Wall clock time and date at job start Tue Mar 31 2020 17:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33324 * 126.10385 * 2 1 4 4 C 1.30854 * 109.67998 * 180.27633 * 3 2 1 5 5 N 1.34492 * 109.16798 * 359.76307 * 4 3 2 6 6 C 1.46504 * 126.47312 * 179.97438 * 5 4 3 7 7 C 1.36659 * 126.10867 * 179.87546 * 2 1 3 8 8 C 1.46763 * 126.84536 * 359.97438 * 7 2 1 9 9 O 1.21680 * 120.00208 * 270.32029 * 8 7 2 10 10 N 1.34782 * 120.00008 * 90.31320 * 8 7 2 11 11 C 1.47080 * 125.62445 * 355.79781 * 10 8 7 12 12 C 1.54460 * 107.29935 * 179.01279 * 11 10 8 13 13 C 1.54382 * 102.86560 * 338.50634 * 12 11 10 14 14 C 1.47573 * 125.63020 * 175.79140 * 10 8 7 15 15 C 1.51945 * 110.23133 * 152.42376 * 13 12 11 16 16 N 1.47333 * 108.62004 * 73.56039 * 15 13 12 17 17 C 1.36939 * 121.06951 * 229.15464 * 16 15 13 18 18 H 1.07991 * 120.00475 * 35.47034 * 17 16 15 19 19 C 1.38823 * 119.99494 * 215.46863 * 17 16 15 20 20 N 1.31615 * 120.00081 * 22.41534 * 19 17 16 21 21 Si 1.86803 * 119.99828 * 202.41070 * 19 17 16 22 22 H 1.48498 * 109.47244 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46883 * 240.00383 * 21 19 17 24 24 H 1.48498 * 109.46672 * 120.00363 * 21 19 17 25 25 C 1.47153 * 117.85333 * 48.87684 * 16 15 13 26 26 C 1.53272 * 108.56598 * 309.03364 * 25 16 15 27 27 O 1.41879 * 110.70760 * 276.29227 * 13 12 11 28 28 H 1.09005 * 109.46894 * 270.12103 * 1 2 3 29 29 H 1.08991 * 109.47493 * 30.12233 * 1 2 3 30 30 H 1.08998 * 109.46413 * 150.12581 * 1 2 3 31 31 H 1.07999 * 125.41513 * 179.74154 * 4 3 2 32 32 H 1.09000 * 109.46809 * 273.31852 * 6 5 4 33 33 H 1.08995 * 109.46960 * 33.31896 * 6 5 4 34 34 H 1.08998 * 109.47007 * 153.32285 * 6 5 4 35 35 H 1.09002 * 109.88272 * 59.58852 * 11 10 8 36 36 H 1.09004 * 109.88024 * 298.43819 * 11 10 8 37 37 H 1.08993 * 110.73925 * 220.15872 * 12 11 10 38 38 H 1.09000 * 110.73401 * 96.84837 * 12 11 10 39 39 H 1.08996 * 110.37732 * 84.47593 * 14 10 8 40 40 H 1.09003 * 110.37291 * 322.13151 * 14 10 8 41 41 H 1.09008 * 109.62146 * 313.73637 * 15 13 12 42 42 H 1.08996 * 109.51789 * 193.32634 * 15 13 12 43 43 H 0.97002 * 119.99686 * 6.86750 * 20 19 17 44 44 H 1.09004 * 109.62325 * 68.75750 * 25 16 15 45 45 H 1.09002 * 109.62211 * 189.12041 * 25 16 15 46 46 H 1.09003 * 109.51704 * 172.90667 * 26 25 16 47 47 H 1.09001 * 109.50985 * 293.05138 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 6 4.8307 -1.4496 -0.0105 7 6 2.3124 -1.1041 0.0024 8 6 1.8822 -2.5072 0.0060 9 8 1.6986 -3.0846 1.0612 10 7 1.6903 -3.1562 -1.1596 11 6 1.7902 -2.5583 -2.4997 12 6 1.5161 -3.6805 -3.5250 13 6 1.8163 -4.9629 -2.7195 14 6 1.3455 -4.5841 -1.3019 15 6 1.0024 -6.1261 -3.2610 16 7 1.5831 -6.5479 -4.5477 17 6 0.7957 -6.7264 -5.6538 18 1 -0.0548 -6.0822 -5.8209 19 6 1.0908 -7.7355 -6.5603 20 7 1.8077 -8.7720 -6.1809 21 14 0.4703 -7.6223 -8.3186 22 1 -0.3058 -6.3679 -8.4899 23 1 -0.4014 -8.7881 -8.6118 24 1 1.6253 -7.6206 -9.2519 25 6 3.0373 -6.7650 -4.6076 26 6 3.7392 -5.5309 -4.0301 27 8 3.2058 -5.2494 -2.7320 28 1 -0.3633 0.0022 1.0277 29 1 -0.3634 0.8888 -0.5157 30 1 -0.3632 -0.8911 -0.5119 31 1 4.3970 1.3745 -0.0113 32 1 5.1602 -1.6030 -1.0382 33 1 5.6127 -0.9365 0.5490 34 1 4.6255 -2.4145 0.4531 35 1 2.7910 -2.1539 -2.6515 36 1 1.0483 -1.7672 -2.6088 37 1 2.1877 -3.5953 -4.3792 38 1 0.4752 -3.6624 -3.8478 39 1 0.2688 -4.7255 -1.2091 40 1 1.8729 -5.1780 -0.5555 41 1 -0.0307 -5.8120 -3.4099 42 1 1.0364 -6.9548 -2.5538 43 1 2.0454 -8.8814 -5.2468 44 1 3.3006 -7.6444 -4.0197 45 1 3.3431 -6.9123 -5.6434 46 1 4.8089 -5.7244 -3.9501 47 1 3.5712 -4.6765 -4.6857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972420305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:59 Heat of formation + Delta-G solvation = 17.759625 kcal Electronic energy + Delta-G solvation = -30347.358931 eV Core-core repulsion = 26339.393974 eV Total energy + Delta-G solvation = -4007.964957 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.42134 -40.35384 -38.74204 -36.36103 -34.74677 -34.70047 -32.28999 -31.39945 -30.81951 -29.88142 -28.74773 -27.66489 -26.40035 -25.48762 -23.84261 -23.27325 -22.19061 -21.37222 -20.77454 -19.44249 -18.83641 -17.73920 -17.53563 -16.69487 -16.42715 -15.87934 -15.59945 -15.31403 -15.06816 -14.72591 -14.52375 -14.07179 -13.89854 -13.78958 -13.64253 -13.37477 -13.22269 -12.94248 -12.90479 -12.74187 -12.57885 -12.49596 -12.46918 -12.34461 -11.57717 -11.42045 -11.08686 -10.78188 -10.74038 -10.61145 -10.60717 -10.21307 -10.06133 -10.00827 -9.82999 -9.50176 -9.23174 -8.75760 -8.59472 -8.48658 -6.98275 -6.15926 -3.48858 1.50463 1.97422 2.63674 2.78003 3.00857 3.42327 3.44189 3.57722 3.90047 4.23518 4.30654 4.40260 4.43848 4.61579 4.73287 4.78919 4.88350 5.00798 5.03480 5.11318 5.13897 5.23123 5.34481 5.49207 5.53821 5.58628 5.63482 5.69194 5.71975 5.74950 5.76817 5.93152 5.98194 5.99523 6.10797 6.17436 6.23233 6.29484 6.37781 6.50619 6.66327 6.82881 6.91108 7.31563 7.64724 7.74425 7.90003 7.92594 8.43728 8.92451 9.66448 10.13272 11.07261 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.003008 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.225464 B = 9306.670924 C = 9543.838708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.055 3.945 3 N -0.491 5.491 4 C 0.198 3.802 5 N -0.437 5.437 6 C 0.069 3.931 7 C -0.068 4.068 8 C 0.611 3.389 9 O -0.528 6.528 10 N -0.599 5.599 11 C 0.109 3.891 12 C -0.144 4.144 13 C 0.096 3.904 14 C 0.123 3.877 15 C 0.131 3.869 16 N -0.595 5.595 17 C -0.354 4.354 18 H 0.055 0.945 19 C -0.017 4.017 20 N -0.910 5.910 21 Si 1.071 2.929 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.289 1.289 25 C 0.121 3.879 26 C 0.043 3.957 27 O -0.373 6.373 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.211 0.789 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.270 0.730 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.661 16.025 9.117 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.078 4.078 3 N -0.210 5.210 4 C -0.084 4.084 5 N -0.120 5.120 6 C -0.074 4.074 7 C -0.185 4.185 8 C 0.397 3.603 9 O -0.403 6.403 10 N -0.332 5.332 11 C -0.014 4.014 12 C -0.182 4.182 13 C 0.054 3.946 14 C 0.001 3.999 15 C 0.004 3.996 16 N -0.320 5.320 17 C -0.483 4.483 18 H 0.073 0.927 19 C -0.221 4.221 20 N -0.548 5.548 21 Si 0.900 3.100 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.216 1.216 25 C -0.005 4.005 26 C -0.035 4.035 27 O -0.292 6.292 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.227 0.773 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.098 0.902 46 H 0.102 0.898 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.597 15.701 8.403 18.392 hybrid contribution 0.406 -0.075 1.188 1.258 sum 5.003 15.626 9.592 19.005 Atomic orbital electron populations 1.20130 0.87093 1.02952 1.02863 1.20824 0.96385 0.86764 1.03836 1.70003 1.00356 1.30050 1.20615 1.24963 0.97213 0.81565 1.04642 1.45269 1.05880 1.07756 1.53085 1.22178 0.84450 0.96462 1.04262 1.20593 0.84912 0.94784 1.18167 1.16447 0.77850 0.83376 0.82672 1.90851 1.51818 1.67245 1.30416 1.48470 1.68110 1.11045 1.05599 1.22068 1.01195 0.96690 0.81424 1.23060 1.03822 0.93589 0.97769 1.22242 0.84077 0.95078 0.93227 1.22172 1.00587 0.80331 0.96804 1.21238 0.95880 0.93253 0.89191 1.44054 1.01392 1.80866 1.05674 1.19916 1.13146 1.13933 1.01337 0.92738 1.26033 0.99370 0.91206 1.05443 1.70710 1.38496 1.25825 1.19785 0.83458 0.76034 0.75197 0.75322 1.21663 1.21916 1.21575 1.21550 0.84734 0.93679 1.00508 1.23241 0.97188 0.98887 0.84182 1.87649 1.21493 1.90207 1.29831 0.90750 0.90444 0.91348 0.77255 0.89764 0.88828 0.89372 0.92032 0.91276 0.89099 0.89438 0.89449 0.89440 0.91337 0.95516 0.91874 0.95493 0.90243 0.89815 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.24 36.01 0.37 -0.43 16 2 C 0.05 0.72 7.15 -82.51 -0.59 0.13 16 3 N -0.49 -6.31 11.20 -10.64 -0.12 -6.43 16 4 C 0.20 1.97 12.52 -90.58 -1.13 0.83 16 5 N -0.44 -4.71 3.17 -121.98 -0.39 -5.10 16 6 C 0.07 0.52 11.05 59.85 0.66 1.19 16 7 C -0.07 -0.92 5.84 -82.14 -0.48 -1.40 16 8 C 0.61 9.28 6.79 -12.81 -0.09 9.19 16 9 O -0.53 -9.66 17.41 5.21 0.09 -9.57 16 10 N -0.60 -8.50 3.33 -172.28 -0.57 -9.08 16 11 C 0.11 1.39 6.48 -2.96 -0.02 1.37 16 12 C -0.14 -2.10 5.86 -25.24 -0.15 -2.25 16 13 C 0.10 1.58 0.84 -89.86 -0.08 1.50 16 14 C 0.12 1.84 6.07 -2.88 -0.02 1.83 16 15 C 0.13 2.56 5.37 -4.12 -0.02 2.54 16 16 N -0.59 -13.79 2.71 -172.50 -0.47 -14.26 16 17 C -0.35 -9.20 9.48 -15.05 -0.14 -9.35 16 18 H 0.05 1.43 7.92 -52.49 -0.42 1.01 16 19 C -0.02 -0.45 4.75 -17.43 -0.08 -0.53 16 20 N -0.91 -26.12 12.74 55.49 0.71 -25.41 16 21 Si 1.07 24.00 29.97 -169.99 -5.10 18.91 16 22 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.12 2.63 4.99 -3.55 -0.02 2.61 16 26 C 0.04 0.74 6.78 37.30 0.25 1.00 16 27 O -0.37 -6.59 10.29 -35.22 -0.36 -6.95 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 31 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.82 7.83 -51.93 -0.41 0.41 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.09 1.41 6.07 -51.93 -0.32 1.09 16 38 H 0.09 1.27 7.81 -51.93 -0.41 0.86 16 39 H 0.09 1.20 7.99 -51.93 -0.42 0.78 16 40 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 41 H 0.07 1.30 7.70 -51.92 -0.40 0.90 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.27 7.88 6.89 -40.82 -0.28 7.60 16 44 H 0.03 0.62 7.78 -51.93 -0.40 0.22 16 45 H 0.08 1.89 6.99 -51.93 -0.36 1.53 16 46 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 47 H 0.05 0.82 6.22 -51.93 -0.32 0.50 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -33.26 378.79 -9.20 -42.45 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.16 Total: 1.48 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: -1.53 Total: 8.24 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.84 Total: -60.27 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.27 Total: -16.52 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.10 Total: 18.91 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.26 -9.20 -42.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972420305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.212 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds