Wall clock time and date at job start Tue Mar 31 2020 18:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34486 * 126.82794 * 2 1 4 4 N 1.36451 * 108.85115 * 179.97438 * 3 2 1 5 5 H 0.97001 * 124.84766 * 179.97438 * 4 3 2 6 6 C 1.34663 * 110.29980 * 359.72687 * 4 3 2 7 7 C 1.50696 * 125.80141 * 180.30550 * 6 4 3 8 8 C 1.50700 * 109.46750 * 265.16575 * 7 6 4 9 9 N 1.34787 * 119.99716 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00335 * 359.97438 * 8 7 6 11 11 C 1.36772 * 108.39265 * 0.44462 * 6 4 3 12 12 C 1.47261 * 126.93503 * 179.83782 * 11 6 4 13 13 O 1.21629 * 119.99957 * 269.70475 * 12 11 6 14 14 N 1.34779 * 120.00093 * 89.71350 * 12 11 6 15 15 C 1.47489 * 125.59145 * 359.94426 * 14 12 11 16 16 C 1.54326 * 107.03042 * 181.07170 * 15 14 12 17 17 C 1.55155 * 103.10381 * 22.23838 * 16 15 14 18 18 H 1.09004 * 111.00097 * 82.52122 * 17 16 15 19 19 N 1.46505 * 111.00291 * 206.33444 * 17 16 15 20 20 C 1.46491 * 119.99965 * 58.54640 * 19 17 16 21 21 C 1.36942 * 119.99737 * 238.54836 * 19 17 16 22 22 H 1.08000 * 119.99979 * 23.29982 * 21 19 17 23 23 C 1.38813 * 119.99599 * 203.30287 * 21 19 17 24 24 N 1.31612 * 120.00268 * 13.98378 * 23 21 19 25 25 Si 1.86805 * 119.99669 * 193.98623 * 23 21 19 26 26 H 1.48500 * 109.46792 * 89.99930 * 25 23 21 27 27 H 1.48503 * 109.46957 * 209.99870 * 25 23 21 28 28 H 1.48498 * 109.47024 * 330.00059 * 25 23 21 29 29 C 1.47422 * 125.64592 * 179.97438 * 14 12 11 30 30 H 1.08997 * 109.47300 * 270.03633 * 1 2 3 31 31 H 1.08995 * 109.47486 * 30.04805 * 1 2 3 32 32 H 1.09007 * 109.46954 * 150.04391 * 1 2 3 33 33 H 1.07993 * 125.57331 * 359.97438 * 3 2 1 34 34 H 1.08997 * 109.47217 * 25.16165 * 7 6 4 35 35 H 1.08994 * 109.46948 * 145.16715 * 7 6 4 36 36 H 0.96994 * 119.99828 * 359.97438 * 9 8 7 37 37 H 0.96998 * 119.99949 * 180.02562 * 9 8 7 38 38 H 1.08991 * 110.03248 * 61.71065 * 15 14 12 39 39 H 1.09000 * 109.96230 * 300.39013 * 15 14 12 40 40 H 1.09001 * 110.71895 * 263.78181 * 16 15 14 41 41 H 1.08998 * 110.71497 * 140.69301 * 16 15 14 42 42 H 1.09002 * 109.47140 * 95.17044 * 20 19 17 43 43 H 1.09002 * 109.46979 * 215.16638 * 20 19 17 44 44 H 1.08994 * 109.47310 * 335.16863 * 20 19 17 45 45 H 0.97000 * 120.00681 * 179.97438 * 24 23 21 46 46 H 1.08997 * 110.36837 * 37.00971 * 29 14 12 47 47 H 1.09000 * 110.46016 * 274.73197 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0765 0.0000 4 7 3.6111 0.6553 0.0006 5 1 4.3840 1.2415 0.0003 6 6 3.6656 -0.6902 0.0070 7 6 4.9226 -1.5214 0.0161 8 6 5.2814 -1.9048 -1.3965 9 7 6.3760 -2.6546 -1.6338 10 8 4.5848 -1.5395 -2.3196 11 6 2.3864 -1.1740 0.0007 12 6 1.9751 -2.5880 0.0009 13 8 1.8060 -3.1724 -1.0523 14 7 1.7859 -3.2346 1.1683 15 6 1.9561 -2.6491 2.5112 16 6 1.6582 -3.7669 3.5327 17 6 1.8905 -5.0636 2.7129 18 1 2.9493 -5.3203 2.6796 19 7 1.1004 -6.1737 3.2512 20 6 -0.3579 -6.0622 3.3345 21 6 1.7252 -7.3157 3.6766 22 1 2.7631 -7.2847 3.9737 23 6 1.0245 -8.5129 3.7258 24 7 -0.1368 -8.6214 3.1161 25 14 1.7300 -9.9703 4.6575 26 1 1.2662 -9.9277 6.0676 27 1 1.2712 -11.2323 4.0234 28 1 3.2133 -9.9093 4.6223 29 6 1.3755 -4.6431 1.3136 30 1 -0.3634 0.0007 1.0276 31 1 -0.3634 0.8895 -0.5145 32 1 -0.3633 -0.8904 -0.5132 33 1 1.9866 2.1059 -0.0004 34 1 5.7369 -0.9440 0.4538 35 1 4.7578 -2.4226 0.6065 36 1 6.9329 -2.9471 -0.8955 37 1 6.6072 -2.9011 -2.5430 38 1 1.2575 -1.8242 2.6502 39 1 2.9797 -2.2959 2.6362 40 1 0.6260 -3.7086 3.8781 41 1 2.3486 -3.7140 4.3745 42 1 -0.8080 -6.5157 2.4514 43 1 -0.7113 -6.5775 4.2276 44 1 -0.6395 -5.0105 3.3864 45 1 -0.6263 -9.4581 3.1502 46 1 1.8385 -5.2549 0.5394 47 1 0.2900 -4.7304 1.2666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972387249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:18:34 Heat of formation + Delta-G solvation = 0.368592 kcal Electronic energy + Delta-G solvation = -29724.504586 eV Core-core repulsion = 25715.785498 eV Total energy + Delta-G solvation = -4008.719089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.42529 -39.30251 -39.15011 -37.09902 -34.67619 -33.84302 -32.87631 -31.94570 -31.30871 -29.66683 -28.57823 -27.52979 -26.04147 -25.97805 -23.97700 -22.35898 -21.59246 -20.97056 -19.48108 -19.22264 -18.35645 -17.92227 -17.19489 -16.99422 -16.75268 -16.27455 -15.75984 -15.25191 -14.77104 -14.47664 -14.43350 -14.04280 -13.70253 -13.39206 -13.35836 -13.19158 -13.13254 -12.68832 -12.57739 -12.55244 -12.33502 -12.28075 -12.01284 -11.85426 -11.40980 -11.23502 -10.89319 -10.77964 -10.47714 -10.42698 -10.23782 -10.15746 -9.88374 -9.84433 -9.79688 -9.51875 -8.57727 -8.49304 -8.16969 -8.14079 -6.77881 -5.74618 -3.22630 2.00643 2.49958 2.58619 2.97235 3.06531 3.37309 3.43075 3.45349 3.47842 3.58651 4.35900 4.47554 4.67730 4.83380 4.93289 5.05023 5.11659 5.16344 5.33358 5.38734 5.39728 5.48258 5.60511 5.71147 5.78484 5.89674 5.93398 5.98282 6.06483 6.10277 6.21206 6.37754 6.48044 6.59617 6.64745 6.71097 6.79399 6.84949 6.93040 6.95634 7.10935 7.34830 7.42185 7.72866 7.78981 7.99202 8.11312 8.36786 8.64803 9.20041 9.82844 10.32191 11.29551 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.015035 B = 0.003184 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.854835 B = 8791.566936 C = 9777.380987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.132 4.132 3 C -0.009 4.009 4 N -0.547 5.547 5 H 0.412 0.588 6 C 0.077 3.923 7 C -0.079 4.079 8 C 0.514 3.486 9 N -0.858 5.858 10 O -0.518 6.518 11 C -0.179 4.179 12 C 0.598 3.402 13 O -0.535 6.535 14 N -0.610 5.610 15 C 0.113 3.887 16 C -0.154 4.154 17 C 0.174 3.826 18 H 0.076 0.924 19 N -0.584 5.584 20 C 0.159 3.841 21 C -0.262 4.262 22 H 0.070 0.930 23 C 0.006 3.994 24 N -0.902 5.902 25 Si 0.906 3.094 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.279 1.279 29 C 0.087 3.913 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.168 0.832 34 H 0.104 0.896 35 H 0.117 0.883 36 H 0.401 0.599 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.041 0.959 44 H 0.003 0.997 45 H 0.254 0.746 46 H 0.070 0.930 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.168 20.671 -1.938 23.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C -0.138 4.138 4 N -0.141 5.141 5 H 0.248 0.752 6 C -0.039 4.039 7 C -0.120 4.120 8 C 0.297 3.703 9 N -0.423 5.423 10 O -0.391 6.391 11 C -0.190 4.190 12 C 0.386 3.614 13 O -0.411 6.411 14 N -0.344 5.344 15 C -0.011 4.011 16 C -0.194 4.194 17 C 0.063 3.937 18 H 0.094 0.906 19 N -0.305 5.305 20 C 0.014 3.986 21 C -0.391 4.391 22 H 0.087 0.913 23 C -0.193 4.193 24 N -0.546 5.546 25 Si 0.736 3.264 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.205 1.205 29 C -0.037 4.037 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.185 0.815 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.229 0.771 37 H 0.233 0.767 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.022 0.978 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.451 20.628 -3.049 23.325 hybrid contribution 1.031 -0.809 0.457 1.388 sum 11.483 19.819 -2.593 23.051 Atomic orbital electron populations 1.20133 0.89674 1.02368 1.01686 1.20401 0.95166 0.90387 1.07940 1.21392 0.82139 0.98861 1.11378 1.41183 1.08123 1.05612 1.59215 0.75182 1.19054 0.93829 0.83166 1.07816 1.20207 0.94954 1.01101 0.95746 1.20424 0.80381 0.78210 0.91240 1.43811 1.29005 1.56615 1.12840 1.90830 1.49435 1.53228 1.45640 1.19977 0.92249 0.92624 1.14120 1.17154 0.77046 0.84842 0.82398 1.90811 1.51465 1.68062 1.30798 1.48636 1.67336 1.13195 1.05256 1.21982 1.00245 0.96675 0.82188 1.23218 1.02698 0.95945 0.97580 1.21445 0.95812 0.87471 0.88923 0.90579 1.43850 1.02471 1.13467 1.70691 1.20804 0.82915 0.93913 1.00938 1.19206 0.96652 0.85747 1.37508 0.91253 1.25054 0.97548 0.97300 0.99428 1.70069 1.15222 1.25596 1.43725 0.86241 0.78479 0.82167 0.79529 1.21457 1.21747 1.20461 1.23052 1.00330 0.79682 1.00614 0.91741 0.91881 0.91755 0.81483 0.87784 0.86504 0.77123 0.76675 0.92117 0.92376 0.90590 0.90807 0.94875 0.94027 0.97844 0.93613 0.91104 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.35 36.01 0.37 -0.60 16 2 C -0.13 -1.76 6.36 -102.54 -0.65 -2.41 16 3 C -0.01 -0.09 11.82 -16.82 -0.20 -0.29 16 4 N -0.55 -5.13 5.90 -9.11 -0.05 -5.19 16 5 H 0.41 2.36 8.96 -40.82 -0.37 2.00 16 6 C 0.08 0.94 5.67 -81.88 -0.46 0.48 16 7 C -0.08 -0.76 6.01 -29.04 -0.17 -0.94 16 8 C 0.51 6.23 8.09 -10.98 -0.09 6.14 16 9 N -0.86 -6.77 8.87 31.22 0.28 -6.49 16 10 O -0.52 -9.06 16.87 5.55 0.09 -8.96 16 11 C -0.18 -2.78 5.22 -103.35 -0.54 -3.32 16 12 C 0.60 11.25 7.33 -12.59 -0.09 11.16 16 13 O -0.53 -12.51 17.36 5.25 0.09 -12.42 16 14 N -0.61 -10.60 3.34 -171.46 -0.57 -11.17 16 15 C 0.11 1.59 6.50 -2.81 -0.02 1.57 16 16 C -0.15 -2.44 6.48 -24.90 -0.16 -2.60 16 17 C 0.17 3.44 3.54 -65.77 -0.23 3.21 16 18 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 19 N -0.58 -14.17 2.96 -171.02 -0.51 -14.67 16 20 C 0.16 3.81 7.60 59.84 0.45 4.27 16 21 C -0.26 -6.98 9.60 -15.06 -0.14 -7.12 16 22 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 23 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 24 N -0.90 -26.05 10.78 55.49 0.60 -25.45 16 25 Si 0.91 21.44 29.58 -169.99 -5.03 16.42 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 29 C 0.09 1.76 6.47 -2.52 -0.02 1.74 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.12 1.13 8.05 -51.93 -0.42 0.71 16 36 H 0.40 1.79 8.83 -40.82 -0.36 1.43 16 37 H 0.40 2.98 8.93 -40.82 -0.36 2.62 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.26 6.36 -51.93 -0.33 0.93 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.03 0.88 7.33 -51.93 -0.38 0.50 16 43 H 0.04 1.07 7.39 -51.93 -0.38 0.68 16 44 H 0.00 0.07 6.34 -51.93 -0.33 -0.26 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 47 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 LS Contribution 389.56 15.07 5.87 5.87 Total: -1.00 -38.27 389.56 -8.33 -46.60 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.06 Total: 4.10 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -2.04 Total: 11.35 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -0.26 Total: -62.96 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: 0.18 Total: -21.38 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.27 -8.33 -46.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972387249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.971 kcal (2) G-P(sol) polarization free energy of solvation -38.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds