Wall clock time and date at job start Tue Mar 31 2020 17:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.32172 * 119.14340 * 2 1 4 4 C 1.32358 * 120.60595 * 179.97438 * 3 2 1 5 5 C 1.47500 * 120.50985 * 179.97438 * 4 3 2 6 6 O 1.21601 * 120.00360 * 180.02562 * 5 4 3 7 7 N 1.34784 * 120.00024 * 0.02562 * 5 4 3 8 8 C 1.46496 * 120.00104 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.49845 * 35.05869 * 8 7 5 10 10 C 1.53195 * 109.49722 * 275.00011 * 8 7 5 11 11 N 1.46917 * 108.77828 * 185.41517 * 10 8 7 12 12 C 1.36935 * 120.63313 * 233.58525 * 11 10 8 13 13 H 1.08003 * 120.00334 * 151.84309 * 12 11 10 14 14 C 1.38816 * 120.00109 * 331.84348 * 12 11 10 15 15 N 1.31624 * 119.99356 * 343.07479 * 14 12 11 16 16 Si 1.86793 * 120.00395 * 163.07501 * 14 12 11 17 17 H 1.48500 * 109.47341 * 59.99642 * 16 14 12 18 18 H 1.48504 * 109.47235 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46651 * 299.99824 * 16 14 12 20 20 C 1.46934 * 118.73910 * 53.60508 * 11 10 8 21 21 C 1.53194 * 108.89214 * 306.32295 * 20 11 10 22 22 C 1.53042 * 109.49765 * 155.16276 * 8 7 5 23 23 H 1.08991 * 109.45872 * 61.30992 * 22 8 7 24 24 C 1.52999 * 109.45796 * 301.33122 * 22 8 7 25 25 C 1.46676 * 118.98258 * 0.25735 * 4 3 2 26 26 O 1.21854 * 120.78727 * 179.74488 * 25 4 3 27 27 N 1.35154 * 118.42880 * 359.48623 * 25 4 3 28 28 H 0.97007 * 120.36352 * 180.26209 * 27 25 4 29 29 C 1.34893 * 119.26674 * 0.49128 * 27 25 4 30 30 C 1.50702 * 119.50175 * 179.74955 * 29 27 25 31 31 H 1.08998 * 109.47530 * 0.02562 * 1 2 3 32 32 H 1.09007 * 109.47306 * 119.99408 * 1 2 3 33 33 H 1.09000 * 109.47411 * 239.99184 * 1 2 3 34 34 H 0.97001 * 119.99354 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.58933 * 65.62279 * 10 8 7 36 36 H 1.09007 * 109.58443 * 305.19958 * 10 8 7 37 37 H 0.96997 * 119.99488 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.58460 * 66.18260 * 20 11 10 39 39 H 1.09001 * 109.58650 * 186.46265 * 20 11 10 40 40 H 1.08996 * 109.49250 * 174.65763 * 21 20 11 41 41 H 1.09002 * 109.49602 * 294.75299 * 21 20 11 42 42 H 1.09000 * 109.46817 * 59.99939 * 24 22 8 43 43 H 1.08991 * 109.47274 * 179.97438 * 24 22 8 44 44 H 1.08995 * 109.47589 * 300.00425 * 24 22 8 45 45 H 1.09000 * 109.46914 * 270.01617 * 30 29 27 46 46 H 1.08996 * 109.47178 * 30.01917 * 30 29 27 47 47 H 1.08998 * 109.47100 * 150.02451 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1882 0.0005 5 6 4.1899 2.4776 -0.0001 6 8 5.4058 2.4979 -0.0001 7 7 3.4967 3.6336 -0.0006 8 6 4.2079 4.9143 -0.0017 9 1 5.1197 4.8236 -0.5922 10 6 4.5668 5.3011 1.4365 11 7 5.1616 6.6445 1.4305 12 6 6.3816 6.8699 2.0101 13 1 7.0146 7.6650 1.6444 14 6 6.8048 6.0766 3.0677 15 7 5.9347 5.3440 3.7301 16 14 8.6090 6.0487 3.5508 17 1 9.0401 7.4172 3.9339 18 1 8.7993 5.1290 4.7011 19 1 9.4220 5.5773 2.4010 20 6 4.4224 7.7416 0.7912 21 6 4.0654 7.3309 -0.6409 22 6 3.3112 5.9961 -0.6081 23 1 2.4112 6.1030 -0.0027 24 6 2.9226 5.5963 -2.0329 25 6 4.2170 -0.0763 -0.0047 26 8 5.4355 -0.0836 -0.0090 27 7 3.5184 -1.2333 0.0008 28 1 3.9814 -2.0857 0.0014 29 6 2.1702 -1.1896 0.0008 30 6 1.3859 -2.4765 0.0012 31 1 -0.3634 1.0276 -0.0005 32 1 -0.3634 -0.5138 -0.8901 33 1 -0.3634 -0.5139 0.8899 34 1 2.5268 3.6173 -0.0010 35 1 5.2838 4.5857 1.8393 36 1 3.6657 5.3033 2.0499 37 1 6.2304 4.7900 4.4693 38 1 3.5096 7.9427 1.3520 39 1 5.0433 8.6372 0.7704 40 1 3.4358 8.0973 -1.0928 41 1 4.9785 7.2181 -1.2253 42 1 2.3845 4.6487 -2.0104 43 1 2.2836 6.3664 -2.4648 44 1 3.8225 5.4888 -2.6384 45 1 1.1971 -2.7872 -1.0264 46 1 1.9566 -3.2496 0.5156 47 1 0.4367 -2.3233 0.5146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966907765.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:42 Heat of formation + Delta-G solvation = -43.373584 kcal Electronic energy + Delta-G solvation = -29834.753122 eV Core-core repulsion = 25824.137230 eV Total energy + Delta-G solvation = -4010.615892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.88399 -40.87869 -39.28845 -38.95466 -36.59108 -36.06714 -34.67766 -34.04762 -32.81863 -30.86186 -29.77831 -28.98602 -27.79149 -25.92329 -25.58744 -24.77500 -23.38928 -22.63546 -21.68314 -21.02368 -19.84877 -19.45473 -18.75995 -17.98967 -17.37421 -17.26698 -16.89563 -16.68091 -15.85232 -15.69581 -15.28996 -15.21157 -15.06754 -14.93813 -14.89845 -14.47250 -14.11275 -14.06642 -13.84925 -13.75535 -13.55910 -13.28686 -13.06064 -12.80095 -12.72576 -12.71707 -12.59698 -12.42482 -12.39438 -12.32113 -12.18017 -11.92125 -11.63806 -11.53742 -11.21480 -11.20241 -10.56645 -10.52367 -10.09499 -9.08828 -8.69992 -7.90671 -5.36711 -0.97079 0.50397 1.23598 1.36539 1.45010 1.48412 1.58230 2.15727 2.47341 2.57229 2.93897 3.01174 3.26454 3.41645 3.71055 3.77095 3.82310 3.96731 4.01761 4.17705 4.47689 4.53713 4.59152 4.66085 4.67180 4.72115 4.74809 4.91824 4.93328 4.96961 4.98516 5.07130 5.12913 5.17783 5.20740 5.22220 5.24524 5.29970 5.45347 5.46444 5.53194 5.54208 5.60426 5.77557 6.32478 6.37161 6.55662 6.68821 7.09678 7.29288 7.83704 8.33285 9.14050 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012528 B = 0.003726 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.443875 B = 7513.118917 C = 8927.190017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.050 4.050 3 N -0.337 5.337 4 C -0.063 4.063 5 C 0.570 3.430 6 O -0.569 6.569 7 N -0.687 5.687 8 C 0.140 3.860 9 H 0.047 0.953 10 C 0.181 3.819 11 N -0.609 5.609 12 C -0.265 4.265 13 H 0.070 0.930 14 C -0.052 4.052 15 N -0.931 5.931 16 Si 0.961 3.039 17 H -0.261 1.261 18 H -0.295 1.295 19 H -0.288 1.288 20 C 0.136 3.864 21 C -0.115 4.115 22 C -0.084 4.084 23 H 0.081 0.919 24 C -0.134 4.134 25 C 0.487 3.513 26 O -0.545 6.545 27 N -0.563 5.563 28 H 0.438 0.562 29 C 0.199 3.801 30 C -0.132 4.132 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.415 0.585 35 H 0.038 0.962 36 H 0.000 1.000 37 H 0.246 0.754 38 H 0.024 0.976 39 H 0.058 0.942 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.130 0.870 46 H 0.103 0.897 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.464 -17.216 -12.228 30.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.181 4.181 3 N -0.055 5.055 4 C -0.223 4.223 5 C 0.356 3.644 6 O -0.446 6.446 7 N -0.339 5.339 8 C 0.034 3.966 9 H 0.065 0.935 10 C 0.054 3.946 11 N -0.333 5.333 12 C -0.395 4.395 13 H 0.088 0.912 14 C -0.247 4.247 15 N -0.577 5.577 16 Si 0.789 3.211 17 H -0.186 1.186 18 H -0.221 1.221 19 H -0.215 1.215 20 C 0.011 3.989 21 C -0.154 4.154 22 C -0.103 4.103 23 H 0.099 0.901 24 C -0.191 4.191 25 C 0.282 3.718 26 O -0.422 6.422 27 N -0.198 5.198 28 H 0.281 0.719 29 C 0.080 3.920 30 C -0.188 4.188 31 H 0.090 0.910 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.252 0.748 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.055 0.945 38 H 0.042 0.958 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.148 0.852 46 H 0.122 0.878 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.308 -16.425 -12.088 28.780 hybrid contribution 1.992 -1.090 0.889 2.439 sum -18.316 -17.515 -11.199 27.707 Atomic orbital electron populations 1.20718 0.83381 1.04878 1.04916 1.21105 1.00026 0.85101 1.11841 1.67446 1.06884 1.31912 0.99241 1.23071 0.89761 0.92488 1.16988 1.17625 0.86224 0.83791 0.76805 1.90871 1.15216 1.87425 1.51108 1.45583 1.10636 1.04215 1.73421 1.21576 0.94862 0.82234 0.97961 0.93506 1.20746 0.95039 0.87138 0.91709 1.44227 1.19712 1.03740 1.65580 1.19485 0.93880 1.16715 1.09445 0.91214 1.25822 1.01654 1.00926 0.96323 1.70172 1.33883 1.32013 1.21633 0.85428 0.80816 0.78027 0.76814 1.18583 1.22080 1.21494 1.21195 0.94705 0.90494 0.92507 1.22034 0.99903 0.96431 0.97039 1.21319 0.97630 0.93605 0.97707 0.90052 1.21759 1.01149 1.02035 0.94186 1.19105 0.87849 0.85296 0.79533 1.91031 1.13927 1.86164 1.51094 1.43693 1.07566 1.11264 1.57263 0.71870 1.22603 0.82331 1.01302 0.85784 1.21622 1.01238 0.88686 1.07272 0.90975 0.87742 0.88152 0.74799 0.94377 0.98190 0.94541 0.95821 0.92392 0.88043 0.93230 0.92291 0.89825 0.94026 0.85231 0.87803 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 8.82 71.23 0.63 0.15 16 2 C -0.05 -0.77 6.70 42.03 0.28 -0.49 16 3 N -0.34 -8.86 9.55 -169.25 -1.62 -10.48 16 4 C -0.06 -2.26 6.96 43.71 0.30 -1.95 16 5 C 0.57 26.09 7.77 86.68 0.67 26.76 16 6 O -0.57 -32.84 15.17 15.54 0.24 -32.61 16 7 N -0.69 -27.43 4.36 -445.34 -1.94 -29.38 16 8 C 0.14 6.23 2.07 45.07 0.09 6.33 16 9 H 0.05 2.43 7.58 -2.39 -0.02 2.41 16 10 C 0.18 10.03 4.88 86.37 0.42 10.45 16 11 N -0.61 -33.77 2.99 -699.07 -2.09 -35.86 16 12 C -0.27 -16.17 9.58 84.03 0.81 -15.36 16 13 H 0.07 4.08 7.89 -2.91 -0.02 4.06 16 14 C -0.05 -3.25 4.92 84.86 0.42 -2.83 16 15 N -0.93 -61.77 11.20 21.65 0.24 -61.53 16 16 Si 0.96 50.83 29.59 68.60 2.03 52.86 16 17 H -0.26 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.29 -15.60 7.11 99.48 0.71 -14.90 16 19 H -0.29 -15.38 7.11 99.48 0.71 -14.68 16 20 C 0.14 5.85 6.50 86.36 0.56 6.42 16 21 C -0.11 -3.90 5.39 30.78 0.17 -3.73 16 22 C -0.08 -2.79 2.27 -10.66 -0.02 -2.81 16 23 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 24 C -0.13 -3.49 9.02 71.98 0.65 -2.84 16 25 C 0.49 16.75 7.93 86.39 0.68 17.43 16 26 O -0.54 -24.89 16.40 14.73 0.24 -24.64 16 27 N -0.56 -10.23 5.29 -301.76 -1.60 -11.82 16 28 H 0.44 4.95 8.81 -92.70 -0.82 4.13 16 29 C 0.20 2.13 6.78 41.61 0.28 2.41 16 30 C -0.13 0.32 9.59 71.24 0.68 1.00 16 31 H 0.07 0.66 8.10 -2.39 -0.02 0.64 16 32 H 0.10 0.01 8.09 -2.38 -0.02 -0.01 16 33 H 0.10 0.12 7.36 -2.39 -0.02 0.10 16 34 H 0.41 13.57 7.66 -92.71 -0.71 12.86 16 35 H 0.04 2.54 6.06 -2.39 -0.01 2.53 16 36 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 37 H 0.25 15.95 8.31 -92.71 -0.77 15.18 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 40 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.06 1.45 7.35 -2.39 -0.02 1.43 16 43 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.13 -0.81 8.14 -2.39 -0.02 -0.83 16 46 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.13 -0.78 6.44 -2.39 -0.02 -0.80 16 Total: -1.00 -101.48 379.90 1.61 -99.87 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -0.52 Total: 12.67 kcal Atomic # 6 Polarization: 34.29 SS G_CDS: 6.63 Total: 40.92 kcal Atomic # 7 Polarization: -142.06 SS G_CDS: -7.01 Total: -149.06 kcal Atomic # 8 Polarization: -57.73 SS G_CDS: 0.48 Total: -57.25 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.03 Total: 52.86 kcal Total: -101.48 1.61 -99.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966907765.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.494 kcal (2) G-P(sol) polarization free energy of solvation -101.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds