Wall clock time and date at job start Tue Mar 31 2020 18:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34482 * 126.83895 * 2 1 4 4 N 1.36440 * 108.85985 * 180.25156 * 3 2 1 5 5 H 0.96994 * 124.85698 * 179.77118 * 4 3 2 6 6 C 1.34664 * 110.29782 * 359.75085 * 4 3 2 7 7 C 1.50698 * 125.80095 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46816 * 264.97112 * 7 6 4 9 9 N 1.34781 * 119.99830 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00241 * 359.97438 * 8 7 6 11 11 C 1.36774 * 108.39393 * 359.97438 * 6 4 3 12 12 C 1.47266 * 126.93817 * 179.97438 * 11 6 4 13 13 O 1.21622 * 119.99792 * 90.00570 * 12 11 6 14 14 N 1.34777 * 120.00144 * 269.99935 * 12 11 6 15 15 C 1.46497 * 120.00376 * 180.02562 * 14 12 11 16 16 H 1.09002 * 109.46725 * 35.00314 * 15 14 12 17 17 C 1.52997 * 109.47188 * 275.00479 * 15 14 12 18 18 C 1.52992 * 109.47081 * 155.00022 * 15 14 12 19 19 C 1.53953 * 113.74647 * 278.74078 * 18 15 14 20 20 N 1.47803 * 86.03866 * 222.08719 * 19 18 15 21 21 C 1.36940 * 134.45480 * 204.64597 * 20 19 18 22 22 H 1.08004 * 120.00062 * 179.86839 * 21 20 19 23 23 C 1.38806 * 119.99897 * 359.86583 * 21 20 19 24 24 N 1.31618 * 120.00303 * 0.02562 * 23 21 20 25 25 Si 1.86812 * 119.99830 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47081 * 59.99985 * 25 23 21 27 27 H 1.48495 * 109.46849 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46925 * 299.99870 * 25 23 21 29 29 C 1.47580 * 91.05616 * 24.54814 * 20 19 18 30 30 H 1.08998 * 109.47569 * 270.15019 * 1 2 3 31 31 H 1.09002 * 109.47201 * 30.15106 * 1 2 3 32 32 H 1.08999 * 109.47326 * 150.14764 * 1 2 3 33 33 H 1.08005 * 125.56764 * 0.04021 * 3 2 1 34 34 H 1.08993 * 109.47691 * 24.97082 * 7 6 4 35 35 H 1.09000 * 109.47090 * 144.97298 * 7 6 4 36 36 H 0.96992 * 120.00268 * 0.02562 * 9 8 7 37 37 H 0.97003 * 119.99493 * 180.02562 * 9 8 7 38 38 H 0.97006 * 119.99702 * 0.02562 * 14 12 11 39 39 H 1.09002 * 109.47153 * 299.99573 * 17 15 14 40 40 H 1.09001 * 109.46832 * 179.97438 * 17 15 14 41 41 H 1.09004 * 109.47261 * 59.99745 * 17 15 14 42 42 H 1.08997 * 112.94423 * 50.33745 * 18 15 14 43 43 H 1.08999 * 113.76379 * 336.35463 * 19 18 15 44 44 H 1.09004 * 113.76409 * 107.74717 * 19 18 15 45 45 H 0.96996 * 120.00162 * 180.02562 * 24 23 21 46 46 H 1.08999 * 113.77170 * 221.15419 * 29 20 19 47 47 H 1.09002 * 113.86789 * 89.76287 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0763 0.0000 4 7 3.6111 0.6551 -0.0057 5 1 4.3840 1.2411 -0.0100 6 6 3.6656 -0.6904 -0.0039 7 6 4.9225 -1.5217 -0.0082 8 6 5.2665 -1.9048 -1.4245 9 7 6.3584 -2.6546 -1.6736 10 8 4.5602 -1.5392 -2.3403 11 6 2.3863 -1.1741 0.0036 12 6 1.9748 -2.5881 0.0074 13 8 1.8106 -3.1708 1.0623 14 7 1.7801 -3.2365 -1.1580 15 6 1.3703 -4.6430 -1.1543 16 1 0.7071 -4.8258 -0.3088 17 6 2.6078 -5.5345 -1.0339 18 6 0.6355 -4.9635 -2.4574 19 6 -0.8439 -4.5373 -2.4559 20 7 -1.1117 -5.8335 -3.1138 21 6 -2.1023 -6.3071 -3.9320 22 1 -2.0654 -7.3250 -4.2913 23 6 -3.1540 -5.4791 -4.2995 24 7 -3.1988 -4.2385 -3.8621 25 14 -4.5058 -6.1254 -5.4152 26 1 -5.1710 -7.2839 -4.7668 27 1 -5.5042 -5.0528 -5.6556 28 1 -3.9169 -6.5535 -6.7095 29 6 0.1179 -6.4112 -2.5372 30 1 -0.3634 0.0027 1.0276 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3634 -0.8913 -0.5115 33 1 1.9869 2.1058 0.0006 34 1 5.7414 -0.9447 0.4211 35 1 4.7639 -2.4232 0.5837 36 1 6.9226 -2.9480 -0.9412 37 1 6.5800 -2.9009 -2.5853 38 1 1.9114 -2.7718 -1.9993 39 1 3.2710 -5.3516 -1.8794 40 1 2.3027 -6.5809 -1.0307 41 1 3.1313 -5.3061 -0.1055 42 1 1.1834 -4.6439 -3.3438 43 1 -1.2758 -4.4532 -1.4586 44 1 -1.0524 -3.6723 -3.0855 45 1 -3.9339 -3.6600 -4.1186 46 1 0.6756 -7.0395 -3.2315 47 1 -0.0292 -6.8794 -1.5639 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970459147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:35 Heat of formation + Delta-G solvation = -14.831020 kcal Electronic energy + Delta-G solvation = -29549.413410 eV Core-core repulsion = 25540.035216 eV Total energy + Delta-G solvation = -4009.378193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.30454 -40.67747 -40.12067 -39.41357 -36.06823 -34.62817 -34.15952 -33.72454 -32.75193 -31.49222 -29.40992 -29.08493 -26.86649 -26.59076 -25.68583 -24.18433 -22.36907 -21.87772 -21.15273 -20.32054 -19.94287 -18.84766 -18.75005 -17.90444 -17.58461 -17.36243 -17.25634 -16.89563 -16.12410 -15.76110 -15.63849 -15.34872 -15.30169 -14.69588 -14.67961 -14.51396 -14.20450 -14.03280 -14.02521 -13.54133 -13.43038 -13.32419 -13.25255 -13.09843 -13.02089 -12.89455 -12.68130 -12.56953 -12.17451 -12.02177 -11.74655 -11.50286 -11.26985 -11.06317 -10.92053 -10.83160 -10.57459 -9.97161 -9.45191 -9.01721 -8.92448 -7.89207 -5.23993 1.12283 1.44147 1.48731 1.54805 1.65811 1.67128 1.68144 2.26701 2.47497 2.51884 2.82849 3.30649 3.38020 3.58618 3.74016 3.91393 4.02796 4.17385 4.21389 4.28176 4.29571 4.43801 4.49477 4.57290 4.59296 4.69442 4.72555 4.81632 4.85742 4.86490 4.99615 5.02287 5.09901 5.15758 5.24944 5.30571 5.32941 5.49515 5.57877 5.66836 5.85700 5.93048 5.95470 6.05176 6.50455 6.63963 6.76352 6.90953 7.32799 7.41183 7.61020 8.57319 9.27487 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003183 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.149770 B = 8794.362529 C = 9754.648828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.167 4.167 3 C 0.009 3.991 4 N -0.530 5.530 5 H 0.433 0.567 6 C 0.089 3.911 7 C -0.079 4.079 8 C 0.514 3.486 9 N -0.836 5.836 10 O -0.574 6.574 11 C -0.240 4.240 12 C 0.596 3.404 13 O -0.586 6.586 14 N -0.701 5.701 15 C 0.156 3.844 16 H 0.060 0.940 17 C -0.144 4.144 18 C -0.111 4.111 19 C 0.170 3.830 20 N -0.643 5.643 21 C -0.240 4.240 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.955 5.955 25 Si 0.982 3.018 26 H -0.277 1.277 27 H -0.294 1.294 28 H -0.273 1.273 29 C 0.134 3.866 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.205 0.795 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.418 0.582 37 H 0.407 0.593 38 H 0.404 0.596 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.094 0.906 43 H 0.003 0.997 44 H 0.037 0.963 45 H 0.248 0.752 46 H 0.065 0.935 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.497 10.276 9.155 28.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.173 4.173 3 C -0.121 4.121 4 N -0.125 5.125 5 H 0.273 0.727 6 C -0.028 4.028 7 C -0.120 4.120 8 C 0.298 3.702 9 N -0.401 5.401 10 O -0.453 6.453 11 C -0.251 4.251 12 C 0.384 3.616 13 O -0.467 6.467 14 N -0.350 5.350 15 C 0.051 3.949 16 H 0.078 0.922 17 C -0.202 4.202 18 C -0.131 4.131 19 C 0.045 3.955 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.604 5.604 25 Si 0.809 3.191 26 H -0.203 1.203 27 H -0.221 1.221 28 H -0.199 1.199 29 C 0.009 3.991 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.222 0.778 34 H 0.167 0.833 35 H 0.136 0.864 36 H 0.250 0.750 37 H 0.239 0.761 38 H 0.239 0.761 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 24.656 10.267 9.252 28.265 hybrid contribution -0.817 -0.115 -0.872 1.201 sum 23.839 10.152 8.379 27.232 Atomic orbital electron populations 1.20091 0.90176 1.01926 1.01554 1.20641 0.95407 0.91339 1.09959 1.21873 0.81926 0.99678 1.08595 1.41210 1.08694 1.05166 1.57442 0.72691 1.19369 0.93785 0.84290 1.05402 1.20347 0.95082 1.01495 0.95059 1.20652 0.80655 0.77837 0.91024 1.43672 1.27778 1.54685 1.13956 1.90810 1.51167 1.55606 1.47690 1.20064 0.94381 0.91819 1.18806 1.17812 0.75147 0.85735 0.82948 1.90714 1.53742 1.69780 1.32494 1.46125 1.67973 1.12196 1.08726 1.20886 0.96353 0.80869 0.96781 0.92219 1.22003 0.96568 0.99696 1.01930 1.23423 0.95006 0.97757 0.96937 1.22118 0.90221 0.90045 0.93164 1.46400 1.25315 1.11594 1.53664 1.19454 1.00201 0.96986 1.20161 0.89577 1.25692 1.01228 0.96435 1.02827 1.70036 1.33307 1.07069 1.49943 0.85111 0.78402 0.76807 0.78759 1.20342 1.22063 1.19864 1.22659 0.85873 0.94046 0.96558 0.91855 0.89766 0.94907 0.77842 0.83258 0.86393 0.75039 0.76120 0.76090 0.91384 0.90416 0.92675 0.88766 0.97938 0.94431 0.94344 0.91634 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.28 10.35 71.24 0.74 -1.54 16 2 C -0.17 -4.62 6.36 -18.52 -0.12 -4.73 16 3 C 0.01 0.16 11.82 83.12 0.98 1.14 16 4 N -0.53 -8.26 5.90 -182.72 -1.08 -9.34 16 5 H 0.43 3.12 8.96 -92.71 -0.83 2.29 16 6 C 0.09 1.90 5.67 41.78 0.24 2.13 16 7 C -0.08 -1.07 6.01 29.10 0.17 -0.90 16 8 C 0.51 8.64 8.09 87.66 0.71 9.35 16 9 N -0.84 -6.89 8.87 -173.52 -1.54 -8.43 16 10 O -0.57 -15.61 16.87 -3.05 -0.05 -15.67 16 11 C -0.24 -7.19 6.05 -19.04 -0.12 -7.30 16 12 C 0.60 21.05 7.26 86.62 0.63 21.67 16 13 O -0.59 -24.32 16.77 -4.10 -0.07 -24.39 16 14 N -0.70 -23.82 5.07 -445.97 -2.26 -26.08 16 15 C 0.16 5.42 2.38 44.99 0.11 5.52 16 16 H 0.06 2.41 7.41 -2.39 -0.02 2.40 16 17 C -0.14 -3.87 9.31 71.98 0.67 -3.20 16 18 C -0.11 -4.40 3.47 -10.13 -0.04 -4.43 16 19 C 0.17 8.86 7.08 86.45 0.61 9.47 16 20 N -0.64 -35.12 3.70 -716.07 -2.65 -37.77 16 21 C -0.24 -14.14 10.70 84.03 0.90 -13.24 16 22 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 24 N -0.95 -60.77 11.39 21.65 0.25 -60.52 16 25 Si 0.98 47.55 29.55 68.60 2.03 49.58 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 28 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 29 C 0.13 5.57 7.64 86.49 0.66 6.24 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.20 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.12 1.66 8.05 -2.39 -0.02 1.64 16 36 H 0.42 0.48 8.83 -92.71 -0.82 -0.34 16 37 H 0.41 3.26 8.93 -92.71 -0.83 2.43 16 38 H 0.40 13.78 8.59 -92.70 -0.80 12.98 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 41 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 43 H 0.00 0.16 7.99 -2.39 -0.02 0.14 16 44 H 0.04 2.18 7.16 -2.38 -0.02 2.17 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 Total: -1.00 -89.50 398.01 -1.00 -90.50 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -2.24 Total: 25.61 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.62 Total: 16.51 kcal Atomic # 7 Polarization: -134.86 SS G_CDS: -7.29 Total: -142.15 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -0.12 Total: -40.06 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -89.50 -1.00 -90.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970459147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.670 kcal (2) G-P(sol) polarization free energy of solvation -89.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds