Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34479 * 126.83789 * 2 1 4 4 N 1.36441 * 108.85858 * 180.02562 * 3 2 1 5 5 H 0.97006 * 124.85179 * 179.97438 * 4 3 2 6 6 C 1.34663 * 110.29913 * 359.75264 * 4 3 2 7 7 C 1.50702 * 125.80448 * 180.29729 * 6 4 3 8 8 C 1.50701 * 109.46777 * 265.13104 * 7 6 4 9 9 N 1.34775 * 119.99987 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00200 * 0.02562 * 8 7 6 11 11 C 1.36767 * 108.39381 * 0.40551 * 6 4 3 12 12 C 1.47261 * 126.94184 * 179.86882 * 11 6 4 13 13 O 1.21626 * 120.00096 * 269.70838 * 12 11 6 14 14 N 1.34781 * 119.99942 * 89.71284 * 12 11 6 15 15 C 1.46494 * 119.99863 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.47696 * 325.00099 * 15 14 12 17 17 C 1.53001 * 109.47105 * 85.00356 * 15 14 12 18 18 C 1.53000 * 109.46935 * 204.99806 * 15 14 12 19 19 C 1.53498 * 114.20476 * 180.02562 * 18 15 14 20 20 N 1.47072 * 87.98531 * 87.52370 * 19 18 15 21 21 C 1.36937 * 136.05474 * 207.08946 * 20 19 18 22 22 H 1.07997 * 120.00175 * 6.65345 * 21 20 19 23 23 C 1.38812 * 119.99799 * 186.65772 * 21 20 19 24 24 N 1.31617 * 119.99791 * 6.44001 * 23 21 20 25 25 Si 1.86796 * 120.00183 * 186.44246 * 23 21 20 26 26 H 1.48498 * 109.47075 * 265.01704 * 25 23 21 27 27 H 1.48500 * 109.46850 * 25.01427 * 25 23 21 28 28 H 1.48496 * 109.47374 * 145.01871 * 25 23 21 29 29 C 1.47066 * 87.88224 * 27.34172 * 20 19 18 30 30 H 1.09000 * 109.47131 * 269.97521 * 1 2 3 31 31 H 1.09004 * 109.46673 * 29.97178 * 1 2 3 32 32 H 1.08998 * 109.47360 * 149.96876 * 1 2 3 33 33 H 1.08007 * 125.56884 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.47064 * 25.12859 * 7 6 4 35 35 H 1.08995 * 109.47110 * 145.13439 * 7 6 4 36 36 H 0.96998 * 119.99863 * 359.97438 * 9 8 7 37 37 H 0.96998 * 120.00284 * 180.02562 * 9 8 7 38 38 H 0.97005 * 119.99757 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47240 * 59.99280 * 17 15 14 40 40 H 1.08995 * 109.47689 * 179.97438 * 17 15 14 41 41 H 1.08999 * 109.46965 * 299.99998 * 17 15 14 42 42 H 1.08994 * 113.41432 * 46.80672 * 18 15 14 43 43 H 1.09000 * 113.47213 * 332.73897 * 19 18 15 44 44 H 1.09002 * 113.52190 * 202.30784 * 19 18 15 45 45 H 0.97000 * 119.99892 * 179.97438 * 24 23 21 46 46 H 1.09000 * 113.46757 * 87.44265 * 29 20 19 47 47 H 1.08999 * 113.46471 * 217.87772 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0006 5 1 4.3841 1.2412 -0.0011 6 6 3.6656 -0.6904 0.0045 7 6 4.9225 -1.5218 0.0119 8 6 5.2798 -1.9046 -1.4012 9 7 6.3740 -2.6544 -1.6401 10 8 4.5827 -1.5380 -2.3236 11 6 2.3864 -1.1742 -0.0007 12 6 1.9749 -2.5881 -0.0006 13 8 1.8046 -3.1720 -1.0538 14 7 1.7868 -3.2351 1.1667 15 6 1.3769 -4.6416 1.1668 16 1 0.7090 -4.8255 0.3254 17 6 2.6138 -5.5333 1.0406 18 6 0.6496 -4.9607 2.4745 19 6 0.1707 -6.4145 2.5898 20 7 1.4891 -6.7498 3.1487 21 6 2.2840 -7.8637 3.1997 22 1 2.0038 -8.7525 2.6540 23 6 3.4497 -7.8505 3.9531 24 7 3.7272 -6.8160 4.7181 25 14 4.6248 -9.3008 3.8813 26 1 4.3318 -10.2311 5.0011 27 1 4.4544 -10.0123 2.5891 28 1 6.0222 -8.8119 3.9967 29 6 1.5752 -5.3642 3.6340 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 1.9868 2.1058 0.0004 34 1 5.7373 -0.9447 0.4491 35 1 4.7583 -2.4233 0.6020 36 1 6.9317 -2.9473 -0.9025 37 1 6.6042 -2.9005 -2.5496 38 1 1.9222 -2.7693 2.0068 39 1 3.2818 -5.3494 1.8821 40 1 2.3089 -6.5797 1.0411 41 1 3.1320 -5.3059 0.1090 42 1 -0.1028 -4.2194 2.7437 43 1 -0.0247 -6.8849 1.6261 44 1 -0.6475 -6.5482 3.2975 45 1 4.5416 -6.8069 5.2448 46 1 1.1274 -5.2201 4.6173 47 1 2.5764 -4.9399 3.5599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970459146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = 29.035842 kcal Electronic energy + Delta-G solvation = -29828.037618 eV Core-core repulsion = 25820.561635 eV Total energy + Delta-G solvation = -4007.475983 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.37884 -39.41105 -39.19271 -38.02369 -34.16435 -33.76322 -32.84832 -32.18810 -31.68527 -29.62519 -28.05560 -27.64600 -25.96716 -24.67001 -24.21080 -22.79176 -21.28650 -20.81675 -19.44814 -19.29788 -18.28564 -17.92995 -17.10607 -16.75884 -16.68469 -16.10068 -15.57559 -15.16606 -14.88169 -14.48116 -14.42935 -14.17328 -13.81116 -13.64000 -13.47034 -13.30168 -12.96866 -12.65935 -12.57862 -12.52185 -12.26961 -12.06542 -11.73402 -11.29702 -11.10294 -11.07984 -10.93374 -10.75064 -10.55519 -10.32355 -10.09145 -9.85196 -9.76788 -9.66824 -9.52301 -9.10554 -8.70762 -8.49242 -8.46161 -8.13286 -6.80576 -5.78541 -3.07718 2.04937 2.57110 2.61175 3.01888 3.13137 3.37425 3.44006 3.45156 3.55269 3.81506 4.42703 4.46577 4.76009 4.90960 5.02352 5.19072 5.28815 5.33386 5.38402 5.40644 5.44065 5.52256 5.65349 5.77497 5.95365 6.02189 6.05169 6.17605 6.23987 6.38006 6.51080 6.56168 6.66859 6.70752 6.79441 6.81167 6.83557 6.96588 7.10337 7.18524 7.23511 7.32431 7.45154 7.49309 7.57508 7.97007 8.05934 8.18297 8.74952 9.04256 9.70715 10.66790 11.40023 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.003656 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.269895 B = 7657.558442 C = 8947.152134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.133 4.133 3 C -0.011 4.011 4 N -0.547 5.547 5 H 0.412 0.588 6 C 0.082 3.918 7 C -0.082 4.082 8 C 0.516 3.484 9 N -0.857 5.857 10 O -0.520 6.520 11 C -0.190 4.190 12 C 0.588 3.412 13 O -0.536 6.536 14 N -0.714 5.714 15 C 0.175 3.825 16 H 0.075 0.925 17 C -0.144 4.144 18 C -0.160 4.160 19 C 0.124 3.876 20 N -0.603 5.603 21 C -0.211 4.211 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.280 1.280 28 H -0.291 1.291 29 C 0.166 3.834 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.167 0.833 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.402 0.598 37 H 0.402 0.598 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.026 0.974 42 H 0.071 0.929 43 H 0.041 0.959 44 H 0.034 0.966 45 H 0.252 0.748 46 H 0.026 0.974 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 17.259 -6.406 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.139 4.139 3 C -0.139 4.139 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.034 4.034 7 C -0.123 4.123 8 C 0.299 3.701 9 N -0.422 5.422 10 O -0.395 6.395 11 C -0.200 4.200 12 C 0.373 3.627 13 O -0.412 6.412 14 N -0.364 5.364 15 C 0.071 3.929 16 H 0.093 0.907 17 C -0.202 4.202 18 C -0.180 4.180 19 C -0.002 4.002 20 N -0.329 5.329 21 C -0.339 4.339 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.566 5.566 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.205 1.205 28 H -0.217 1.217 29 C 0.040 3.960 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.230 0.770 37 H 0.233 0.767 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.045 0.955 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.005 17.029 -7.553 18.736 hybrid contribution 1.498 -0.589 0.714 1.761 sum 3.502 16.440 -6.839 18.147 Atomic orbital electron populations 1.20129 0.89683 1.02307 1.01686 1.20399 0.95128 0.90429 1.07992 1.21398 0.82187 0.98894 1.11439 1.41210 1.08146 1.05686 1.59074 0.75166 1.19108 0.93946 0.83133 1.07175 1.20240 0.94944 1.01292 0.95793 1.20403 0.80346 0.78132 0.91193 1.43810 1.29004 1.56515 1.12850 1.90820 1.49497 1.53396 1.45737 1.20069 0.92227 0.92917 1.14810 1.17450 0.76740 0.84777 0.83780 1.90791 1.50730 1.68149 1.31519 1.46209 1.69295 1.12864 1.08054 1.20535 0.96617 0.79172 0.96536 0.90667 1.22137 0.97042 1.01194 0.99844 1.23361 0.99854 0.97751 0.97043 1.22367 0.90077 0.90999 0.96791 1.45758 1.14160 1.08528 1.64450 1.18890 1.00301 0.90833 1.23849 0.90281 1.24733 0.99057 0.97908 0.98448 1.69845 1.26119 1.30039 1.30618 0.86199 0.80645 0.81886 0.77684 1.21785 1.20532 1.21737 1.22072 0.97070 0.85030 0.91816 0.91688 0.91971 0.91753 0.81533 0.87768 0.86178 0.77008 0.76732 0.76853 0.91275 0.89603 0.95451 0.91120 0.94046 0.94871 0.93833 0.95623 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.35 36.01 0.37 -0.53 16 2 C -0.13 -1.72 6.36 -102.54 -0.65 -2.38 16 3 C -0.01 -0.11 11.82 -16.83 -0.20 -0.31 16 4 N -0.55 -5.34 5.90 -9.11 -0.05 -5.39 16 5 H 0.41 2.58 8.96 -40.82 -0.37 2.21 16 6 C 0.08 1.04 5.67 -81.88 -0.46 0.57 16 7 C -0.08 -0.86 6.01 -29.03 -0.17 -1.04 16 8 C 0.52 6.63 8.09 -10.99 -0.09 6.54 16 9 N -0.86 -7.65 8.87 31.22 0.28 -7.37 16 10 O -0.52 -9.30 16.87 5.55 0.09 -9.21 16 11 C -0.19 -2.89 6.05 -103.35 -0.62 -3.51 16 12 C 0.59 10.41 7.26 -12.59 -0.09 10.32 16 13 O -0.54 -11.80 16.77 5.25 0.09 -11.71 16 14 N -0.71 -11.53 5.07 -54.94 -0.28 -11.80 16 15 C 0.17 3.18 2.76 -67.93 -0.19 2.99 16 16 H 0.08 1.45 7.58 -51.93 -0.39 1.06 16 17 C -0.14 -2.95 8.06 37.16 0.30 -2.65 16 18 C -0.16 -2.88 4.25 -89.97 -0.38 -3.26 16 19 C 0.12 2.49 7.86 -8.51 -0.07 2.42 16 20 N -0.60 -14.53 2.16 -184.59 -0.40 -14.93 16 21 C -0.21 -5.64 9.57 -15.06 -0.14 -5.78 16 22 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 23 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 24 N -0.92 -25.96 11.81 55.49 0.66 -25.31 16 25 Si 0.91 21.51 29.56 -169.99 -5.02 16.49 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 C 0.17 3.64 6.22 -8.38 -0.05 3.58 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.17 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.12 1.32 8.05 -51.93 -0.42 0.90 16 36 H 0.40 2.37 8.83 -40.82 -0.36 2.01 16 37 H 0.40 3.33 8.93 -40.82 -0.36 2.97 16 38 H 0.40 5.70 8.59 -40.82 -0.35 5.35 16 39 H 0.07 1.54 6.32 -51.93 -0.33 1.22 16 40 H 0.09 1.94 5.93 -51.93 -0.31 1.63 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.80 8.12 -51.93 -0.42 0.38 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.51 6.17 -51.93 -0.32 1.19 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -37.42 390.97 -8.28 -45.70 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -6.98 Total: 10.90 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: -2.55 Total: 6.75 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.20 Total: -64.81 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.18 Total: -20.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.42 -8.28 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970459146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.740 kcal (2) G-P(sol) polarization free energy of solvation -37.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds