Wall clock time and date at job start Tue Mar 31 2020 17:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33324 * 126.10385 * 2 1 4 4 C 1.30854 * 109.67998 * 180.27633 * 3 2 1 5 5 N 1.34492 * 109.16798 * 359.76307 * 4 3 2 6 6 C 1.46504 * 126.47312 * 179.97438 * 5 4 3 7 7 C 1.36659 * 126.10867 * 179.87546 * 2 1 3 8 8 C 1.46763 * 126.84536 * 359.97438 * 7 2 1 9 9 O 1.21680 * 120.00208 * 270.32029 * 8 7 2 10 10 N 1.34782 * 120.00008 * 90.31320 * 8 7 2 11 11 C 1.47080 * 125.62445 * 355.79781 * 10 8 7 12 12 C 1.54460 * 107.29935 * 179.01279 * 11 10 8 13 13 C 1.54382 * 102.86560 * 338.50634 * 12 11 10 14 14 C 1.47573 * 125.63020 * 175.79140 * 10 8 7 15 15 C 1.51945 * 110.23133 * 152.42376 * 13 12 11 16 16 N 1.47333 * 108.62004 * 73.56039 * 15 13 12 17 17 C 1.36939 * 121.06951 * 229.15464 * 16 15 13 18 18 H 1.07991 * 120.00475 * 35.47034 * 17 16 15 19 19 C 1.38823 * 119.99494 * 215.46863 * 17 16 15 20 20 N 1.31615 * 120.00081 * 22.41534 * 19 17 16 21 21 Si 1.86803 * 119.99828 * 202.41070 * 19 17 16 22 22 H 1.48498 * 109.47244 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46883 * 240.00383 * 21 19 17 24 24 H 1.48498 * 109.46672 * 120.00363 * 21 19 17 25 25 C 1.47153 * 117.85333 * 48.87684 * 16 15 13 26 26 C 1.53272 * 108.56598 * 309.03364 * 25 16 15 27 27 O 1.41879 * 110.70760 * 276.29227 * 13 12 11 28 28 H 1.09005 * 109.46894 * 270.12103 * 1 2 3 29 29 H 1.08991 * 109.47493 * 30.12233 * 1 2 3 30 30 H 1.08998 * 109.46413 * 150.12581 * 1 2 3 31 31 H 1.07999 * 125.41513 * 179.74154 * 4 3 2 32 32 H 1.09000 * 109.46809 * 273.31852 * 6 5 4 33 33 H 1.08995 * 109.46960 * 33.31896 * 6 5 4 34 34 H 1.08998 * 109.47007 * 153.32285 * 6 5 4 35 35 H 1.09002 * 109.88272 * 59.58852 * 11 10 8 36 36 H 1.09004 * 109.88024 * 298.43819 * 11 10 8 37 37 H 1.08993 * 110.73925 * 220.15872 * 12 11 10 38 38 H 1.09000 * 110.73401 * 96.84837 * 12 11 10 39 39 H 1.08996 * 110.37732 * 84.47593 * 14 10 8 40 40 H 1.09003 * 110.37291 * 322.13151 * 14 10 8 41 41 H 1.09008 * 109.62146 * 313.73637 * 15 13 12 42 42 H 1.08996 * 109.51789 * 193.32634 * 15 13 12 43 43 H 0.97002 * 119.99686 * 6.86750 * 20 19 17 44 44 H 1.09004 * 109.62325 * 68.75750 * 25 16 15 45 45 H 1.09002 * 109.62211 * 189.12041 * 25 16 15 46 46 H 1.09003 * 109.51704 * 172.90667 * 26 25 16 47 47 H 1.09001 * 109.50985 * 293.05138 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0772 0.0000 4 6 3.5478 0.7072 -0.0059 5 7 3.6122 -0.6362 -0.0048 6 6 4.8307 -1.4496 -0.0105 7 6 2.3124 -1.1041 0.0024 8 6 1.8822 -2.5072 0.0060 9 8 1.6986 -3.0846 1.0612 10 7 1.6903 -3.1562 -1.1596 11 6 1.7902 -2.5583 -2.4997 12 6 1.5161 -3.6805 -3.5250 13 6 1.8163 -4.9629 -2.7195 14 6 1.3455 -4.5841 -1.3019 15 6 1.0024 -6.1261 -3.2610 16 7 1.5831 -6.5479 -4.5477 17 6 0.7957 -6.7264 -5.6538 18 1 -0.0548 -6.0822 -5.8209 19 6 1.0908 -7.7355 -6.5603 20 7 1.8077 -8.7720 -6.1809 21 14 0.4703 -7.6223 -8.3186 22 1 -0.3058 -6.3679 -8.4899 23 1 -0.4014 -8.7881 -8.6118 24 1 1.6253 -7.6206 -9.2519 25 6 3.0373 -6.7650 -4.6076 26 6 3.7392 -5.5309 -4.0301 27 8 3.2058 -5.2494 -2.7320 28 1 -0.3633 0.0022 1.0277 29 1 -0.3634 0.8888 -0.5157 30 1 -0.3632 -0.8911 -0.5119 31 1 4.3970 1.3745 -0.0113 32 1 5.1602 -1.6030 -1.0382 33 1 5.6127 -0.9365 0.5490 34 1 4.6255 -2.4145 0.4531 35 1 2.7910 -2.1539 -2.6515 36 1 1.0483 -1.7672 -2.6088 37 1 2.1877 -3.5953 -4.3792 38 1 0.4752 -3.6624 -3.8478 39 1 0.2688 -4.7255 -1.2091 40 1 1.8729 -5.1780 -0.5555 41 1 -0.0307 -5.8120 -3.4099 42 1 1.0364 -6.9548 -2.5538 43 1 2.0454 -8.8814 -5.2468 44 1 3.3006 -7.6444 -4.0197 45 1 3.3431 -6.9123 -5.6434 46 1 4.8089 -5.7244 -3.9501 47 1 3.5712 -4.6765 -4.6857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972420305.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:58 Heat of formation + Delta-G solvation = -2.973050 kcal Electronic energy + Delta-G solvation = -30348.257967 eV Core-core repulsion = 26339.393974 eV Total energy + Delta-G solvation = -4008.863993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.27702 -41.65364 -40.06089 -37.75186 -36.46676 -35.47391 -33.69427 -32.88697 -32.10391 -31.12694 -29.72279 -29.05422 -27.43290 -26.81283 -25.40170 -24.60987 -23.40231 -22.77366 -21.63418 -20.71671 -20.07535 -19.43142 -18.77075 -17.84501 -17.52642 -16.97553 -16.71673 -16.59779 -16.28266 -16.18787 -15.74131 -15.66956 -15.43871 -15.15907 -14.63808 -14.54311 -14.36224 -14.23367 -13.93800 -13.93119 -13.77154 -13.59312 -13.30300 -13.26101 -13.14518 -12.91412 -12.55523 -12.41028 -12.30635 -12.09561 -11.88712 -11.79608 -11.72178 -11.16097 -11.02327 -10.86320 -10.64539 -10.46267 -9.92511 -9.48326 -8.94427 -8.21194 -5.55587 0.62687 0.96962 1.59669 1.60858 1.66825 1.82947 1.94026 2.04906 2.53424 2.62239 3.12059 3.23536 3.35775 3.42903 3.58119 3.73832 3.77214 3.80093 4.04327 4.09240 4.13776 4.23165 4.23615 4.28600 4.34767 4.44353 4.52002 4.52421 4.57390 4.62312 4.66655 4.70814 4.79167 4.81184 4.85574 4.91091 4.95708 4.98466 5.06813 5.12127 5.18944 5.49275 5.85575 6.10029 6.18364 6.22228 6.35029 6.75972 6.91183 6.96090 7.67343 8.15887 8.96011 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.021349 B = 0.003008 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.225464 B = 9306.670924 C = 9543.838708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.047 3.953 3 N -0.523 5.523 4 C 0.217 3.783 5 N -0.438 5.438 6 C 0.066 3.934 7 C -0.096 4.096 8 C 0.617 3.383 9 O -0.568 6.568 10 N -0.596 5.596 11 C 0.119 3.881 12 C -0.136 4.136 13 C 0.100 3.900 14 C 0.128 3.872 15 C 0.130 3.870 16 N -0.610 5.610 17 C -0.352 4.352 18 H 0.054 0.946 19 C -0.068 4.068 20 N -0.940 5.940 21 Si 1.119 2.881 22 H -0.269 1.269 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.126 3.874 26 C 0.057 3.943 27 O -0.377 6.377 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.012 0.988 43 H 0.253 0.747 44 H 0.004 0.996 45 H 0.053 0.947 46 H 0.111 0.889 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.429 18.868 8.784 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 N -0.242 5.242 4 C -0.065 4.065 5 N -0.121 5.121 6 C -0.075 4.075 7 C -0.213 4.213 8 C 0.404 3.596 9 O -0.446 6.446 10 N -0.328 5.328 11 C -0.003 4.003 12 C -0.174 4.174 13 C 0.059 3.941 14 C 0.005 3.995 15 C 0.004 3.996 16 N -0.336 5.336 17 C -0.481 4.481 18 H 0.072 0.928 19 C -0.266 4.266 20 N -0.581 5.581 21 Si 0.943 3.057 22 H -0.193 1.193 23 H -0.222 1.222 24 H -0.213 1.213 25 C 0.000 4.000 26 C -0.021 4.021 27 O -0.296 6.296 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.272 0.728 32 H 0.114 0.886 33 H 0.148 0.852 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.072 0.928 46 H 0.129 0.871 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.374 18.568 8.077 20.950 hybrid contribution 0.179 -0.945 1.364 1.669 sum 5.553 17.623 9.441 20.750 Atomic orbital electron populations 1.20176 0.86393 1.03437 1.03075 1.21143 0.97220 0.86899 1.03328 1.70028 1.01641 1.30202 1.22334 1.25872 0.97631 0.81603 1.01405 1.45477 1.05672 1.08323 1.52594 1.22392 0.84062 0.95663 1.05421 1.20368 0.86518 0.93629 1.20777 1.16649 0.76935 0.83951 0.82054 1.90823 1.53590 1.68426 1.31767 1.48457 1.67630 1.10546 1.06129 1.22049 1.02272 0.96119 0.79832 1.22973 1.03863 0.92867 0.97740 1.22103 0.83038 0.94588 0.94410 1.22065 1.01124 0.80965 0.95349 1.21327 0.96754 0.94041 0.87492 1.44257 1.02007 1.80911 1.06412 1.20165 1.13006 1.13031 1.01946 0.92795 1.27335 0.99485 0.90799 1.08958 1.70846 1.41069 1.27524 1.18616 0.82815 0.75743 0.75892 0.71239 1.19347 1.22159 1.21341 1.21442 0.84554 0.95066 0.98906 1.23123 0.98034 0.96841 0.84069 1.87663 1.22004 1.90089 1.29842 0.90682 0.89345 0.91408 0.72830 0.88608 0.85247 0.91568 0.91171 0.89565 0.89524 0.89176 0.88228 0.90682 0.90849 0.96965 0.93713 0.97822 0.92800 0.87086 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.24 71.24 0.73 -0.79 16 2 C 0.05 1.17 7.15 41.97 0.30 1.47 16 3 N -0.52 -12.17 11.20 -187.59 -2.10 -14.27 16 4 C 0.22 3.56 12.52 180.33 2.26 5.82 16 5 N -0.44 -8.28 3.17 -539.83 -1.71 -9.99 16 6 C 0.07 0.82 11.05 127.77 1.41 2.23 16 7 C -0.10 -2.45 5.84 40.01 0.23 -2.22 16 8 C 0.62 18.27 6.79 86.47 0.59 18.86 16 9 O -0.57 -20.91 17.41 -4.29 -0.07 -20.98 16 10 N -0.60 -16.13 3.33 -817.18 -2.72 -18.85 16 11 C 0.12 2.77 6.48 86.76 0.56 3.33 16 12 C -0.14 -3.71 5.86 31.56 0.18 -3.52 16 13 C 0.10 3.21 0.84 -10.30 -0.01 3.20 16 14 C 0.13 3.73 6.07 86.55 0.53 4.26 16 15 C 0.13 5.10 5.37 85.87 0.46 5.56 16 16 N -0.61 -28.62 2.71 -699.67 -1.90 -30.51 16 17 C -0.35 -18.35 9.48 84.04 0.80 -17.56 16 18 H 0.05 2.79 7.92 -2.92 -0.02 2.77 16 19 C -0.07 -3.69 4.75 84.87 0.40 -3.29 16 20 N -0.94 -55.43 12.74 21.65 0.28 -55.16 16 21 Si 1.12 48.33 29.97 68.60 2.06 50.39 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 25 C 0.13 5.58 4.99 86.35 0.43 6.01 16 26 C 0.06 1.91 6.78 72.07 0.49 2.40 16 27 O -0.38 -12.88 10.29 -148.95 -1.53 -14.42 16 28 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 1.38 7.94 -2.39 -0.02 1.36 16 31 H 0.26 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 1.15 7.83 -2.39 -0.02 1.13 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.09 2.47 6.07 -2.39 -0.01 2.46 16 38 H 0.09 2.43 7.81 -2.39 -0.02 2.41 16 39 H 0.10 2.67 7.99 -2.39 -0.02 2.65 16 40 H 0.07 2.40 8.10 -2.39 -0.02 2.39 16 41 H 0.07 2.77 7.70 -2.38 -0.02 2.75 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.25 15.39 6.89 -92.71 -0.64 14.75 16 44 H 0.00 0.18 7.78 -2.38 -0.02 0.16 16 45 H 0.05 2.64 6.99 -2.39 -0.02 2.62 16 46 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 47 H 0.06 1.92 6.22 -2.39 -0.01 1.90 16 Total: -1.00 -73.82 378.79 2.76 -71.06 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.10 Total: 16.97 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 9.36 Total: 25.76 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -8.16 Total: -128.78 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.61 Total: -35.40 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.06 Total: 50.39 kcal Total: -73.82 2.76 -71.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972420305.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.091 kcal (2) G-P(sol) polarization free energy of solvation -73.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds