2333 0.0008 28 1 3.9814 -2.0857 0.0014 29 6 2.1702 -1.1896 0.0008 30 6 1.3859 -2.4765 0.0012 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3634 -0.5138 -0.8901 33 1 -0.3634 -0.5139 0.8899 34 1 2.5268 3.6173 -0.0010 35 1 5.2838 4.5857 1.8393 36 1 3.6657 5.3033 2.0499 37 1 6.2304 4.7900 4.4693 38 1 3.5096 7.9427 1.3520 39 1 5.0433 8.6372 0.7704 40 1 3.4358 8.0973 -1.0928 41 1 4.9785 7.2181 -1.2253 42 1 2.3845 4.6487 -2.0104 43 1 2.2836 6.3664 -2.4648 44 1 3.8225 5.4888 -2.6384 45 1 1.1971 -2.7872 -1.0264 46 1 1.9566 -3.2496 0.5156 47 1 0.4367 -2.3233 0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966907765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:43 Heat of formation + Delta-G solvation = -12.540244 kcal Electronic energy + Delta-G solvation = -29833.416088 eV Core-core repulsion = 25824.137230 eV Total energy + Delta-G solvation = -4009.278858 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85554 -39.30358 -38.05848 -37.37528 -35.53848 -34.19480 -33.37917 -32.84367 -30.86427 -29.69921 -28.66673 -27.33590 -26.71009 -24.82846 -24.02842 -23.42879 -21.95527 -20.93250 -20.23943 -19.38903 -18.77493 -18.33754 -16.76914 -16.68133 -16.36049 -15.97830 -15.23834 -14.78682 -14.44437 -14.28099 -14.09765 -13.95616 -13.63060 -13.54070 -13.46442 -13.34852 -13.28043 -13.15246 -12.82251 -12.32085 -12.30431 -12.02138 -11.90283 -11.56836 -11.50375 -11.43459 -11.33175 -10.79706 -10.60094 -10.50773 -10.35428 -10.09167 -9.99840 -9.82432 -9.74062 -9.39746 -9.18148 -8.40689 -8.31195 -8.11398 -6.54514 -5.65121 -3.08503 0.01400 1.53644 2.23691 2.85207 3.43245 3.51288 3.57500 3.60512 3.74414 3.84563 4.04289 4.15029 4.41024 4.64170 4.75923 4.94206 5.02166 5.16613 5.27114 5.29901 5.31280 5.37494 5.50873 5.57962 5.66180 5.71099 5.83964 6.02248 6.12486 6.13357 6.13668 6.19658 6.23278 6.35971 6.50737 6.55830 6.65100 6.84234 6.86261 7.06865 7.08616 7.33839 7.43515 7.65605 7.84625 7.93673 8.09992 8.58911 8.76784 9.33567 9.97759 10.52724 11.42801 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003726 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.443875 B = 7513.118917 C = 8927.190017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.031 4.031 3 N -0.356 5.356 4 C 0.024 3.976 5 C 0.573 3.427 6 O -0.499 6.499 7 N -0.698 5.698 8 C 0.125 3.875 9 H 0.083 0.917 10 C 0.166 3.834 11 N -0.587 5.587 12 C -0.257 4.257 13 H 0.065 0.935 14 C 0.008 3.992 15 N -0.899 5.899 16 Si 0.902 3.098 17 H -0.283 1.283 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.142 3.858 21 C -0.125 4.125 22 C -0.091 4.091 23 H 0.068 0.932 24 C -0.144 4.144 25 C 0.494 3.506 26 O -0.478 6.478 27 N -0.588 5.588 28 H 0.419 0.581 29 C 0.146 3.854 30 C -0.129 4.129 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.400 0.600 35 H 0.095 0.905 36 H 0.018 0.982 37 H 0.253 0.747 38 H 0.018 0.982 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.060 0.940 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.081 0.919 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 -15.117 -10.514 25.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.157 4.157 3 N -0.074 5.074 4 C -0.146 4.146 5 C 0.355 3.645 6 O -0.370 6.370 7 N -0.350 5.350 8 C 0.019 3.981 9 H 0.101 0.899 10 C 0.039 3.961 11 N -0.310 5.310 12 C -0.386 4.386 13 H 0.083 0.917 14 C -0.192 4.192 15 N -0.542 5.542 16 Si 0.732 3.268 17 H -0.210 1.210 18 H -0.217 1.217 19 H -0.208 1.208 20 C 0.016 3.984 21 C -0.165 4.165 22 C -0.110 4.110 23 H 0.086 0.914 24 C -0.202 4.202 25 C 0.285 3.715 26 O -0.348 6.348 27 N -0.224 5.224 28 H 0.259 0.741 29 C 0.031 3.969 30 C -0.187 4.187 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.113 0.887 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.036 0.964 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.842 -14.383 -10.347 23.767 hybrid contribution 0.970 -1.418 0.371 1.758 sum -14.871 -15.801 -9.975 23.882 Atomic orbital electron populations 1.20506 0.87095 1.04437 1.02039 1.20106 0.97807 0.85680 1.12080 1.67564 1.08494 1.29390 1.01905 1.24174 0.88750 0.94254 1.07383 1.17000 0.86699 0.82055 0.78717 1.90939 1.12204 1.86171 1.47709 1.45808 1.10207 1.05221 1.73759 1.22040 0.94514 0.79776 1.01721 0.89871 1.21107 0.97669 0.88165 0.89122 1.43942 1.19672 1.02217 1.65194 1.19089 0.92449 1.17100 1.09994 0.91700 1.25030 0.97855 1.00576 0.95701 1.70004 1.32276 1.30909 1.21044 0.86382 0.85477 0.77242 0.77745 1.20969 1.21681 1.20822 1.20957 0.95074 0.91853 0.90526 1.22126 0.99382 0.95035 0.99945 1.21345 0.98446 0.95612 0.95622 0.91400 1.21849 1.00954 1.00512 0.96859 1.19149 0.88511 0.83982 0.79844 1.91083 1.11398 1.85149 1.47157 1.43742 1.06344 1.11948 1.60396 0.74064 1.21475 0.83570 0.98912 0.92957 1.21204 1.00918 0.91881 1.04673 0.89944 0.91022 0.90869 0.76539 0.88726 0.96397 0.93660 0.96448 0.92687 0.92596 0.92107 0.93089 0.93191 0.92987 0.88580 0.90042 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 8.82 36.00 0.32 -0.15 16 2 C -0.03 -0.29 6.70 -83.18 -0.56 -0.85 16 3 N -0.36 -4.75 9.55 -4.85 -0.05 -4.79 16 4 C 0.02 0.40 6.96 -80.46 -0.56 -0.16 16 5 C 0.57 11.81 7.77 -12.48 -0.10 11.72 16 6 O -0.50 -12.71 15.17 -15.20 -0.23 -12.94 16 7 N -0.70 -12.91 4.36 -54.74 -0.24 -13.15 16 8 C 0.12 2.59 2.07 -67.81 -0.14 2.45 16 9 H 0.08 1.96 7.58 -51.93 -0.39 1.57 16 10 C 0.17 4.27 4.88 -3.71 -0.02 4.25 16 11 N -0.59 -15.49 2.99 -172.31 -0.52 -16.00 16 12 C -0.26 -7.47 9.58 -15.06 -0.14 -7.61 16 13 H 0.07 1.84 7.89 -52.48 -0.41 1.42 16 14 C 0.01 0.22 4.92 -17.43 -0.09 0.14 16 15 N -0.90 -27.87 11.20 55.49 0.62 -27.24 16 16 Si 0.90 23.48 29.59 -169.99 -5.03 18.45 16 17 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 19 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 20 C 0.14 3.05 6.50 -3.71 -0.02 3.02 16 21 C -0.13 -2.20 5.39 -26.45 -0.14 -2.34 16 22 C -0.09 -1.54 2.27 -90.42 -0.21 -1.75 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 C -0.14 -2.02 9.02 37.16 0.34 -1.69 16 25 C 0.49 7.98 7.93 -12.68 -0.10 7.88 16 26 O -0.48 -9.87 16.40 -15.42 -0.25 -10.12 16 27 N -0.59 -5.84 5.29 -9.45 -0.05 -5.89 16 28 H 0.42 2.87 8.81 -40.82 -0.36 2.51 16 29 C 0.15 1.10 6.78 -81.98 -0.56 0.54 16 30 C -0.13 -0.32 9.59 36.01 0.35 0.03 16 31 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.07 0.29 7.36 -51.93 -0.38 -0.10 16 34 H 0.40 6.27 7.66 -40.82 -0.31 5.96 16 35 H 0.09 2.87 6.06 -51.93 -0.31 2.56 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.25 7.67 8.31 -40.82 -0.34 7.33 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.11 8.14 -51.93 -0.42 -0.32 16 46 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 47 H 0.10 0.13 6.44 -51.93 -0.33 -0.21 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -38.97 379.90 -8.74 -47.71 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.08 Total: 2.78 kcal Atomic # 6 Polarization: 17.11 SS G_CDS: -1.63 Total: 15.48 kcal Atomic # 7 Polarization: -66.85 SS G_CDS: -0.23 Total: -67.08 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.48 Total: -23.07 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.03 Total: 18.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.97 -8.74 -47.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966907765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.167 kcal (2) G-P(sol) polarization free energy of solvation -38.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds