Wall clock time and date at job start Tue Mar 31 2020 18:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34482 * 126.83895 * 2 1 4 4 N 1.36440 * 108.85985 * 180.25156 * 3 2 1 5 5 H 0.96994 * 124.85698 * 179.77118 * 4 3 2 6 6 C 1.34664 * 110.29782 * 359.75085 * 4 3 2 7 7 C 1.50698 * 125.80095 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46816 * 264.97112 * 7 6 4 9 9 N 1.34781 * 119.99830 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00241 * 359.97438 * 8 7 6 11 11 C 1.36774 * 108.39393 * 359.97438 * 6 4 3 12 12 C 1.47266 * 126.93817 * 179.97438 * 11 6 4 13 13 O 1.21622 * 119.99792 * 90.00570 * 12 11 6 14 14 N 1.34777 * 120.00144 * 269.99935 * 12 11 6 15 15 C 1.46497 * 120.00376 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.46725 * 35.00314 * 15 14 12 17 17 C 1.52997 * 109.47188 * 275.00479 * 15 14 12 18 18 C 1.52992 * 109.47081 * 155.00022 * 15 14 12 19 19 C 1.53953 * 113.74647 * 278.74078 * 18 15 14 20 20 N 1.47803 * 86.03866 * 222.08719 * 19 18 15 21 21 C 1.36940 * 134.45480 * 204.64597 * 20 19 18 22 22 H 1.08004 * 120.00062 * 179.86839 * 21 20 19 23 23 C 1.38806 * 119.99897 * 359.86583 * 21 20 19 24 24 N 1.31618 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86812 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47081 * 59.99985 * 25 23 21 27 27 H 1.48495 * 109.46849 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46925 * 299.99870 * 25 23 21 29 29 C 1.47580 * 91.05616 * 24.54814 * 20 19 18 30 30 H 1.08998 * 109.47569 * 270.15019 * 1 2 3 31 31 H 1.09002 * 109.47201 * 30.15106 * 1 2 3 32 32 H 1.08999 * 109.47326 * 150.14764 * 1 2 3 33 33 H 1.08005 * 125.56764 * 0.04021 * 3 2 1 34 34 H 1.08993 * 109.47691 * 24.97082 * 7 6 4 35 35 H 1.09000 * 109.47090 * 144.97298 * 7 6 4 36 36 H 0.96992 * 120.00268 * 0.02562 * 9 8 7 37 37 H 0.97003 * 119.99493 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99702 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47153 * 299.99573 * 17 15 14 40 40 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.47261 * 59.99745 * 17 15 14 42 42 H 1.08997 * 112.94423 * 50.33745 * 18 15 14 43 43 H 1.08999 * 113.76379 * 336.35463 * 19 18 15 44 44 H 1.09004 * 113.76409 * 107.74717 * 19 18 15 45 45 H 0.96996 * 120.00162 * 180.02562 * 24 23 21 46 46 H 1.08999 * 113.77170 * 221.15419 * 29 20 19 47 47 H 1.09002 * 113.86789 * 89.76287 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0057 5 1 4.3840 1.2411 -0.0100 6 6 3.6656 -0.6904 -0.0039 7 6 4.9225 -1.5217 -0.0082 8 6 5.2665 -1.9048 -1.4245 9 7 6.3584 -2.6546 -1.6736 10 8 4.5602 -1.5392 -2.3403 11 6 2.3863 -1.1741 0.0036 12 6 1.9748 -2.5881 0.0074 13 8 1.8106 -3.1708 1.0623 14 7 1.7801 -3.2365 -1.1580 15 6 1.3703 -4.6430 -1.1543 16 1 0.7071 -4.8258 -0.3088 17 6 2.6078 -5.5345 -1.0339 18 6 0.6355 -4.9635 -2.4574 19 6 -0.8439 -4.5373 -2.4559 20 7 -1.1117 -5.8335 -3.1138 21 6 -2.1023 -6.3071 -3.9320 22 1 -2.0654 -7.3250 -4.2913 23 6 -3.1540 -5.4791 -4.2995 24 7 -3.1988 -4.2385 -3.8621 25 14 -4.5058 -6.1254 -5.4152 26 1 -5.1710 -7.2839 -4.7668 27 1 -5.5042 -5.0528 -5.6556 28 1 -3.9169 -6.5535 -6.7095 29 6 0.1179 -6.4112 -2.5372 30 1 -0.3634 0.0027 1.0276 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3634 -0.8913 -0.5115 33 1 1.9869 2.1058 0.0006 34 1 5.7414 -0.9447 0.4211 35 1 4.7639 -2.4232 0.5837 36 1 6.9226 -2.9480 -0.9412 37 1 6.5800 -2.9009 -2.5853 38 1 1.9114 -2.7718 -1.9993 39 1 3.2710 -5.3516 -1.8794 40 1 2.3027 -6.5809 -1.0307 41 1 3.1313 -5.3061 -0.1055 42 1 1.1834 -4.6439 -3.3438 43 1 -1.2758 -4.4532 -1.4586 44 1 -1.0524 -3.6723 -3.0855 45 1 -3.9339 -3.6600 -4.1186 46 1 0.6756 -7.0395 -3.2315 47 1 -0.0292 -6.8794 -1.5639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970459147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:36 Heat of formation + Delta-G solvation = 16.509242 kcal Electronic energy + Delta-G solvation = -29548.054394 eV Core-core repulsion = 25540.035216 eV Total energy + Delta-G solvation = -4008.019178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42202 -39.39385 -39.18984 -37.74443 -34.51104 -33.96695 -32.84960 -32.16832 -31.72425 -30.16328 -28.17071 -27.41500 -25.96073 -24.79624 -23.96883 -22.76953 -21.33298 -20.65706 -19.66302 -19.44314 -18.52766 -18.07928 -17.22717 -16.86732 -16.67997 -16.10556 -15.91581 -15.30637 -14.79812 -14.53342 -14.34430 -13.99431 -13.77670 -13.71558 -13.40206 -13.33249 -13.04858 -12.81150 -12.64860 -12.50614 -12.33845 -12.12355 -11.93846 -11.55568 -11.25235 -11.18421 -11.16486 -10.81834 -10.64847 -10.28198 -10.25404 -9.97704 -9.90748 -9.62846 -9.53702 -9.28005 -8.70133 -8.55783 -8.49187 -8.14896 -6.77100 -5.66828 -2.98969 1.98774 2.36009 2.62182 2.94843 3.07585 3.34795 3.45635 3.49235 3.50885 3.80562 4.30848 4.53471 4.63399 4.73394 5.00866 5.10007 5.16375 5.29432 5.39175 5.43264 5.47750 5.59318 5.64758 5.77510 5.90194 5.94116 5.97030 6.07566 6.15422 6.19938 6.30059 6.36693 6.46311 6.46937 6.51839 6.71967 6.81883 6.82038 6.94453 6.99073 7.01682 7.35410 7.42646 7.49237 7.67478 7.96235 7.99797 8.08100 8.65920 9.14070 9.80411 10.71041 11.50081 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003183 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.149770 B = 8794.362529 C = 9754.648828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.125 4.125 3 C -0.011 4.011 4 N -0.547 5.547 5 H 0.412 0.588 6 C 0.077 3.923 7 C -0.080 4.080 8 C 0.515 3.485 9 N -0.857 5.857 10 O -0.520 6.520 11 C -0.192 4.192 12 C 0.592 3.408 13 O -0.549 6.549 14 N -0.705 5.705 15 C 0.149 3.851 16 H 0.086 0.914 17 C -0.155 4.155 18 C -0.146 4.146 19 C 0.172 3.828 20 N -0.613 5.613 21 C -0.223 4.223 22 H 0.078 0.922 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.910 3.090 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.130 3.870 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.168 0.832 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.400 0.600 37 H 0.403 0.597 38 H 0.404 0.596 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.253 0.747 46 H 0.042 0.958 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.561 10.120 9.215 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C -0.140 4.140 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.039 4.039 7 C -0.121 4.121 8 C 0.299 3.701 9 N -0.422 5.422 10 O -0.395 6.395 11 C -0.202 4.202 12 C 0.377 3.623 13 O -0.427 6.427 14 N -0.355 5.355 15 C 0.044 3.956 16 H 0.104 0.896 17 C -0.214 4.214 18 C -0.166 4.166 19 C 0.047 3.953 20 N -0.339 5.339 21 C -0.351 4.351 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.567 5.567 25 Si 0.741 3.259 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.004 3.996 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.186 0.814 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.228 0.772 37 H 0.234 0.766 38 H 0.239 0.761 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.105 0.895 43 H 0.044 0.956 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.621 10.142 9.293 25.626 hybrid contribution 0.029 -0.078 -0.932 0.936 sum 21.650 10.064 8.361 25.297 Atomic orbital electron populations 1.20178 0.89303 1.02849 1.01894 1.20472 0.95346 0.90289 1.07021 1.21431 0.82059 0.99014 1.11471 1.41184 1.08160 1.05590 1.59190 0.75230 1.19019 0.93746 0.83238 1.07855 1.20210 0.95085 1.01237 0.95545 1.20457 0.80490 0.77985 0.91176 1.43830 1.28937 1.56441 1.12945 1.90822 1.49214 1.53212 1.46232 1.20057 0.92269 0.92980 1.14918 1.17453 0.76264 0.84801 0.83740 1.90756 1.51949 1.68614 1.31396 1.46149 1.68290 1.12470 1.08579 1.21069 0.95420 0.79545 0.99536 0.89576 1.22110 0.98159 1.00052 1.01066 1.23793 0.98116 0.99326 0.95326 1.22279 0.86366 0.91350 0.95316 1.45980 1.24247 1.10224 1.53433 1.18974 0.99549 0.96561 1.20032 0.90420 1.24768 0.98618 0.96157 1.00870 1.69812 1.32792 1.05774 1.48336 0.86226 0.81696 0.77540 0.80448 1.21266 1.21586 1.21159 1.22486 0.88089 0.93076 0.95984 0.91726 0.91723 0.91213 0.81435 0.87877 0.86428 0.77163 0.76560 0.76149 0.92960 0.91556 0.93039 0.89521 0.95623 0.91034 0.93665 0.93942 0.94834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.35 36.01 0.37 -0.76 16 2 C -0.12 -1.70 6.36 -102.54 -0.65 -2.36 16 3 C -0.01 -0.12 11.82 -16.83 -0.20 -0.32 16 4 N -0.55 -5.00 5.90 -9.11 -0.05 -5.05 16 5 H 0.41 2.27 8.96 -40.82 -0.37 1.90 16 6 C 0.08 0.88 5.67 -81.88 -0.46 0.42 16 7 C -0.08 -0.65 6.01 -29.04 -0.17 -0.82 16 8 C 0.52 4.88 8.09 -10.98 -0.09 4.79 16 9 N -0.86 -4.72 8.87 31.22 0.28 -4.44 16 10 O -0.52 -7.33 16.87 5.55 0.09 -7.23 16 11 C -0.19 -2.83 6.05 -103.35 -0.62 -3.46 16 12 C 0.59 10.06 7.26 -12.59 -0.09 9.97 16 13 O -0.55 -10.94 16.77 5.26 0.09 -10.85 16 14 N -0.71 -11.56 5.07 -54.94 -0.28 -11.84 16 15 C 0.15 2.55 2.38 -67.94 -0.16 2.38 16 16 H 0.09 1.67 7.41 -51.93 -0.39 1.28 16 17 C -0.16 -2.22 9.31 37.16 0.35 -1.87 16 18 C -0.15 -2.84 3.47 -89.69 -0.31 -3.15 16 19 C 0.17 4.25 7.08 -2.84 -0.02 4.23 16 20 N -0.61 -16.39 3.70 -177.68 -0.66 -17.05 16 21 C -0.22 -6.51 10.70 -15.06 -0.16 -6.67 16 22 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -28.14 11.39 55.49 0.63 -27.51 16 25 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 29 C 0.13 2.76 7.64 -2.96 -0.02 2.73 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.12 0.96 8.05 -51.93 -0.42 0.55 16 36 H 0.40 0.92 8.83 -40.82 -0.36 0.56 16 37 H 0.40 2.11 8.93 -40.82 -0.36 1.74 16 38 H 0.40 6.61 8.59 -40.82 -0.35 6.26 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.90 7.52 -51.93 -0.39 0.51 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.68 8.14 -51.93 -0.42 1.25 16 43 H 0.03 0.67 7.99 -51.93 -0.41 0.25 16 44 H 0.07 1.95 7.16 -51.93 -0.37 1.57 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.03 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -38.82 398.01 -8.47 -47.29 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -7.19 Total: 8.13 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -2.35 Total: 4.80 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: -0.08 Total: -65.90 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.82 -8.47 -47.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970459147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.799 kcal (2) G-P(sol) polarization free energy of solvation -38.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds