Wall clock time and date at job start Tue Mar 31 2020 19:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35029 * 126.38817 * 2 1 4 4 H 0.97008 * 124.88566 * 0.04952 * 3 2 1 5 5 N 1.28462 * 110.23525 * 180.29896 * 3 2 1 6 6 C 1.31814 * 110.06984 * 359.75403 * 5 3 2 7 7 C 1.47713 * 126.51890 * 180.02562 * 6 5 3 8 8 O 1.21567 * 120.00060 * 179.97438 * 7 6 5 9 9 N 1.34785 * 119.99836 * 359.95952 * 7 6 5 10 10 C 1.47084 * 125.62719 * 0.02562 * 9 7 6 11 11 C 1.54469 * 107.29186 * 181.00503 * 10 9 7 12 12 C 1.54362 * 102.87257 * 21.49277 * 11 10 9 13 13 C 1.47566 * 125.62709 * 179.72033 * 9 7 6 14 14 C 1.52370 * 110.42037 * 207.61866 * 12 11 10 15 15 N 1.47331 * 108.41213 * 186.40556 * 14 12 11 16 16 C 1.36934 * 121.08296 * 229.18659 * 15 14 12 17 17 H 1.07994 * 119.99907 * 153.75755 * 16 15 14 18 18 C 1.38814 * 119.99906 * 333.76663 * 16 15 14 19 19 N 1.31621 * 119.99794 * 344.13459 * 18 16 15 20 20 Si 1.86798 * 120.00122 * 164.13566 * 18 16 15 21 21 H 1.48501 * 109.47140 * 59.99829 * 20 18 16 22 22 H 1.48496 * 109.47329 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46986 * 299.99784 * 20 18 16 24 24 C 1.47175 * 117.83865 * 49.17304 * 15 14 12 25 25 C 1.53280 * 108.56486 * 308.76018 * 24 15 14 26 26 O 1.41881 * 110.75347 * 83.66454 * 12 11 10 27 27 C 1.35365 * 126.38549 * 179.87852 * 2 1 3 28 28 C 1.50706 * 127.24718 * 359.97438 * 27 2 1 29 29 H 1.08999 * 109.46910 * 270.11894 * 1 2 3 30 30 H 1.09002 * 109.47051 * 30.12050 * 1 2 3 31 31 H 1.08998 * 109.47328 * 150.11945 * 1 2 3 32 32 H 1.08998 * 109.87759 * 300.42427 * 10 9 7 33 33 H 1.08996 * 109.87999 * 61.58452 * 10 9 7 34 34 H 1.08991 * 110.73610 * 139.83556 * 11 10 9 35 35 H 1.09001 * 110.73279 * 262.96862 * 11 10 9 36 36 H 1.09001 * 110.37258 * 275.49666 * 13 9 7 37 37 H 1.08999 * 110.38226 * 37.84644 * 13 9 7 38 38 H 1.09005 * 109.67068 * 306.13692 * 14 12 11 39 39 H 1.08996 * 109.67639 * 66.63790 * 14 12 11 40 40 H 0.97002 * 119.99504 * 180.02562 * 19 18 16 41 41 H 1.09000 * 109.61924 * 68.48197 * 24 15 14 42 42 H 1.08998 * 109.62071 * 188.84731 * 24 15 14 43 43 H 1.09003 * 109.50981 * 172.93675 * 25 24 15 44 44 H 1.09000 * 109.51169 * 293.08267 * 25 24 15 45 45 H 1.08995 * 109.46784 * 269.68123 * 28 27 2 46 46 H 1.09005 * 109.47145 * 29.67565 * 28 27 2 47 47 H 1.08998 * 109.47032 * 149.67742 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3081 1.0870 0.0000 4 1 1.9967 2.0057 0.0007 5 7 3.5420 0.7296 -0.0063 6 6 3.6320 -0.5854 -0.0054 7 6 4.8764 -1.3813 -0.0108 8 8 4.8213 -2.5957 -0.0088 9 7 6.0730 -0.7610 -0.0182 10 6 6.2835 0.6947 -0.0211 11 6 7.8085 0.9381 -0.0557 12 6 8.3559 -0.3897 -0.6214 13 6 7.3882 -1.4303 -0.0182 14 6 9.7755 -0.6342 -0.1248 15 7 10.3093 -1.8248 -0.8089 16 6 10.9095 -2.8347 -0.1054 17 1 10.9136 -3.8398 -0.5005 18 6 11.5127 -2.5666 1.1158 19 7 11.7878 -1.3251 1.4554 20 14 11.9338 -3.9678 2.2772 21 1 12.8773 -4.8989 1.6078 22 1 12.5661 -3.4206 3.5043 23 1 10.6933 -4.6978 2.6424 24 6 10.1761 -1.8938 -2.2730 25 6 8.7135 -1.6234 -2.6433 26 8 8.2936 -0.3959 -2.0389 27 6 2.3100 -1.0897 0.0023 28 6 1.8854 -2.5357 0.0059 29 1 -0.3633 0.0021 1.0277 30 1 -0.3633 0.8889 -0.5157 31 1 -0.3634 -0.8910 -0.5120 32 1 5.8179 1.1347 -0.9029 33 1 5.8588 1.1324 0.8823 34 1 8.0518 1.7689 -0.7177 35 1 8.1930 1.1208 0.9478 36 1 7.6851 -1.6836 0.9995 37 1 7.3587 -2.3252 -0.6397 38 1 10.3983 0.2307 -0.3536 39 1 9.7636 -0.8033 0.9519 40 1 12.2095 -1.1378 2.3086 41 1 10.8157 -1.1413 -2.7345 42 1 10.4675 -2.8848 -2.6207 43 1 8.6205 -1.5463 -3.7266 44 1 8.0892 -2.4400 -2.2807 45 1 1.7888 -2.8834 1.0344 46 1 0.9261 -2.6339 -0.5023 47 1 2.6339 -3.1355 -0.5118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972308658.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:51 Heat of formation + Delta-G solvation = 5.891865 kcal Electronic energy + Delta-G solvation = -30205.325022 eV Core-core repulsion = 26196.845440 eV Total energy + Delta-G solvation = -4008.479582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.73502 -41.53236 -39.87406 -37.57551 -36.27784 -34.48797 -33.74244 -33.26470 -32.82002 -30.45969 -29.67035 -29.05904 -27.65779 -27.02881 -25.42796 -24.94588 -23.70084 -22.64559 -20.98042 -20.51274 -20.15998 -18.92946 -18.57595 -18.00698 -17.62847 -17.12867 -16.78606 -16.36750 -16.24707 -16.11872 -15.70960 -15.22242 -15.10334 -14.76392 -14.68971 -14.53452 -14.09730 -13.91191 -13.84592 -13.70178 -13.58358 -13.32449 -13.07007 -12.97196 -12.92338 -12.79021 -12.67771 -12.50364 -12.29031 -12.18110 -12.15635 -11.86322 -11.70976 -11.17113 -11.15971 -10.78932 -10.52850 -10.36165 -9.74908 -9.58593 -8.72959 -7.90976 -5.36498 0.47603 1.08109 1.44667 1.47790 1.53826 1.72826 2.13544 2.27129 2.46651 2.74937 3.19446 3.27183 3.44253 3.59425 3.68752 3.78635 4.02261 4.03335 4.20471 4.25918 4.28956 4.31317 4.34922 4.50363 4.57542 4.65576 4.72753 4.76449 4.81132 4.87222 4.89682 4.91099 5.00604 5.03007 5.05604 5.09083 5.12450 5.22115 5.23170 5.25951 5.50483 5.53496 5.60405 6.14628 6.28119 6.33852 6.44423 6.80256 7.06133 7.06914 7.74253 8.28693 9.15167 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017473 B = 0.003236 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.098115 B = 8651.623917 C = 9123.583980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.029 3.971 3 N -0.362 5.362 4 H 0.463 0.537 5 N -0.259 5.259 6 C -0.035 4.035 7 C 0.603 3.397 8 O -0.573 6.573 9 N -0.603 5.603 10 C 0.126 3.874 11 C -0.112 4.112 12 C 0.092 3.908 13 C 0.106 3.894 14 C 0.175 3.825 15 N -0.614 5.614 16 C -0.263 4.263 17 H 0.067 0.933 18 C -0.044 4.044 19 N -0.931 5.931 20 Si 0.963 3.037 21 H -0.275 1.275 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.108 3.892 25 C 0.051 3.949 26 O -0.373 6.373 27 C -0.176 4.176 28 C -0.073 4.073 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.013 0.987 39 H 0.070 0.930 40 H 0.252 0.748 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.120 0.880 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.198 8.700 -3.708 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 N -0.080 5.080 4 H 0.312 0.688 5 N -0.097 5.097 6 C -0.194 4.194 7 C 0.391 3.609 8 O -0.451 6.451 9 N -0.335 5.335 10 C 0.004 3.996 11 C -0.150 4.150 12 C 0.050 3.950 13 C -0.016 4.016 14 C 0.049 3.951 15 N -0.339 5.339 16 C -0.393 4.393 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.577 5.577 20 Si 0.791 3.209 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.018 4.018 25 C -0.026 4.026 26 O -0.292 6.292 27 C -0.186 4.186 28 C -0.131 4.131 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.126 0.874 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.579 9.162 -3.680 25.563 hybrid contribution 0.632 -1.321 0.872 1.704 sum -22.947 7.841 -2.809 24.412 Atomic orbital electron populations 1.20539 0.83038 1.05577 1.04756 1.21698 0.96886 0.85545 1.05569 1.43362 1.02122 1.10586 1.51880 0.68845 1.73578 1.02955 1.13846 1.19305 1.21495 0.94173 0.90538 1.13176 1.17034 0.81577 0.86024 0.76216 1.90727 1.86837 1.14373 1.53197 1.48474 1.04671 1.09169 1.71182 1.22082 0.95691 0.78766 1.03049 1.22641 0.93653 0.96062 1.02635 1.22546 0.95144 0.95475 0.81811 1.22478 0.81974 0.96786 1.00411 1.20938 0.88370 0.88192 0.97588 1.44369 1.67410 1.20693 1.01381 1.19421 1.28955 0.88690 1.02251 0.91554 1.25698 0.98590 0.98354 1.01350 1.70125 1.45658 1.19063 1.22810 0.85412 0.77858 0.79173 0.78468 1.20055 1.21567 1.20957 1.21733 0.95095 1.00109 0.84855 1.23119 0.94788 0.86237 0.98503 1.87628 1.86804 1.36402 1.18339 1.20396 0.90234 0.98128 1.09839 1.20131 1.01685 0.89011 1.02261 0.88804 0.88537 0.88748 0.90178 0.89782 0.87434 0.88481 0.92310 0.92194 0.96924 0.91164 0.93834 0.95632 0.91202 0.86235 0.94503 0.91580 0.88944 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.26 71.24 0.73 0.27 16 2 C 0.03 0.46 7.23 41.40 0.30 0.76 16 3 N -0.36 -5.59 6.83 -47.93 -0.33 -5.92 16 4 H 0.46 2.99 8.96 -219.99 -1.97 1.01 16 5 N -0.26 -6.35 9.76 -48.18 -0.47 -6.82 16 6 C -0.03 -1.07 6.98 42.45 0.30 -0.77 16 7 C 0.60 23.10 7.86 86.75 0.68 23.78 16 8 O -0.57 -25.37 15.38 -3.93 -0.06 -25.43 16 9 N -0.60 -22.33 3.33 -815.60 -2.72 -25.05 16 10 C 0.13 3.76 5.55 86.77 0.48 4.25 16 11 C -0.11 -3.52 6.11 31.56 0.19 -3.33 16 12 C 0.09 3.69 0.83 -10.07 -0.01 3.68 16 13 C 0.11 4.48 5.86 86.64 0.51 4.99 16 14 C 0.18 8.49 4.06 86.01 0.35 8.84 16 15 N -0.61 -31.50 2.99 -698.83 -2.09 -33.59 16 16 C -0.26 -14.69 9.66 84.03 0.81 -13.88 16 17 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 18 C -0.04 -2.47 4.98 84.86 0.42 -2.05 16 19 N -0.93 -54.35 11.11 21.65 0.24 -54.11 16 20 Si 0.96 45.61 29.58 68.60 2.03 47.64 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.11 4.61 6.71 86.34 0.58 5.19 16 25 C 0.05 1.91 6.79 72.08 0.49 2.40 16 26 O -0.37 -14.70 10.29 -148.95 -1.53 -16.24 16 27 C -0.18 -4.32 6.25 -19.72 -0.12 -4.45 16 28 C -0.07 -1.66 9.74 71.24 0.69 -0.97 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.09 0.46 7.30 -2.39 -0.02 0.44 16 32 H 0.08 2.28 7.66 -2.39 -0.02 2.26 16 33 H 0.08 2.26 7.77 -2.39 -0.02 2.24 16 34 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.10 2.94 8.00 -2.39 -0.02 2.92 16 36 H 0.06 2.68 7.82 -2.39 -0.02 2.66 16 37 H 0.06 2.78 6.03 -2.39 -0.01 2.77 16 38 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.07 3.77 5.94 -2.39 -0.01 3.76 16 40 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 2.84 7.96 -2.39 -0.02 2.83 16 43 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 44 H 0.04 1.47 6.27 -2.39 -0.01 1.46 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 1.40 7.30 -2.38 -0.02 1.38 16 47 H 0.05 1.48 6.72 -2.39 -0.02 1.47 16 Total: -1.00 -76.36 370.38 0.51 -75.85 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.97 Total: 14.96 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 6.40 Total: 28.71 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -5.36 Total: -125.49 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -1.59 Total: -41.67 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -76.36 0.51 -75.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972308658.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.738 kcal (2) G-P(sol) polarization free energy of solvation -76.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds