Wall clock time and date at job start Tue Mar 31 2020 17:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32172 * 119.14235 * 2 1 4 4 C 1.32360 * 120.60629 * 180.31381 * 3 2 1 5 5 C 1.47498 * 120.51349 * 179.69931 * 4 3 2 6 6 O 1.21596 * 120.00395 * 179.72357 * 5 4 3 7 7 N 1.34778 * 119.99803 * 359.71787 * 5 4 3 8 8 C 1.46496 * 120.00023 * 180.02562 * 7 5 4 9 9 H 1.08998 * 109.49595 * 324.92871 * 8 7 5 10 10 C 1.53195 * 109.50191 * 85.00129 * 8 7 5 11 11 N 1.46921 * 108.89316 * 174.51765 * 10 8 7 12 12 C 1.36934 * 120.63215 * 126.46549 * 11 10 8 13 13 H 1.07998 * 119.99994 * 331.92264 * 12 11 10 14 14 C 1.38810 * 120.00388 * 151.92430 * 12 11 10 15 15 N 1.31626 * 119.99638 * 343.17136 * 14 12 11 16 16 Si 1.86793 * 120.00463 * 163.16956 * 14 12 11 17 17 H 1.48503 * 109.47141 * 90.00030 * 16 14 12 18 18 H 1.48500 * 109.47595 * 209.99829 * 16 14 12 19 19 H 1.48503 * 109.47257 * 330.00288 * 16 14 12 20 20 C 1.46960 * 118.71677 * 306.63540 * 11 10 8 21 21 C 1.53195 * 108.88519 * 53.35814 * 20 11 10 22 22 C 1.53042 * 109.31422 * 305.44283 * 21 20 11 23 23 H 1.08996 * 109.45805 * 301.34688 * 22 21 20 24 24 C 1.53001 * 109.45787 * 181.38481 * 22 21 20 25 25 C 1.46680 * 118.98043 * 359.41815 * 4 3 2 26 26 O 1.21858 * 120.78627 * 180.29727 * 25 4 3 27 27 N 1.35150 * 118.43118 * 0.28303 * 25 4 3 28 28 H 0.97001 * 120.37377 * 179.97438 * 27 25 4 29 29 C 1.34901 * 119.26165 * 359.97438 * 27 25 4 30 30 C 1.50698 * 119.49820 * 180.02562 * 29 27 25 31 31 H 1.08996 * 109.46957 * 270.29933 * 1 2 3 32 32 H 1.08999 * 109.47099 * 30.29758 * 1 2 3 33 33 H 1.08998 * 109.47025 * 150.29864 * 1 2 3 34 34 H 0.97004 * 120.00286 * 0.02562 * 7 5 4 35 35 H 1.08998 * 109.57751 * 294.37214 * 10 8 7 36 36 H 1.08996 * 109.58755 * 54.65331 * 10 8 7 37 37 H 0.97000 * 119.99586 * 180.02562 * 15 14 12 38 38 H 1.09000 * 109.46633 * 293.57614 * 20 11 10 39 39 H 1.08996 * 109.71718 * 173.28868 * 20 11 10 40 40 H 1.09004 * 109.49873 * 185.49352 * 21 20 11 41 41 H 1.08996 * 109.49938 * 65.39973 * 21 20 11 42 42 H 1.08997 * 109.47088 * 299.93429 * 24 22 21 43 43 H 1.08999 * 109.47131 * 59.93850 * 24 22 21 44 44 H 1.09000 * 109.46540 * 179.97438 * 24 22 21 45 45 H 1.09003 * 109.47499 * 359.97438 * 30 29 27 46 46 H 1.09001 * 109.47771 * 120.00288 * 30 29 27 47 47 H 1.08999 * 109.47071 * 240.00135 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4738 1.1882 -0.0062 5 6 4.1900 2.4777 -0.0129 6 8 5.4058 2.4979 -0.0135 7 7 3.4968 3.6335 -0.0184 8 6 4.2080 4.9142 -0.0256 9 1 5.1202 4.8270 0.5646 10 6 4.5653 5.2927 -1.4664 11 7 5.1590 6.6366 -1.4720 12 6 6.3773 6.8587 -2.0562 13 1 7.1044 6.0619 -2.1086 14 6 6.6780 8.1081 -2.5811 15 7 5.7130 8.9701 -2.8224 16 14 8.4520 8.5661 -2.9449 17 1 8.7886 8.1751 -4.3374 18 1 8.6273 10.0322 -2.7864 19 1 9.3506 7.8551 -2.0002 20 6 4.4217 7.7369 -0.8351 21 6 4.0660 7.3310 0.5986 22 6 3.3118 5.9995 0.5754 23 1 2.4111 6.1029 -0.0296 24 6 2.9247 5.6081 2.0030 25 6 4.2171 -0.0763 -0.0001 26 8 5.4357 -0.0835 -0.0002 27 7 3.5185 -1.2333 0.0058 28 1 3.9815 -2.0857 0.0096 29 6 2.1703 -1.1894 0.0065 30 6 1.3860 -2.4763 0.0137 31 1 -0.3633 0.0054 1.0276 32 1 -0.3633 0.8873 -0.5184 33 1 -0.3633 -0.8926 -0.5092 34 1 2.5269 3.6174 -0.0176 35 1 5.2819 4.5750 -1.8656 36 1 3.6641 5.2887 -2.0794 37 1 5.9231 9.8430 -3.1895 38 1 3.5083 7.9348 -1.3962 39 1 5.0414 8.6334 -0.8180 40 1 3.4356 8.0983 1.0482 41 1 4.9795 7.2216 1.1830 42 1 3.8253 5.5041 2.6081 43 1 2.2864 6.3809 2.4311 44 1 2.3872 4.6600 1.9865 45 1 2.0745 -3.3214 0.0172 46 1 0.7587 -2.5146 0.9042 47 1 0.7576 -2.5238 -0.8757 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966907766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:46 Heat of formation + Delta-G solvation = -42.549826 kcal Electronic energy + Delta-G solvation = -29459.555405 eV Core-core repulsion = 25448.975234 eV Total energy + Delta-G solvation = -4010.580171 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.88133 -40.93041 -39.29986 -38.97018 -36.59184 -36.16551 -34.52618 -33.98448 -33.04270 -30.86935 -29.82890 -28.95519 -27.76766 -25.94100 -25.58951 -24.74580 -23.41941 -22.69288 -21.70433 -21.07259 -19.85848 -19.43637 -18.72689 -17.97630 -17.38354 -17.24478 -16.91804 -16.63192 -16.00773 -15.68756 -15.34654 -15.16884 -15.06121 -14.96553 -14.90869 -14.51760 -14.17813 -14.06336 -13.85306 -13.79222 -13.57630 -13.21631 -13.13972 -12.79297 -12.74673 -12.69459 -12.66522 -12.40955 -12.36588 -12.30236 -12.03261 -11.96299 -11.69460 -11.50921 -11.27057 -11.22789 -10.61085 -10.53438 -10.13614 -9.08734 -8.69450 -7.91985 -5.37617 -0.96416 0.50994 1.24289 1.42305 1.43039 1.54755 1.56218 2.11624 2.48897 2.55978 2.92738 3.01132 3.21789 3.41733 3.68504 3.73794 3.77455 3.95721 4.01232 4.11830 4.42713 4.49302 4.56138 4.65464 4.66336 4.72619 4.76598 4.91189 4.93284 4.95283 4.98718 5.03009 5.08399 5.09321 5.18292 5.21935 5.22570 5.28633 5.43708 5.46170 5.53118 5.55612 5.61832 5.76943 6.33066 6.36106 6.55536 6.66564 7.11565 7.24351 7.80243 8.31274 9.13940 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.002930 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.004891 B = 9553.008164 C =10447.042984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.049 4.049 3 N -0.337 5.337 4 C -0.062 4.062 5 C 0.573 3.427 6 O -0.567 6.567 7 N -0.687 5.687 8 C 0.150 3.850 9 H 0.054 0.946 10 C 0.146 3.854 11 N -0.606 5.606 12 C -0.270 4.270 13 H 0.048 0.952 14 C -0.042 4.042 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.283 1.283 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.173 3.827 21 C -0.122 4.122 22 C -0.081 4.081 23 H 0.083 0.917 24 C -0.134 4.134 25 C 0.488 3.512 26 O -0.544 6.544 27 N -0.564 5.564 28 H 0.438 0.562 29 C 0.200 3.800 30 C -0.130 4.130 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.417 0.583 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.254 0.746 38 H 0.007 0.993 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.969 -25.333 10.092 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.180 4.180 3 N -0.054 5.054 4 C -0.222 4.222 5 C 0.359 3.641 6 O -0.444 6.444 7 N -0.339 5.339 8 C 0.043 3.957 9 H 0.072 0.928 10 C 0.018 3.982 11 N -0.330 5.330 12 C -0.401 4.401 13 H 0.066 0.934 14 C -0.238 4.238 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.210 1.210 18 H -0.206 1.206 19 H -0.204 1.204 20 C 0.048 3.952 21 C -0.162 4.162 22 C -0.100 4.100 23 H 0.101 0.899 24 C -0.191 4.191 25 C 0.283 3.717 26 O -0.421 6.421 27 N -0.198 5.198 28 H 0.281 0.719 29 C 0.081 3.919 30 C -0.187 4.187 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.255 0.745 35 H 0.042 0.958 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.149 0.851 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.828 -24.323 10.027 32.944 hybrid contribution 1.915 -0.405 -0.678 2.072 sum -17.913 -24.728 9.348 31.934 Atomic orbital electron populations 1.20714 0.83556 1.05239 1.04506 1.21030 0.99899 0.85123 1.11952 1.67412 1.06978 1.31886 0.99168 1.23045 0.89659 0.92450 1.17078 1.17575 0.86189 0.83612 0.76697 1.90871 1.15040 1.87395 1.51114 1.45600 1.10840 1.03972 1.73522 1.21325 0.95219 0.82186 0.96927 0.92762 1.21186 0.95480 0.86895 0.94597 1.44203 1.20093 1.04057 1.64628 1.19360 0.91290 0.97509 1.31912 0.93430 1.25718 1.01326 0.98161 0.98565 1.70164 1.31693 1.07951 1.47450 0.85313 0.80267 0.77174 0.77913 1.20965 1.20601 1.20391 1.20732 0.93840 0.90893 0.89765 1.22088 0.99512 0.96722 0.97828 1.21232 0.97634 0.93211 0.97930 0.89899 1.21763 1.01188 1.02099 0.94085 1.19107 0.87855 0.85251 0.79494 1.91036 1.13837 1.86165 1.51036 1.43756 1.07491 1.11371 1.57228 0.71866 1.22586 0.82386 1.01191 0.85733 1.21613 1.00860 0.88428 1.07816 0.89169 0.91029 0.87055 0.74529 0.95755 0.96044 0.93727 0.97477 0.92515 0.89366 0.93618 0.93969 0.90320 0.91707 0.88200 0.85062 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 9.65 71.24 0.69 0.38 16 2 C -0.05 -0.61 6.70 42.03 0.28 -0.33 16 3 N -0.34 -7.56 9.57 -169.24 -1.62 -9.18 16 4 C -0.06 -1.93 6.96 43.71 0.30 -1.63 16 5 C 0.57 23.02 7.77 86.68 0.67 23.69 16 6 O -0.57 -29.10 15.17 15.56 0.24 -28.86 16 7 N -0.69 -24.07 4.36 -445.36 -1.94 -26.01 16 8 C 0.15 6.14 2.07 45.07 0.09 6.23 16 9 H 0.05 2.61 7.58 -2.39 -0.02 2.59 16 10 C 0.15 7.25 6.09 86.36 0.53 7.78 16 11 N -0.61 -34.03 3.00 -699.03 -2.10 -36.13 16 12 C -0.27 -16.76 9.58 84.03 0.81 -15.96 16 13 H 0.05 3.05 7.88 -2.91 -0.02 3.02 16 14 C -0.04 -2.51 4.92 84.86 0.42 -2.09 16 15 N -0.93 -57.01 11.20 21.65 0.24 -56.77 16 16 Si 0.97 48.51 29.59 68.60 2.03 50.54 16 17 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 18 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 20 C 0.17 8.73 5.30 86.36 0.46 9.19 16 21 C -0.12 -4.73 5.36 30.67 0.16 -4.56 16 22 C -0.08 -2.72 2.27 -10.76 -0.02 -2.74 16 23 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 24 C -0.13 -3.50 9.02 71.98 0.65 -2.85 16 25 C 0.49 14.67 7.93 86.39 0.68 15.35 16 26 O -0.54 -22.30 16.40 14.72 0.24 -22.06 16 27 N -0.56 -8.31 5.29 -301.76 -1.60 -9.90 16 28 H 0.44 3.58 8.64 -92.71 -0.80 2.78 16 29 C 0.20 1.54 6.78 41.61 0.28 1.82 16 30 C -0.13 0.64 8.83 71.24 0.63 1.27 16 31 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.11 -0.39 6.43 -2.39 -0.02 -0.41 16 34 H 0.42 11.79 7.66 -92.71 -0.71 11.08 16 35 H 0.02 1.33 7.93 -2.39 -0.02 1.31 16 36 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.06 3.21 6.07 -2.39 -0.01 3.19 16 40 H 0.09 2.84 8.14 -2.38 -0.02 2.82 16 41 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.51 7.35 -2.39 -0.02 1.49 16 45 H 0.10 -0.74 7.90 -2.39 -0.02 -0.76 16 46 H 0.13 -1.11 8.09 -2.39 -0.02 -1.13 16 47 H 0.13 -1.09 7.36 -2.39 -0.02 -1.10 16 Total: -1.00 -95.52 379.61 1.63 -93.89 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -0.50 Total: 8.94 kcal Atomic # 6 Polarization: 28.91 SS G_CDS: 6.63 Total: 35.54 kcal Atomic # 7 Polarization: -130.97 SS G_CDS: -7.01 Total: -137.99 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: 0.48 Total: -50.92 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -95.52 1.63 -93.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966907766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.342 kcal (2) G-P(sol) polarization free energy of solvation -95.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds