Wall clock time and date at job start Tue Mar 31 2020 18:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34479 * 126.83789 * 2 1 4 4 N 1.36441 * 108.85858 * 180.02562 * 3 2 1 5 5 H 0.97006 * 124.85179 * 179.97438 * 4 3 2 6 6 C 1.34663 * 110.29913 * 359.75264 * 4 3 2 7 7 C 1.50702 * 125.80448 * 180.29729 * 6 4 3 8 8 C 1.50701 * 109.46777 * 265.13104 * 7 6 4 9 9 N 1.34775 * 119.99987 * 180.02562 * 8 7 6 10 10 O 1.21288 * 120.00200 * 0.02562 * 8 7 6 11 11 C 1.36767 * 108.39381 * 0.40551 * 6 4 3 12 12 C 1.47261 * 126.94184 * 179.86882 * 11 6 4 13 13 O 1.21626 * 120.00096 * 269.70838 * 12 11 6 14 14 N 1.34781 * 119.99942 * 89.71284 * 12 11 6 15 15 C 1.46494 * 119.99863 * 179.97438 * 14 12 11 16 16 H 1.08995 * 109.47696 * 325.00099 * 15 14 12 17 17 C 1.53001 * 109.47105 * 85.00356 * 15 14 12 18 18 C 1.53000 * 109.46935 * 204.99806 * 15 14 12 19 19 C 1.53498 * 114.20476 * 180.02562 * 18 15 14 20 20 N 1.47072 * 87.98531 * 87.52370 * 19 18 15 21 21 C 1.36937 * 136.05474 * 207.08946 * 20 19 18 22 22 H 1.07997 * 120.00175 * 6.65345 * 21 20 19 23 23 C 1.38812 * 119.99799 * 186.65772 * 21 20 19 24 24 N 1.31617 * 119.99791 * 6.44001 * 23 21 20 25 25 Si 1.86796 * 120.00183 * 186.44246 * 23 21 20 26 26 H 1.48498 * 109.47075 * 265.01704 * 25 23 21 27 27 H 1.48500 * 109.46850 * 25.01427 * 25 23 21 28 28 H 1.48496 * 109.47374 * 145.01871 * 25 23 21 29 29 C 1.47066 * 87.88224 * 27.34172 * 20 19 18 30 30 H 1.09000 * 109.47131 * 269.97521 * 1 2 3 31 31 H 1.09004 * 109.46673 * 29.97178 * 1 2 3 32 32 H 1.08998 * 109.47360 * 149.96876 * 1 2 3 33 33 H 1.08007 * 125.56884 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.47064 * 25.12859 * 7 6 4 35 35 H 1.08995 * 109.47110 * 145.13439 * 7 6 4 36 36 H 0.96998 * 119.99863 * 359.97438 * 9 8 7 37 37 H 0.96998 * 120.00284 * 180.02562 * 9 8 7 38 38 H 0.97005 * 119.99757 * 0.02562 * 14 12 11 39 39 H 1.09004 * 109.47240 * 59.99280 * 17 15 14 40 40 H 1.08995 * 109.47689 * 179.97438 * 17 15 14 41 41 H 1.08999 * 109.46965 * 299.99998 * 17 15 14 42 42 H 1.08994 * 113.41432 * 46.80672 * 18 15 14 43 43 H 1.09000 * 113.47213 * 332.73897 * 19 18 15 44 44 H 1.09002 * 113.52190 * 202.30784 * 19 18 15 45 45 H 0.97000 * 119.99892 * 179.97438 * 24 23 21 46 46 H 1.09000 * 113.46757 * 87.44265 * 29 20 19 47 47 H 1.08999 * 113.46471 * 217.87772 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0006 5 1 4.3841 1.2412 -0.0011 6 6 3.6656 -0.6904 0.0045 7 6 4.9225 -1.5218 0.0119 8 6 5.2798 -1.9046 -1.4012 9 7 6.3740 -2.6544 -1.6401 10 8 4.5827 -1.5380 -2.3236 11 6 2.3864 -1.1742 -0.0007 12 6 1.9749 -2.5881 -0.0006 13 8 1.8046 -3.1720 -1.0538 14 7 1.7868 -3.2351 1.1667 15 6 1.3769 -4.6416 1.1668 16 1 0.7090 -4.8255 0.3254 17 6 2.6138 -5.5333 1.0406 18 6 0.6496 -4.9607 2.4745 19 6 0.1707 -6.4145 2.5898 20 7 1.4891 -6.7498 3.1487 21 6 2.2840 -7.8637 3.1997 22 1 2.0038 -8.7525 2.6540 23 6 3.4497 -7.8505 3.9531 24 7 3.7272 -6.8160 4.7181 25 14 4.6248 -9.3008 3.8813 26 1 4.3318 -10.2311 5.0011 27 1 4.4544 -10.0123 2.5891 28 1 6.0222 -8.8119 3.9967 29 6 1.5752 -5.3642 3.6340 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5143 33 1 1.9868 2.1058 0.0004 34 1 5.7373 -0.9447 0.4491 35 1 4.7583 -2.4233 0.6020 36 1 6.9317 -2.9473 -0.9025 37 1 6.6042 -2.9005 -2.5496 38 1 1.9222 -2.7693 2.0068 39 1 3.2818 -5.3494 1.8821 40 1 2.3089 -6.5797 1.0411 41 1 3.1320 -5.3059 0.1090 42 1 -0.1028 -4.2194 2.7437 43 1 -0.0247 -6.8849 1.6261 44 1 -0.6475 -6.5482 3.2975 45 1 4.5416 -6.8069 5.2448 46 1 1.1274 -5.2201 4.6173 47 1 2.5764 -4.9399 3.5599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970459146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:31 Heat of formation + Delta-G solvation = -0.033610 kcal Electronic energy + Delta-G solvation = -29829.298164 eV Core-core repulsion = 25820.561635 eV Total energy + Delta-G solvation = -4008.736529 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.29977 -40.96481 -40.20246 -39.56367 -35.74779 -34.72172 -34.12754 -33.70253 -32.69668 -31.08835 -29.58737 -29.02865 -26.81231 -26.39834 -25.94189 -24.21322 -22.64973 -21.97195 -20.69965 -20.30069 -19.73340 -18.88548 -18.59215 -18.00415 -17.60887 -17.32620 -17.07293 -16.84474 -16.30302 -15.91012 -15.70299 -15.48968 -15.34149 -14.79120 -14.55349 -14.46174 -14.19589 -14.03659 -13.82575 -13.51014 -13.46310 -13.36495 -13.03018 -12.97454 -12.89897 -12.73754 -12.54625 -12.36811 -12.15342 -12.06801 -11.63562 -11.47568 -11.16104 -11.07342 -10.80897 -10.67587 -10.67081 -9.96764 -9.43175 -9.00091 -8.75523 -7.84642 -5.13094 1.12006 1.47757 1.48980 1.57236 1.60344 1.69920 1.71202 2.20908 2.52166 2.57728 2.74223 3.38896 3.57047 3.58972 3.75791 3.92426 4.01670 4.12883 4.20236 4.29628 4.41675 4.42119 4.56805 4.59599 4.73248 4.74391 4.87919 4.90724 4.95941 5.05100 5.05977 5.13349 5.18049 5.20307 5.31417 5.35040 5.55535 5.57594 5.68916 5.77666 5.86400 5.89528 6.00354 6.06974 6.40859 6.71645 6.76376 7.00252 7.31972 7.39563 7.68194 8.70771 9.34016 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.003656 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.269895 B = 7657.558442 C = 8947.152134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.164 4.164 3 C 0.009 3.991 4 N -0.531 5.531 5 H 0.431 0.569 6 C 0.081 3.919 7 C -0.081 4.081 8 C 0.510 3.490 9 N -0.839 5.839 10 O -0.578 6.578 11 C -0.234 4.234 12 C 0.593 3.407 13 O -0.587 6.587 14 N -0.700 5.700 15 C 0.183 3.817 16 H 0.068 0.932 17 C -0.124 4.124 18 C -0.128 4.128 19 C 0.122 3.878 20 N -0.627 5.627 21 C -0.216 4.216 22 H 0.077 0.923 23 C -0.054 4.054 24 N -0.946 5.946 25 Si 0.962 3.038 26 H -0.292 1.292 27 H -0.273 1.273 28 H -0.293 1.293 29 C 0.168 3.832 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.035 0.965 33 H 0.208 0.792 34 H 0.151 0.849 35 H 0.113 0.887 36 H 0.418 0.582 37 H 0.406 0.594 38 H 0.409 0.591 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.020 0.980 42 H 0.106 0.894 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.247 0.753 46 H 0.018 0.982 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 19.249 -6.010 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.170 4.170 3 C -0.121 4.121 4 N -0.127 5.127 5 H 0.271 0.729 6 C -0.037 4.037 7 C -0.122 4.122 8 C 0.295 3.705 9 N -0.404 5.404 10 O -0.457 6.457 11 C -0.244 4.244 12 C 0.381 3.619 13 O -0.467 6.467 14 N -0.351 5.351 15 C 0.079 3.921 16 H 0.087 0.913 17 C -0.182 4.182 18 C -0.148 4.148 19 C -0.004 4.004 20 N -0.354 5.354 21 C -0.344 4.344 22 H 0.095 0.905 23 C -0.248 4.248 24 N -0.595 5.595 25 Si 0.792 3.208 26 H -0.219 1.219 27 H -0.198 1.198 28 H -0.219 1.219 29 C 0.042 3.958 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.225 0.775 34 H 0.169 0.831 35 H 0.131 0.869 36 H 0.249 0.751 37 H 0.237 0.763 38 H 0.245 0.755 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.039 0.961 42 H 0.124 0.876 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.036 0.964 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.363 19.027 -7.117 20.452 hybrid contribution 1.403 -1.201 0.564 1.931 sum 3.766 17.827 -6.553 19.363 Atomic orbital electron populations 1.20117 0.89039 1.01944 1.02311 1.20710 0.96031 0.90468 1.09829 1.21979 0.81656 0.99954 1.08473 1.41240 1.09049 1.04914 1.57480 0.72887 1.19286 0.93722 0.84470 1.06209 1.20335 0.95875 1.01548 0.94402 1.20833 0.80337 0.77821 0.91526 1.43700 1.27963 1.54868 1.13855 1.90794 1.51530 1.55949 1.47466 1.20070 0.94272 0.91854 1.18248 1.17871 0.75289 0.85807 0.82958 1.90754 1.53073 1.69605 1.33271 1.46036 1.68672 1.11845 1.08511 1.20295 0.95368 0.80019 0.96425 0.91347 1.21880 0.97537 1.00336 0.98446 1.23114 0.99024 0.97681 0.94975 1.22541 0.88850 0.91935 0.97065 1.45999 1.15906 1.08675 1.64786 1.19139 1.00804 0.91492 1.23012 0.90546 1.25364 1.00501 1.00155 0.98785 1.69980 1.26333 1.31585 1.31598 0.85300 0.78594 0.79289 0.77627 1.21913 1.19843 1.21945 1.22015 0.96756 0.84277 0.92708 0.90546 0.89799 0.94599 0.77484 0.83106 0.86864 0.75068 0.76280 0.75503 0.93297 0.91795 0.96127 0.87629 0.93495 0.93273 0.94403 0.96446 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.35 71.24 0.74 -0.90 16 2 C -0.16 -4.02 6.36 -18.51 -0.12 -4.14 16 3 C 0.01 0.15 11.82 83.12 0.98 1.13 16 4 N -0.53 -8.83 5.90 -182.72 -1.08 -9.91 16 5 H 0.43 3.81 8.96 -92.70 -0.83 2.98 16 6 C 0.08 1.92 5.67 41.78 0.24 2.16 16 7 C -0.08 -1.59 6.01 29.10 0.17 -1.42 16 8 C 0.51 12.82 8.09 87.66 0.71 13.53 16 9 N -0.84 -14.14 8.87 -173.53 -1.54 -15.68 16 10 O -0.58 -20.95 16.87 -3.05 -0.05 -21.00 16 11 C -0.23 -7.01 6.05 -19.04 -0.12 -7.13 16 12 C 0.59 21.38 7.26 86.61 0.63 22.01 16 13 O -0.59 -26.82 16.77 -4.11 -0.07 -26.89 16 14 N -0.70 -22.56 5.07 -445.96 -2.26 -24.82 16 15 C 0.18 6.66 2.76 44.99 0.12 6.79 16 16 H 0.07 2.66 7.58 -2.39 -0.02 2.64 16 17 C -0.12 -5.19 8.06 71.98 0.58 -4.61 16 18 C -0.13 -4.46 4.25 -10.37 -0.04 -4.51 16 19 C 0.12 4.75 7.86 83.18 0.65 5.40 16 20 N -0.63 -30.32 2.16 -737.93 -1.60 -31.91 16 21 C -0.22 -11.64 9.57 84.03 0.80 -10.83 16 22 H 0.08 4.04 7.84 -2.91 -0.02 4.02 16 23 C -0.05 -2.97 5.50 84.86 0.47 -2.51 16 24 N -0.95 -54.19 11.81 21.65 0.26 -53.93 16 25 Si 0.96 44.62 29.56 68.60 2.03 46.65 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 C 0.17 7.34 6.22 83.26 0.52 7.86 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.21 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.15 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 2.40 8.05 -2.39 -0.02 2.38 16 36 H 0.42 4.25 8.83 -92.71 -0.82 3.43 16 37 H 0.41 6.46 8.93 -92.71 -0.83 5.63 16 38 H 0.41 11.44 8.59 -92.70 -0.80 10.64 16 39 H 0.05 2.24 6.32 -2.38 -0.02 2.22 16 40 H 0.06 2.95 5.93 -2.39 -0.01 2.94 16 41 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.05 1.78 8.12 -2.39 -0.02 1.76 16 44 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.04 2.09 6.17 -2.39 -0.01 2.07 16 Total: -1.00 -84.69 390.97 -0.20 -84.89 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: -2.23 Total: 29.79 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.34 Total: 22.84 kcal Atomic # 7 Polarization: -130.04 SS G_CDS: -6.22 Total: -136.27 kcal Atomic # 8 Polarization: -47.78 SS G_CDS: -0.12 Total: -47.90 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -84.69 -0.20 -84.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970459146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.854 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds