Wall clock time and date at job start Tue Mar 31 2020 17:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.33318 * 126.10544 * 2 1 4 4 C 1.30864 * 109.67821 * 180.26066 * 3 2 1 5 5 N 1.34490 * 109.16567 * 359.74493 * 4 3 2 6 6 C 1.46505 * 126.47381 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10355 * 179.83496 * 2 1 3 8 8 C 1.46761 * 126.84297 * 0.02562 * 7 2 1 9 9 O 1.21685 * 120.00638 * 277.87305 * 8 7 2 10 10 N 1.34787 * 119.99603 * 98.15700 * 8 7 2 11 11 C 1.47077 * 125.62995 * 4.77286 * 10 8 7 12 12 C 1.54467 * 107.29314 * 180.99585 * 11 10 8 13 13 C 1.54376 * 102.87356 * 21.50224 * 12 11 10 14 14 C 1.47575 * 125.62702 * 184.47388 * 10 8 7 15 15 C 1.52355 * 110.38071 * 207.59414 * 13 12 11 16 16 N 1.47324 * 108.45197 * 186.59622 * 15 13 12 17 17 C 1.36937 * 121.07988 * 229.14985 * 16 15 13 18 18 H 1.08000 * 120.00087 * 153.35969 * 17 16 15 19 19 C 1.38810 * 119.99952 * 333.37030 * 17 16 15 20 20 N 1.31616 * 120.00044 * 345.71000 * 19 17 16 21 21 Si 1.86798 * 119.99833 * 165.71860 * 19 17 16 22 22 H 1.48500 * 109.47180 * 89.99766 * 21 19 17 23 23 H 1.48498 * 109.47062 * 209.99321 * 21 19 17 24 24 H 1.48497 * 109.47348 * 329.99527 * 21 19 17 25 25 C 1.47172 * 117.84654 * 49.14038 * 16 15 13 26 26 C 1.53293 * 108.53140 * 308.71341 * 25 16 15 27 27 O 1.41874 * 110.72010 * 83.66844 * 13 12 11 28 28 H 1.08997 * 109.46758 * 270.17406 * 1 2 3 29 29 H 1.08997 * 109.46958 * 30.16794 * 1 2 3 30 30 H 1.08996 * 109.47383 * 150.17096 * 1 2 3 31 31 H 1.07996 * 125.41287 * 179.75363 * 4 3 2 32 32 H 1.09000 * 109.47203 * 274.48060 * 6 5 4 33 33 H 1.09000 * 109.46684 * 34.47643 * 6 5 4 34 34 H 1.08989 * 109.47226 * 154.47972 * 6 5 4 35 35 H 1.08998 * 109.87899 * 300.41706 * 11 10 8 36 36 H 1.08996 * 109.87703 * 61.42441 * 11 10 8 37 37 H 1.09000 * 110.73031 * 139.85027 * 12 11 10 38 38 H 1.08997 * 110.73333 * 263.15519 * 12 11 10 39 39 H 1.08999 * 110.37336 * 275.50258 * 14 10 8 40 40 H 1.09006 * 110.37647 * 37.85014 * 14 10 8 41 41 H 1.08996 * 109.64319 * 306.28880 * 15 13 12 42 42 H 1.09004 * 109.64077 * 66.70511 * 15 13 12 43 43 H 0.97000 * 119.99589 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.63020 * 68.42865 * 25 16 15 45 45 H 1.09002 * 109.62518 * 189.00846 * 25 16 15 46 46 H 1.08997 * 109.50898 * 172.98914 * 26 25 16 47 47 H 1.08995 * 109.51334 * 293.14354 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0056 5 7 3.6122 -0.6363 -0.0038 6 6 4.8305 -1.4499 -0.0080 7 6 2.3124 -1.1042 0.0032 8 6 1.8820 -2.5073 0.0067 9 8 1.5652 -3.0440 1.0518 10 7 1.8431 -3.2031 -1.1470 11 6 2.2961 -2.7142 -2.4581 12 6 2.0363 -3.8403 -3.4829 13 6 0.9505 -4.6917 -2.7905 14 6 1.3448 -4.5835 -1.3020 15 6 1.0325 -6.1392 -3.2586 16 7 -0.1138 -6.8760 -2.6987 17 6 0.0603 -8.0744 -2.0593 18 1 -0.6461 -8.3926 -1.3068 19 6 1.1449 -8.8800 -2.3780 20 7 1.8418 -8.6439 -3.4692 21 14 1.6150 -10.2993 -1.2582 22 1 0.8951 -11.5260 -1.6850 23 1 3.0795 -10.5309 -1.3409 24 1 1.2443 -9.9694 0.1414 25 6 -1.4521 -6.2824 -2.8486 26 6 -1.4007 -4.8331 -2.3520 27 8 -0.3382 -4.1441 -3.0189 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3634 -0.8915 -0.5111 31 1 4.3971 1.3743 -0.0107 32 1 5.1727 -1.5866 -1.0338 33 1 5.6057 -0.9462 0.5695 34 1 4.6197 -2.4222 0.4372 35 1 1.7334 -1.8231 -2.7360 36 1 3.3607 -2.4832 -2.4199 37 1 1.6643 -3.4295 -4.4215 38 1 2.9396 -4.4274 -3.6485 39 1 2.1304 -5.2998 -1.0617 40 1 0.4742 -4.7462 -0.6666 41 1 0.9945 -6.1749 -4.3474 42 1 1.9641 -6.5849 -2.9098 43 1 2.5995 -9.2071 -3.6921 44 1 -1.7448 -6.2996 -3.8984 45 1 -2.1716 -6.8472 -2.2557 46 1 -2.3479 -4.3398 -2.5698 47 1 -1.2227 -4.8228 -1.2767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972420306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:02 Heat of formation + Delta-G solvation = 23.746893 kcal Electronic energy + Delta-G solvation = -30717.533875 eV Core-core repulsion = 26709.828546 eV Total energy + Delta-G solvation = -4007.705329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32760 -40.13718 -38.47011 -36.18069 -34.63247 -34.50422 -32.07151 -31.35016 -31.09362 -29.18846 -28.68243 -27.60421 -26.40059 -25.63753 -23.64912 -23.31521 -22.04460 -21.14815 -20.69561 -19.14503 -18.83508 -17.66694 -17.03394 -16.54230 -16.26534 -15.80509 -15.41277 -15.22391 -14.85751 -14.56876 -14.39529 -14.22074 -13.70025 -13.55729 -13.43077 -13.30861 -13.18402 -12.88741 -12.81954 -12.66128 -12.44646 -12.20693 -12.16408 -11.91020 -11.42110 -11.15690 -11.10857 -10.89489 -10.78740 -10.53714 -10.43812 -10.33090 -10.00504 -9.88569 -9.74428 -9.60044 -9.13120 -8.61634 -8.50034 -8.47499 -6.79751 -5.90249 -3.33952 1.58950 2.14478 2.75246 2.86954 3.19443 3.30982 3.38375 3.41341 4.14438 4.33262 4.37136 4.41452 4.46449 4.76397 4.78221 4.84586 4.99217 5.07958 5.18003 5.20153 5.28419 5.34045 5.49887 5.60163 5.69217 5.76619 5.79089 5.83813 5.87525 5.96176 6.01148 6.02498 6.12327 6.16625 6.19890 6.37622 6.42114 6.49740 6.57903 6.74365 6.91543 6.99199 7.35400 7.52880 7.67092 7.83734 7.86300 8.12000 8.26787 9.05633 9.67750 10.24882 11.18221 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003676 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.904466 B = 7614.279211 C = 8204.818964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.058 3.942 3 N -0.492 5.492 4 C 0.196 3.804 5 N -0.440 5.440 6 C 0.068 3.932 7 C -0.066 4.066 8 C 0.606 3.394 9 O -0.527 6.527 10 N -0.600 5.600 11 C 0.109 3.891 12 C -0.115 4.115 13 C 0.086 3.914 14 C 0.095 3.905 15 C 0.164 3.836 16 N -0.595 5.595 17 C -0.251 4.251 18 H 0.069 0.931 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.110 3.890 26 C 0.044 3.956 27 O -0.372 6.372 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.210 0.790 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.034 0.966 42 H 0.098 0.902 43 H 0.255 0.745 44 H 0.028 0.972 45 H 0.063 0.937 46 H 0.084 0.916 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 16.006 1.820 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 N -0.211 5.211 4 C -0.086 4.086 5 N -0.124 5.124 6 C -0.074 4.074 7 C -0.182 4.182 8 C 0.391 3.609 9 O -0.402 6.402 10 N -0.333 5.333 11 C -0.014 4.014 12 C -0.153 4.153 13 C 0.044 3.956 14 C -0.026 4.026 15 C 0.038 3.962 16 N -0.319 5.319 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.215 1.215 24 H -0.204 1.204 25 C -0.017 4.017 26 C -0.033 4.033 27 O -0.291 6.291 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.227 0.773 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.046 0.954 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.964 16.477 2.294 17.360 hybrid contribution 0.845 -1.779 0.620 2.065 sum 5.809 14.697 2.914 16.070 Atomic orbital electron populations 1.20124 0.87056 1.03030 1.02789 1.20811 0.96415 0.86676 1.03532 1.70006 1.00350 1.30093 1.20631 1.24934 0.97196 0.81598 1.04862 1.45286 1.05881 1.07747 1.53483 1.22171 0.84636 0.96538 1.04081 1.20734 0.84688 0.94958 1.17809 1.16485 0.78654 0.82966 0.82788 1.90861 1.49372 1.69274 1.30683 1.48599 1.61406 1.15785 1.07488 1.22020 0.98489 0.98158 0.82723 1.22548 0.98664 0.95931 0.98198 1.22763 0.83574 0.97142 0.92145 1.22886 1.00302 0.80791 0.98634 1.21179 0.93872 0.84735 0.96453 1.44109 0.99743 1.21233 1.66834 1.19192 1.10273 0.94636 1.13923 0.91339 1.25030 1.00230 0.97783 0.96420 1.69977 1.21446 1.40528 1.23156 0.86282 0.77593 0.82326 0.80558 1.21271 1.21489 1.20353 1.21602 0.89464 0.92149 0.98436 1.23119 0.89382 0.94645 0.96203 1.87625 1.14452 1.55090 1.71935 0.90824 0.90596 0.91126 0.77347 0.89833 0.88868 0.89443 0.91260 0.92312 0.89063 0.88900 0.90027 0.89695 0.94810 0.88357 0.93499 0.95435 0.91828 0.89772 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.24 36.01 0.37 -0.56 16 2 C 0.06 0.85 7.15 -82.51 -0.59 0.26 16 3 N -0.49 -6.71 11.20 -10.64 -0.12 -6.83 16 4 C 0.20 2.03 12.52 -90.57 -1.13 0.90 16 5 N -0.44 -4.90 3.17 -121.98 -0.39 -5.29 16 6 C 0.07 0.51 11.06 59.85 0.66 1.17 16 7 C -0.07 -0.96 5.84 -82.14 -0.48 -1.44 16 8 C 0.61 10.27 6.77 -12.81 -0.09 10.18 16 9 O -0.53 -10.85 17.41 5.20 0.09 -10.76 16 10 N -0.60 -9.61 3.33 -172.11 -0.57 -10.18 16 11 C 0.11 1.44 6.48 -2.96 -0.02 1.42 16 12 C -0.12 -1.64 6.11 -25.24 -0.15 -1.80 16 13 C 0.09 1.55 0.83 -89.52 -0.07 1.48 16 14 C 0.10 1.75 5.85 -2.74 -0.02 1.74 16 15 C 0.16 3.62 4.04 -3.92 -0.02 3.61 16 16 N -0.60 -14.20 2.99 -172.24 -0.52 -14.72 16 17 C -0.25 -6.58 9.67 -15.06 -0.15 -6.73 16 18 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 19 C 0.00 0.10 5.01 -17.43 -0.09 0.01 16 20 N -0.91 -24.81 11.04 55.49 0.61 -24.20 16 21 Si 0.90 21.02 29.58 -169.99 -5.03 15.99 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.11 2.23 6.71 -3.52 -0.02 2.20 16 26 C 0.04 0.78 6.79 37.31 0.25 1.04 16 27 O -0.37 -6.88 10.28 -35.22 -0.36 -7.24 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 31 H 0.21 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.09 0.80 7.80 -51.94 -0.41 0.40 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 39 H 0.08 1.59 7.82 -51.93 -0.41 1.18 16 40 H 0.08 1.74 6.10 -51.93 -0.32 1.42 16 41 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.10 2.38 5.93 -51.93 -0.31 2.08 16 43 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 46 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.05 0.86 6.29 -51.93 -0.33 0.54 16 LS Contribution 378.90 15.07 5.71 5.71 Total: -1.00 -33.15 378.90 -9.32 -42.47 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.20 Total: 1.56 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: -1.54 Total: 13.49 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: -0.98 Total: -61.22 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.27 Total: -18.00 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.15 -9.32 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972420306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.216 kcal (2) G-P(sol) polarization free energy of solvation -33.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds