Wall clock time and date at job start Tue Mar 31 2020 19:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35029 * 126.38817 * 2 1 4 4 H 0.97008 * 124.88566 * 0.04952 * 3 2 1 5 5 N 1.28462 * 110.23525 * 180.29896 * 3 2 1 6 6 C 1.31814 * 110.06984 * 359.75403 * 5 3 2 7 7 C 1.47713 * 126.51890 * 180.02562 * 6 5 3 8 8 O 1.21567 * 120.00060 * 179.97438 * 7 6 5 9 9 N 1.34785 * 119.99836 * 359.95952 * 7 6 5 10 10 C 1.47084 * 125.62719 * 0.02562 * 9 7 6 11 11 C 1.54469 * 107.29186 * 181.00503 * 10 9 7 12 12 C 1.54362 * 102.87257 * 21.49277 * 11 10 9 13 13 C 1.47566 * 125.62709 * 179.72033 * 9 7 6 14 14 C 1.52370 * 110.42037 * 207.61866 * 12 11 10 15 15 N 1.47331 * 108.41213 * 186.40556 * 14 12 11 16 16 C 1.36934 * 121.08296 * 229.18659 * 15 14 12 17 17 H 1.07994 * 119.99907 * 153.75755 * 16 15 14 18 18 C 1.38814 * 119.99906 * 333.76663 * 16 15 14 19 19 N 1.31621 * 119.99794 * 344.13459 * 18 16 15 20 20 Si 1.86798 * 120.00122 * 164.13566 * 18 16 15 21 21 H 1.48501 * 109.47140 * 59.99829 * 20 18 16 22 22 H 1.48496 * 109.47329 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46986 * 299.99784 * 20 18 16 24 24 C 1.47175 * 117.83865 * 49.17304 * 15 14 12 25 25 C 1.53280 * 108.56486 * 308.76018 * 24 15 14 26 26 O 1.41881 * 110.75347 * 83.66454 * 12 11 10 27 27 C 1.35365 * 126.38549 * 179.87852 * 2 1 3 28 28 C 1.50706 * 127.24718 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46910 * 270.11894 * 1 2 3 30 30 H 1.09002 * 109.47051 * 30.12050 * 1 2 3 31 31 H 1.08998 * 109.47328 * 150.11945 * 1 2 3 32 32 H 1.08998 * 109.87759 * 300.42427 * 10 9 7 33 33 H 1.08996 * 109.87999 * 61.58452 * 10 9 7 34 34 H 1.08991 * 110.73610 * 139.83556 * 11 10 9 35 35 H 1.09001 * 110.73279 * 262.96862 * 11 10 9 36 36 H 1.09001 * 110.37258 * 275.49666 * 13 9 7 37 37 H 1.08999 * 110.38226 * 37.84644 * 13 9 7 38 38 H 1.09005 * 109.67068 * 306.13692 * 14 12 11 39 39 H 1.08996 * 109.67639 * 66.63790 * 14 12 11 40 40 H 0.97002 * 119.99504 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.61924 * 68.48197 * 24 15 14 42 42 H 1.08998 * 109.62071 * 188.84731 * 24 15 14 43 43 H 1.09003 * 109.50981 * 172.93675 * 25 24 15 44 44 H 1.09000 * 109.51169 * 293.08267 * 25 24 15 45 45 H 1.08995 * 109.46784 * 269.68123 * 28 27 2 46 46 H 1.09005 * 109.47145 * 29.67565 * 28 27 2 47 47 H 1.08998 * 109.47032 * 149.67742 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 0.0007 5 7 3.5420 0.7296 -0.0063 6 6 3.6320 -0.5854 -0.0054 7 6 4.8764 -1.3813 -0.0108 8 8 4.8213 -2.5957 -0.0088 9 7 6.0730 -0.7610 -0.0182 10 6 6.2835 0.6947 -0.0211 11 6 7.8085 0.9381 -0.0557 12 6 8.3559 -0.3897 -0.6214 13 6 7.3882 -1.4303 -0.0182 14 6 9.7755 -0.6342 -0.1248 15 7 10.3093 -1.8248 -0.8089 16 6 10.9095 -2.8347 -0.1054 17 1 10.9136 -3.8398 -0.5005 18 6 11.5127 -2.5666 1.1158 19 7 11.7878 -1.3251 1.4554 20 14 11.9338 -3.9678 2.2772 21 1 12.8773 -4.8989 1.6078 22 1 12.5661 -3.4206 3.5043 23 1 10.6933 -4.6978 2.6424 24 6 10.1761 -1.8938 -2.2730 25 6 8.7135 -1.6234 -2.6433 26 8 8.2936 -0.3959 -2.0389 27 6 2.3100 -1.0897 0.0023 28 6 1.8854 -2.5357 0.0059 29 1 -0.3633 0.0021 1.0277 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8910 -0.5120 32 1 5.8179 1.1347 -0.9029 33 1 5.8588 1.1324 0.8823 34 1 8.0518 1.7689 -0.7177 35 1 8.1930 1.1208 0.9478 36 1 7.6851 -1.6836 0.9995 37 1 7.3587 -2.3252 -0.6397 38 1 10.3983 0.2307 -0.3536 39 1 9.7636 -0.8033 0.9519 40 1 12.2095 -1.1378 2.3086 41 1 10.8157 -1.1413 -2.7345 42 1 10.4675 -2.8848 -2.6207 43 1 8.6205 -1.5463 -3.7266 44 1 8.0892 -2.4400 -2.2807 45 1 1.7888 -2.8834 1.0344 46 1 0.9261 -2.6339 -0.5023 47 1 2.6339 -3.1355 -0.5118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972308658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:52 Heat of formation + Delta-G solvation = 29.262354 kcal Electronic energy + Delta-G solvation = -30204.311601 eV Core-core repulsion = 26196.845440 eV Total energy + Delta-G solvation = -4007.466161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.82493 -39.99344 -38.34590 -36.03008 -34.40923 -33.67173 -32.67077 -31.55821 -31.17121 -28.97986 -28.66616 -27.50928 -26.26162 -25.93351 -23.92966 -23.20965 -22.36348 -21.01207 -20.09161 -19.00852 -18.67647 -17.70802 -17.06297 -16.59803 -16.21310 -15.91813 -15.10423 -14.93589 -14.81755 -14.32327 -14.09182 -14.06532 -13.53954 -13.42577 -13.24201 -13.19135 -13.07883 -12.89194 -12.75772 -12.54944 -12.39878 -12.13673 -11.98141 -11.71432 -11.28300 -11.03437 -10.95325 -10.80089 -10.74023 -10.67787 -10.40657 -10.26292 -9.89590 -9.75450 -9.48202 -9.39337 -9.00981 -8.81482 -8.51009 -8.21475 -6.71764 -5.81954 -3.24688 1.57672 1.95839 2.67956 3.27954 3.39057 3.44410 3.46953 3.57037 4.26919 4.36588 4.45109 4.47459 4.68987 4.96807 5.01807 5.10072 5.12399 5.22510 5.37067 5.44705 5.45836 5.49005 5.58386 5.70610 5.76962 5.84428 5.89102 5.93683 5.98083 6.09383 6.13070 6.15980 6.30175 6.34991 6.37004 6.44609 6.55016 6.61926 6.70142 6.82348 6.87244 7.08993 7.45405 7.70962 7.74801 7.83847 7.98837 8.35067 8.43080 9.13692 9.76355 10.33781 11.26542 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.003236 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.098115 B = 8651.623917 C = 9123.583980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.003 3.997 3 N -0.384 5.384 4 H 0.443 0.557 5 N -0.252 5.252 6 C 0.000 4.000 7 C 0.610 3.390 8 O -0.536 6.536 9 N -0.599 5.599 10 C 0.117 3.883 11 C -0.118 4.118 12 C 0.085 3.915 13 C 0.097 3.903 14 C 0.164 3.836 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.903 3.097 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.110 3.890 25 C 0.044 3.956 26 O -0.373 6.373 27 C -0.145 4.145 28 C -0.078 4.078 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.033 0.967 39 H 0.097 0.903 40 H 0.255 0.745 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.263 7.135 -3.179 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 N -0.099 5.099 4 H 0.287 0.713 5 N -0.088 5.088 6 C -0.161 4.161 7 C 0.397 3.603 8 O -0.411 6.411 9 N -0.332 5.332 10 C -0.006 4.006 11 C -0.157 4.157 12 C 0.043 3.957 13 C -0.025 4.025 14 C 0.038 3.962 15 N -0.319 5.319 16 C -0.380 4.380 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.550 5.550 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.016 4.016 25 C -0.033 4.033 26 O -0.292 6.292 27 C -0.155 4.155 28 C -0.136 4.136 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.051 0.949 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.078 0.922 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.631 7.559 -3.126 22.193 hybrid contribution -0.207 -0.866 0.756 1.168 sum -20.838 6.692 -2.370 22.015 Atomic orbital electron populations 1.20317 0.86705 1.03770 1.03188 1.21166 0.95122 0.86998 1.08971 1.43233 1.03134 1.09309 1.54177 0.71296 1.73698 1.01052 1.15022 1.18978 1.21846 0.94777 0.89573 1.09898 1.16478 0.80639 0.86004 0.77197 1.90766 1.86140 1.12631 1.51601 1.48408 1.05486 1.08190 1.71087 1.22028 0.96355 0.80405 1.01831 1.22588 0.93391 0.97565 1.02130 1.22753 0.97602 0.93516 0.81789 1.22829 0.80242 0.97223 1.02198 1.21180 0.86508 0.89475 0.99083 1.44112 1.67264 1.20801 0.99710 1.19147 1.29216 0.88031 1.01637 0.91389 1.25022 0.98156 0.96299 1.00080 1.69993 1.44765 1.17548 1.22696 0.86351 0.78271 0.81672 0.80418 1.20857 1.21576 1.20840 1.21587 0.93438 0.99681 0.86896 1.23099 0.96930 0.86771 0.96542 1.87623 1.87009 1.36002 1.18523 1.20111 0.90649 0.96669 1.08114 1.20185 1.01185 0.89841 1.02341 0.90429 0.91254 0.89611 0.91093 0.91436 0.89382 0.89075 0.90162 0.89809 0.94871 0.88462 0.93475 0.95566 0.91888 0.89968 0.93449 0.91493 0.92175 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.26 36.01 0.37 -0.05 16 2 C 0.00 0.02 7.23 -82.21 -0.59 -0.57 16 3 N -0.38 -3.61 6.83 33.50 0.23 -3.38 16 4 H 0.44 2.35 8.96 -190.44 -1.71 0.64 16 5 N -0.25 -3.33 9.76 33.42 0.33 -3.01 16 6 C 0.00 0.00 6.98 -82.76 -0.58 -0.58 16 7 C 0.61 11.35 7.86 -12.39 -0.10 11.26 16 8 O -0.54 -11.22 15.38 5.31 0.08 -11.14 16 9 N -0.60 -10.89 3.33 -171.76 -0.57 -11.46 16 10 C 0.12 1.80 5.55 -2.95 -0.02 1.79 16 11 C -0.12 -1.91 6.11 -25.25 -0.15 -2.06 16 12 C 0.09 1.68 0.83 -89.51 -0.07 1.61 16 13 C 0.10 1.95 5.86 -2.74 -0.02 1.93 16 14 C 0.16 3.83 4.06 -3.91 -0.02 3.82 16 15 N -0.59 -14.83 2.99 -172.24 -0.51 -15.34 16 16 C -0.25 -6.82 9.66 -15.06 -0.15 -6.96 16 17 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 18 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 19 N -0.91 -25.68 11.11 55.49 0.62 -25.07 16 20 Si 0.90 21.70 29.58 -169.99 -5.03 16.67 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.11 2.35 6.71 -3.53 -0.02 2.32 16 25 C 0.04 0.84 6.79 37.30 0.25 1.10 16 26 O -0.37 -7.45 10.29 -35.22 -0.36 -7.81 16 27 C -0.15 -1.88 6.25 -104.40 -0.65 -2.53 16 28 C -0.08 -0.90 9.74 36.01 0.35 -0.55 16 29 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.41 7.30 -51.93 -0.38 0.03 16 32 H 0.07 1.08 7.66 -51.93 -0.40 0.68 16 33 H 0.07 0.96 7.77 -51.93 -0.40 0.56 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.09 1.40 8.00 -51.93 -0.42 0.98 16 36 H 0.08 1.71 7.82 -51.93 -0.41 1.30 16 37 H 0.08 1.84 6.03 -51.93 -0.31 1.53 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 2.49 5.94 -51.93 -0.31 2.18 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 1.28 7.96 -51.93 -0.41 0.86 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.05 0.93 6.27 -51.93 -0.33 0.61 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.52 7.30 -51.93 -0.38 0.14 16 47 H 0.08 1.17 6.72 -51.93 -0.35 0.82 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -33.51 370.38 -9.43 -42.94 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.31 Total: 1.52 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: -1.48 Total: 10.50 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.08 Total: -58.26 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.28 Total: -18.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.51 -9.43 -42.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972308658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.200 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds