Wall clock time and date at job start Tue Mar 31 2020 17:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 N 1.33318 * 126.10544 * 2 1 4 4 C 1.30864 * 109.67821 * 180.26066 * 3 2 1 5 5 N 1.34490 * 109.16567 * 359.74493 * 4 3 2 6 6 C 1.46505 * 126.47381 * 180.02562 * 5 4 3 7 7 C 1.36665 * 126.10355 * 179.83496 * 2 1 3 8 8 C 1.46761 * 126.84297 * 0.02562 * 7 2 1 9 9 O 1.21685 * 120.00638 * 277.87305 * 8 7 2 10 10 N 1.34787 * 119.99603 * 98.15700 * 8 7 2 11 11 C 1.47077 * 125.62995 * 4.77286 * 10 8 7 12 12 C 1.54467 * 107.29314 * 180.99585 * 11 10 8 13 13 C 1.54376 * 102.87356 * 21.50224 * 12 11 10 14 14 C 1.47575 * 125.62702 * 184.47388 * 10 8 7 15 15 C 1.52355 * 110.38071 * 207.59414 * 13 12 11 16 16 N 1.47324 * 108.45197 * 186.59622 * 15 13 12 17 17 C 1.36937 * 121.07988 * 229.14985 * 16 15 13 18 18 H 1.08000 * 120.00087 * 153.35969 * 17 16 15 19 19 C 1.38810 * 119.99952 * 333.37030 * 17 16 15 20 20 N 1.31616 * 120.00044 * 345.71000 * 19 17 16 21 21 Si 1.86798 * 119.99833 * 165.71860 * 19 17 16 22 22 H 1.48500 * 109.47180 * 89.99766 * 21 19 17 23 23 H 1.48498 * 109.47062 * 209.99321 * 21 19 17 24 24 H 1.48497 * 109.47348 * 329.99527 * 21 19 17 25 25 C 1.47172 * 117.84654 * 49.14038 * 16 15 13 26 26 C 1.53293 * 108.53140 * 308.71341 * 25 16 15 27 27 O 1.41874 * 110.72010 * 83.66844 * 13 12 11 28 28 H 1.08997 * 109.46758 * 270.17406 * 1 2 3 29 29 H 1.08997 * 109.46958 * 30.16794 * 1 2 3 30 30 H 1.08996 * 109.47383 * 150.17096 * 1 2 3 31 31 H 1.07996 * 125.41287 * 179.75363 * 4 3 2 32 32 H 1.09000 * 109.47203 * 274.48060 * 6 5 4 33 33 H 1.09000 * 109.46684 * 34.47643 * 6 5 4 34 34 H 1.08989 * 109.47226 * 154.47972 * 6 5 4 35 35 H 1.08998 * 109.87899 * 300.41706 * 11 10 8 36 36 H 1.08996 * 109.87703 * 61.42441 * 11 10 8 37 37 H 1.09000 * 110.73031 * 139.85027 * 12 11 10 38 38 H 1.08997 * 110.73333 * 263.15519 * 12 11 10 39 39 H 1.08999 * 110.37336 * 275.50258 * 14 10 8 40 40 H 1.09006 * 110.37647 * 37.85014 * 14 10 8 41 41 H 1.08996 * 109.64319 * 306.28880 * 15 13 12 42 42 H 1.09004 * 109.64077 * 66.70511 * 15 13 12 43 43 H 0.97000 * 119.99589 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.63020 * 68.42865 * 25 16 15 45 45 H 1.09002 * 109.62518 * 189.00846 * 25 16 15 46 46 H 1.08997 * 109.50898 * 172.98914 * 26 25 16 47 47 H 1.08995 * 109.51334 * 293.14354 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5479 0.7071 -0.0056 5 7 3.6122 -0.6363 -0.0038 6 6 4.8305 -1.4499 -0.0080 7 6 2.3124 -1.1042 0.0032 8 6 1.8820 -2.5073 0.0067 9 8 1.5652 -3.0440 1.0518 10 7 1.8431 -3.2031 -1.1470 11 6 2.2961 -2.7142 -2.4581 12 6 2.0363 -3.8403 -3.4829 13 6 0.9505 -4.6917 -2.7905 14 6 1.3448 -4.5835 -1.3020 15 6 1.0325 -6.1392 -3.2586 16 7 -0.1138 -6.8760 -2.6987 17 6 0.0603 -8.0744 -2.0593 18 1 -0.6461 -8.3926 -1.3068 19 6 1.1449 -8.8800 -2.3780 20 7 1.8418 -8.6439 -3.4692 21 14 1.6150 -10.2993 -1.2582 22 1 0.8951 -11.5260 -1.6850 23 1 3.0795 -10.5309 -1.3409 24 1 1.2443 -9.9694 0.1414 25 6 -1.4521 -6.2824 -2.8486 26 6 -1.4007 -4.8331 -2.3520 27 8 -0.3382 -4.1441 -3.0189 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8885 -0.5164 30 1 -0.3634 -0.8915 -0.5111 31 1 4.3971 1.3743 -0.0107 32 1 5.1727 -1.5866 -1.0338 33 1 5.6057 -0.9462 0.5695 34 1 4.6197 -2.4222 0.4372 35 1 1.7334 -1.8231 -2.7360 36 1 3.3607 -2.4832 -2.4199 37 1 1.6643 -3.4295 -4.4215 38 1 2.9396 -4.4274 -3.6485 39 1 2.1304 -5.2998 -1.0617 40 1 0.4742 -4.7462 -0.6666 41 1 0.9945 -6.1749 -4.3474 42 1 1.9641 -6.5849 -2.9098 43 1 2.5995 -9.2071 -3.6921 44 1 -1.7448 -6.2996 -3.8984 45 1 -2.1716 -6.8472 -2.2557 46 1 -2.3479 -4.3398 -2.5698 47 1 -1.2227 -4.8228 -1.2767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972420306.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:01 Heat of formation + Delta-G solvation = 2.634626 kcal Electronic energy + Delta-G solvation = -30718.449372 eV Core-core repulsion = 26709.828546 eV Total energy + Delta-G solvation = -4008.620826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.25873 -41.54487 -39.91318 -37.62784 -36.28580 -35.45925 -33.46738 -33.19307 -32.20121 -30.53428 -29.75984 -29.08442 -27.67959 -26.86528 -25.15459 -24.86808 -23.17344 -22.67011 -21.61927 -20.51686 -20.18615 -18.98071 -18.69586 -17.77067 -17.55835 -16.98113 -16.72581 -16.48692 -16.26089 -16.09095 -15.73199 -15.58096 -15.23342 -14.98540 -14.65081 -14.60856 -14.44954 -14.16694 -13.93902 -13.68362 -13.57681 -13.36735 -13.26054 -13.14909 -13.02056 -12.86913 -12.72185 -12.51634 -12.35505 -12.18715 -12.17137 -11.83055 -11.66251 -11.18907 -11.01367 -10.80205 -10.61759 -10.54474 -9.85360 -9.46737 -8.72402 -7.91717 -5.37900 0.62461 1.06039 1.43650 1.46220 1.54806 1.59281 1.95613 2.10290 2.45685 2.73687 3.18064 3.26970 3.46473 3.51491 3.60841 3.73776 3.80627 3.96502 4.10865 4.17079 4.20860 4.25722 4.29688 4.32066 4.43284 4.51964 4.58140 4.62541 4.69483 4.70033 4.72579 4.81413 4.87278 4.91205 4.98564 5.00141 5.06616 5.12384 5.13875 5.22117 5.48515 5.51338 5.60107 6.14211 6.24491 6.28352 6.36329 6.80558 6.92751 7.07119 7.73743 8.27794 9.14300 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.003676 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.904466 B = 7614.279211 C = 8204.818964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.048 3.952 3 N -0.523 5.523 4 C 0.220 3.780 5 N -0.438 5.438 6 C 0.062 3.938 7 C -0.093 4.093 8 C 0.611 3.389 9 O -0.575 6.575 10 N -0.596 5.596 11 C 0.114 3.886 12 C -0.108 4.108 13 C 0.092 3.908 14 C 0.105 3.895 15 C 0.175 3.825 16 N -0.615 5.615 17 C -0.263 4.263 18 H 0.065 0.935 19 C -0.041 4.041 20 N -0.930 5.930 21 Si 0.961 3.039 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.107 3.893 26 C 0.052 3.948 27 O -0.372 6.372 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.259 0.741 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.012 0.988 42 H 0.073 0.927 43 H 0.253 0.747 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.120 0.880 47 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 18.311 1.551 19.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 N -0.242 5.242 4 C -0.062 4.062 5 N -0.121 5.121 6 C -0.079 4.079 7 C -0.209 4.209 8 C 0.398 3.602 9 O -0.454 6.454 10 N -0.328 5.328 11 C -0.007 4.007 12 C -0.146 4.146 13 C 0.049 3.951 14 C -0.018 4.018 15 C 0.049 3.951 16 N -0.339 5.339 17 C -0.393 4.393 18 H 0.083 0.917 19 C -0.236 4.236 20 N -0.576 5.576 21 Si 0.789 3.211 22 H -0.211 1.211 23 H -0.214 1.214 24 H -0.202 1.202 25 C -0.019 4.019 26 C -0.026 4.026 27 O -0.291 6.291 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.077 0.923 31 H 0.275 0.725 32 H 0.123 0.877 33 H 0.147 0.853 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.138 0.862 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.418 18.798 1.997 19.964 hybrid contribution 0.389 -2.471 0.701 2.598 sum 6.806 16.327 2.699 17.893 Atomic orbital electron populations 1.20120 0.86901 1.03084 1.02793 1.21044 0.97022 0.87073 1.03353 1.70025 1.01732 1.30000 1.22459 1.25907 0.97539 0.81620 1.01121 1.45490 1.05504 1.08335 1.52755 1.22471 0.83906 0.95549 1.05986 1.20333 0.86667 0.93222 1.20691 1.16803 0.77573 0.83799 0.82039 1.90824 1.51527 1.70622 1.32387 1.48597 1.60903 1.14683 1.08576 1.22148 1.00382 0.97579 0.80613 1.22599 0.97473 0.95663 0.98865 1.22567 0.84692 0.95471 0.92332 1.22539 0.98774 0.82147 0.98330 1.20949 0.92387 0.86919 0.94856 1.44368 1.01593 1.21125 1.66822 1.19441 1.10304 0.95577 1.13975 0.91712 1.25656 1.00376 1.00010 0.97603 1.70104 1.21740 1.41394 1.24366 0.85382 0.77045 0.79730 0.78950 1.21079 1.21450 1.20200 1.21744 0.87971 0.93707 0.98467 1.23117 0.90738 0.93232 0.95494 1.87635 1.14581 1.54893 1.71949 0.90887 0.89216 0.92266 0.72492 0.87662 0.85271 0.91732 0.90499 0.89273 0.87408 0.88012 0.91804 0.92261 0.96998 0.90899 0.93812 0.95655 0.91367 0.86198 0.94437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.80 10.24 71.24 0.73 -1.07 16 2 C 0.05 1.33 7.15 41.97 0.30 1.63 16 3 N -0.52 -12.95 11.20 -187.58 -2.10 -15.05 16 4 C 0.22 3.71 12.52 180.33 2.26 5.97 16 5 N -0.44 -8.47 3.17 -539.82 -1.71 -10.18 16 6 C 0.06 0.72 11.06 127.77 1.41 2.13 16 7 C -0.09 -2.59 5.84 40.01 0.23 -2.35 16 8 C 0.61 20.81 6.77 86.47 0.59 21.39 16 9 O -0.57 -24.55 17.41 -4.30 -0.07 -24.62 16 10 N -0.60 -18.92 3.33 -816.66 -2.72 -21.64 16 11 C 0.11 2.78 6.48 86.77 0.56 3.35 16 12 C -0.11 -2.91 6.11 31.56 0.19 -2.72 16 13 C 0.09 3.32 0.83 -10.08 -0.01 3.31 16 14 C 0.10 3.96 5.85 86.64 0.51 4.47 16 15 C 0.18 7.95 4.04 86.01 0.35 8.30 16 16 N -0.61 -30.10 2.99 -698.85 -2.09 -32.19 16 17 C -0.26 -14.16 9.67 84.03 0.81 -13.35 16 18 H 0.07 3.45 7.87 -2.91 -0.02 3.43 16 19 C -0.04 -2.19 5.01 84.86 0.43 -1.77 16 20 N -0.93 -52.15 11.04 21.65 0.24 -51.91 16 21 Si 0.96 43.99 29.58 68.60 2.03 46.02 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 C 0.11 4.36 6.71 86.35 0.58 4.94 16 26 C 0.05 1.80 6.79 72.08 0.49 2.29 16 27 O -0.37 -13.47 10.28 -148.95 -1.53 -15.00 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.59 7.94 -2.39 -0.02 1.57 16 31 H 0.26 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 1.09 7.80 -2.39 -0.02 1.07 16 35 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.10 2.58 8.00 -2.39 -0.02 2.57 16 39 H 0.06 2.62 7.82 -2.39 -0.02 2.60 16 40 H 0.06 2.54 6.10 -2.38 -0.01 2.53 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 3.67 5.93 -2.38 -0.01 3.66 16 43 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 44 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 46 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.04 1.40 6.29 -2.39 -0.02 1.38 16 Total: -1.00 -75.03 378.90 2.44 -72.60 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.97 Total: 15.48 kcal Atomic # 6 Polarization: 27.09 SS G_CDS: 9.43 Total: 36.52 kcal Atomic # 7 Polarization: -122.60 SS G_CDS: -8.39 Total: -130.98 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.61 Total: -39.63 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -75.03 2.44 -72.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972420306.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.230 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds