Wall clock time and date at job start Tue Mar 31 2020 17:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32172 * 119.14235 * 2 1 4 4 C 1.32360 * 120.60629 * 180.31381 * 3 2 1 5 5 C 1.47498 * 120.51349 * 179.69931 * 4 3 2 6 6 O 1.21596 * 120.00395 * 179.72357 * 5 4 3 7 7 N 1.34778 * 119.99803 * 359.71787 * 5 4 3 8 8 C 1.46496 * 120.00023 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.49595 * 324.92871 * 8 7 5 10 10 C 1.53195 * 109.50191 * 85.00129 * 8 7 5 11 11 N 1.46921 * 108.89316 * 174.51765 * 10 8 7 12 12 C 1.36934 * 120.63215 * 126.46549 * 11 10 8 13 13 H 1.07998 * 119.99994 * 331.92264 * 12 11 10 14 14 C 1.38810 * 120.00388 * 151.92430 * 12 11 10 15 15 N 1.31626 * 119.99638 * 343.17136 * 14 12 11 16 16 Si 1.86793 * 120.00463 * 163.16956 * 14 12 11 17 17 H 1.48503 * 109.47141 * 90.00030 * 16 14 12 18 18 H 1.48500 * 109.47595 * 209.99829 * 16 14 12 19 19 H 1.48503 * 109.47257 * 330.00288 * 16 14 12 20 20 C 1.46960 * 118.71677 * 306.63540 * 11 10 8 21 21 C 1.53195 * 108.88519 * 53.35814 * 20 11 10 22 22 C 1.53042 * 109.31422 * 305.44283 * 21 20 11 23 23 H 1.08996 * 109.45805 * 301.34688 * 22 21 20 24 24 C 1.53001 * 109.45787 * 181.38481 * 22 21 20 25 25 C 1.46680 * 118.98043 * 359.41815 * 4 3 2 26 26 O 1.21858 * 120.78627 * 180.29727 * 25 4 3 27 27 N 1.35150 * 118.43118 * 0.28303 * 25 4 3 28 28 H 0.97001 * 120.37377 * 179.97438 * 27 25 4 29 29 C 1.34901 * 119.26165 * 359.97438 * 27 25 4 30 30 C 1.50698 * 119.49820 * 180.02562 * 29 27 25 31 31 H 1.08996 * 109.46957 * 270.29933 * 1 2 3 32 32 H 1.08999 * 109.47099 * 30.29758 * 1 2 3 33 33 H 1.08998 * 109.47025 * 150.29864 * 1 2 3 34 34 H 0.97004 * 120.00286 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.57751 * 294.37214 * 10 8 7 36 36 H 1.08996 * 109.58755 * 54.65331 * 10 8 7 37 37 H 0.97000 * 119.99586 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.46633 * 293.57614 * 20 11 10 39 39 H 1.08996 * 109.71718 * 173.28868 * 20 11 10 40 40 H 1.09004 * 109.49873 * 185.49352 * 21 20 11 41 41 H 1.08996 * 109.49938 * 65.39973 * 21 20 11 42 42 H 1.08997 * 109.47088 * 299.93429 * 24 22 21 43 43 H 1.08999 * 109.47131 * 59.93850 * 24 22 21 44 44 H 1.09000 * 109.46540 * 179.97438 * 24 22 21 45 45 H 1.09003 * 109.47499 * 359.97438 * 30 29 27 46 46 H 1.09001 * 109.47771 * 120.00288 * 30 29 27 47 47 H 1.08999 * 109.47071 * 240.00135 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0062 5 6 4.1900 2.4777 -0.0129 6 8 5.4058 2.4979 -0.0135 7 7 3.4968 3.6335 -0.0184 8 6 4.2080 4.9142 -0.0256 9 1 5.1202 4.8270 0.5646 10 6 4.5653 5.2927 -1.4664 11 7 5.1590 6.6366 -1.4720 12 6 6.3773 6.8587 -2.0562 13 1 7.1044 6.0619 -2.1086 14 6 6.6780 8.1081 -2.5811 15 7 5.7130 8.9701 -2.8224 16 14 8.4520 8.5661 -2.9449 17 1 8.7886 8.1751 -4.3374 18 1 8.6273 10.0322 -2.7864 19 1 9.3506 7.8551 -2.0002 20 6 4.4217 7.7369 -0.8351 21 6 4.0660 7.3310 0.5986 22 6 3.3118 5.9995 0.5754 23 1 2.4111 6.1029 -0.0296 24 6 2.9247 5.6081 2.0030 25 6 4.2171 -0.0763 -0.0001 26 8 5.4357 -0.0835 -0.0002 27 7 3.5185 -1.2333 0.0058 28 1 3.9815 -2.0857 0.0096 29 6 2.1703 -1.1894 0.0065 30 6 1.3860 -2.4763 0.0137 31 1 -0.3633 0.0054 1.0276 32 1 -0.3633 0.8873 -0.5184 33 1 -0.3633 -0.8926 -0.5092 34 1 2.5269 3.6174 -0.0176 35 1 5.2819 4.5750 -1.8656 36 1 3.6641 5.2887 -2.0794 37 1 5.9231 9.8430 -3.1895 38 1 3.5083 7.9348 -1.3962 39 1 5.0414 8.6334 -0.8180 40 1 3.4356 8.0983 1.0482 41 1 4.9795 7.2216 1.1830 42 1 3.8253 5.5041 2.6081 43 1 2.2864 6.3809 2.4311 44 1 2.3872 4.6600 1.9865 45 1 2.0745 -3.3214 0.0172 46 1 0.7587 -2.5146 0.9042 47 1 0.7576 -2.5238 -0.8757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966907766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:48 Heat of formation + Delta-G solvation = -13.511599 kcal Electronic energy + Delta-G solvation = -29458.296213 eV Core-core repulsion = 25448.975234 eV Total energy + Delta-G solvation = -4009.320979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99135 -39.47876 -38.18505 -37.45673 -35.68222 -34.33744 -33.48103 -32.76460 -31.00280 -29.79369 -28.76820 -27.39931 -26.74160 -24.95872 -24.09570 -23.47060 -22.02632 -20.96297 -20.39911 -19.46303 -18.91191 -18.43322 -16.89311 -16.68258 -16.49095 -16.07906 -15.38571 -14.77528 -14.55036 -14.42162 -14.29905 -14.06876 -13.68177 -13.63872 -13.51193 -13.43323 -13.25590 -13.23004 -12.98439 -12.43424 -12.37619 -12.11913 -11.92588 -11.61683 -11.53766 -11.45654 -11.38753 -10.93968 -10.70556 -10.56712 -10.18368 -10.15703 -10.07140 -9.78583 -9.67641 -9.52638 -9.30875 -8.68054 -8.34268 -8.22204 -6.56466 -5.69477 -3.11072 -0.11834 1.40480 2.11129 2.68865 3.27534 3.46486 3.52618 3.58080 3.61481 3.66368 3.92348 3.99917 4.27540 4.60806 4.67493 4.82569 4.88543 5.06705 5.17494 5.23047 5.25424 5.39740 5.48812 5.50787 5.59187 5.69613 5.73807 5.99801 6.00746 6.07222 6.09508 6.17884 6.28555 6.33425 6.40553 6.66830 6.73236 6.79983 6.84700 6.94416 7.12252 7.22323 7.45133 7.51901 7.73872 7.90798 7.92976 8.52416 8.58853 9.31928 9.94164 10.50225 11.39449 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002930 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.004891 B = 9553.008164 C =10447.042984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.031 4.031 3 N -0.354 5.354 4 C 0.019 3.981 5 C 0.574 3.426 6 O -0.503 6.503 7 N -0.700 5.700 8 C 0.133 3.867 9 H 0.088 0.912 10 C 0.141 3.859 11 N -0.587 5.587 12 C -0.247 4.247 13 H 0.066 0.934 14 C 0.001 3.999 15 N -0.905 5.905 16 Si 0.902 3.098 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.168 3.832 21 C -0.133 4.133 22 C -0.090 4.090 23 H 0.068 0.932 24 C -0.144 4.144 25 C 0.494 3.506 26 O -0.479 6.479 27 N -0.587 5.587 28 H 0.420 0.580 29 C 0.149 3.851 30 C -0.127 4.127 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.402 0.598 35 H 0.058 0.942 36 H 0.018 0.982 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.089 0.911 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.767 -22.270 8.898 29.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.157 4.157 3 N -0.071 5.071 4 C -0.151 4.151 5 C 0.357 3.643 6 O -0.375 6.375 7 N -0.352 5.352 8 C 0.028 3.972 9 H 0.106 0.894 10 C 0.014 3.986 11 N -0.310 5.310 12 C -0.377 4.377 13 H 0.084 0.916 14 C -0.197 4.197 15 N -0.550 5.550 16 Si 0.732 3.268 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.042 3.958 21 C -0.173 4.173 22 C -0.109 4.109 23 H 0.086 0.914 24 C -0.202 4.202 25 C 0.286 3.714 26 O -0.349 6.349 27 N -0.223 5.223 28 H 0.260 0.740 29 C 0.034 3.966 30 C -0.184 4.184 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.107 0.893 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -15.594 -21.268 8.818 27.807 hybrid contribution 0.929 -0.988 -0.256 1.380 sum -14.665 -22.256 8.562 27.994 Atomic orbital electron populations 1.20525 0.86954 1.03761 1.03000 1.20109 0.97869 0.85621 1.12096 1.67522 1.08469 1.29512 1.01624 1.24104 0.88759 0.94169 1.08041 1.17027 0.86673 0.82098 0.78532 1.90928 1.12237 1.86275 1.48030 1.45880 1.10453 1.05198 1.73675 1.21812 0.95191 0.79929 1.00271 0.89431 1.21197 0.96688 0.88878 0.91884 1.43985 1.20349 1.02559 1.64089 1.19228 0.90128 0.97340 1.30978 0.91590 1.25016 0.97457 0.98524 0.98683 1.70042 1.30042 1.07831 1.47085 0.86298 0.85047 0.77300 0.78200 1.21456 1.21620 1.20389 1.20839 0.95472 0.92497 0.87000 1.22248 0.98995 0.94454 1.01602 1.21297 0.98353 0.95728 0.95531 0.91372 1.21856 1.01002 1.00439 0.96887 1.19136 0.88499 0.83978 0.79831 1.91083 1.11388 1.85180 1.47268 1.43794 1.06332 1.11997 1.60216 0.73972 1.21518 0.83558 0.98930 0.92631 1.21195 1.00480 0.91452 1.05288 0.90783 0.90075 0.90807 0.76270 0.92315 0.96387 0.93766 0.96334 0.89329 0.92710 0.92405 0.92981 0.93007 0.93248 0.90374 0.88181 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 9.65 36.01 0.35 -0.04 16 2 C -0.03 -0.25 6.70 -83.18 -0.56 -0.81 16 3 N -0.35 -4.15 9.57 -4.85 -0.05 -4.20 16 4 C 0.02 0.28 6.96 -80.46 -0.56 -0.28 16 5 C 0.57 10.54 7.77 -12.49 -0.10 10.44 16 6 O -0.50 -11.51 15.17 -15.19 -0.23 -11.74 16 7 N -0.70 -11.58 4.36 -54.74 -0.24 -11.82 16 8 C 0.13 2.56 2.07 -67.81 -0.14 2.42 16 9 H 0.09 1.92 7.58 -51.93 -0.39 1.53 16 10 C 0.14 3.26 6.09 -3.71 -0.02 3.24 16 11 N -0.59 -15.49 3.00 -172.30 -0.52 -16.01 16 12 C -0.25 -7.20 9.58 -15.06 -0.14 -7.34 16 13 H 0.07 1.95 7.88 -52.49 -0.41 1.53 16 14 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 15 N -0.91 -26.94 11.20 55.49 0.62 -26.32 16 16 Si 0.90 22.75 29.59 -169.99 -5.03 17.72 16 17 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 20 C 0.17 4.07 5.30 -3.69 -0.02 4.05 16 21 C -0.13 -2.56 5.36 -26.61 -0.14 -2.71 16 22 C -0.09 -1.52 2.27 -90.57 -0.21 -1.73 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 24 C -0.14 -2.02 9.02 37.16 0.34 -1.68 16 25 C 0.49 7.10 7.93 -12.68 -0.10 7.00 16 26 O -0.48 -8.98 16.40 -15.43 -0.25 -9.24 16 27 N -0.59 -4.95 5.29 -9.45 -0.05 -5.00 16 28 H 0.42 2.28 8.64 -40.82 -0.35 1.93 16 29 C 0.15 0.92 6.78 -81.98 -0.56 0.36 16 30 C -0.13 -0.16 8.83 36.00 0.32 0.16 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.14 6.43 -51.93 -0.33 -0.19 16 34 H 0.40 5.63 7.66 -40.82 -0.31 5.31 16 35 H 0.06 1.47 7.93 -51.93 -0.41 1.05 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.63 7.35 -51.93 -0.38 0.25 16 45 H 0.08 0.00 7.90 -51.93 -0.41 -0.41 16 46 H 0.10 0.00 8.09 -51.93 -0.42 -0.42 16 47 H 0.10 0.01 7.36 -51.93 -0.38 -0.37 16 LS Contribution 379.61 15.07 5.72 5.72 Total: -1.00 -37.81 379.61 -8.72 -46.53 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.07 Total: 1.32 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -1.63 Total: 13.03 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.23 Total: -63.34 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.48 Total: -20.98 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.03 Total: 17.72 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.81 -8.72 -46.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966907766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.016 kcal (2) G-P(sol) polarization free energy of solvation -37.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds