Wall clock time and date at job start Tue Mar 31 2020 17:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34662 * 126.59165 * 2 1 4 4 N 1.34128 * 108.01999 * 179.87599 * 3 2 1 5 5 C 1.30495 * 109.25783 * 0.39754 * 4 3 2 6 6 N 1.35050 * 108.69903 * 359.75731 * 5 4 3 7 7 C 1.46496 * 126.39554 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47081 * 264.99619 * 7 6 5 9 9 O 1.21282 * 120.00134 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00222 * 180.02562 * 8 7 6 11 11 C 1.47486 * 125.65908 * 359.69150 * 10 8 7 12 12 C 1.55259 * 104.78029 * 155.91423 * 11 10 8 13 13 C 1.54516 * 101.42521 * 36.67805 * 12 11 10 14 14 C 1.47177 * 125.66194 * 180.02562 * 10 8 7 15 15 C 1.52520 * 110.05556 * 206.73919 * 13 12 11 16 16 N 1.47308 * 108.40880 * 287.85123 * 15 13 12 17 17 C 1.36934 * 121.06291 * 130.61313 * 16 15 13 18 18 H 1.07998 * 120.00229 * 205.77436 * 17 16 15 19 19 C 1.38815 * 119.99878 * 25.76437 * 17 16 15 20 20 N 1.31622 * 120.00072 * 16.74554 * 19 17 16 21 21 Si 1.86797 * 120.00161 * 196.74321 * 19 17 16 22 22 H 1.48502 * 109.47318 * 90.00259 * 21 19 17 23 23 H 1.48504 * 109.47216 * 210.00408 * 21 19 17 24 24 H 1.48504 * 109.46882 * 330.00339 * 21 19 17 25 25 C 1.47158 * 117.87524 * 310.62853 * 16 15 13 26 26 C 1.53285 * 108.54175 * 51.14035 * 25 16 15 27 27 O 1.42068 * 110.33846 * 83.75079 * 13 12 11 28 28 H 1.09002 * 109.47293 * 269.68725 * 1 2 3 29 29 H 1.09005 * 109.47163 * 149.68897 * 1 2 3 30 30 H 1.08996 * 109.47441 * 29.68807 * 1 2 3 31 31 H 1.07996 * 125.99146 * 0.02562 * 3 2 1 32 32 H 1.07998 * 125.65243 * 179.73416 * 5 4 3 33 33 H 1.08994 * 109.47443 * 24.99723 * 7 6 5 34 34 H 1.09003 * 109.47069 * 144.99694 * 7 6 5 35 35 H 1.09003 * 110.35342 * 274.86281 * 11 10 8 36 36 H 1.08999 * 110.35308 * 37.15940 * 11 10 8 37 37 H 1.08991 * 111.21411 * 278.58610 * 12 11 10 38 38 H 1.08994 * 110.94124 * 154.64671 * 12 11 10 39 39 H 1.08999 * 109.91503 * 300.84214 * 14 10 8 40 40 H 1.09002 * 109.90983 * 62.10898 * 14 10 8 41 41 H 1.08996 * 109.67824 * 47.58281 * 15 13 12 42 42 H 1.08998 * 109.67214 * 168.12493 * 15 13 12 43 43 H 0.96997 * 120.00190 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.63054 * 291.42279 * 25 16 15 45 45 H 1.09002 * 109.78272 * 170.94277 * 25 16 15 46 46 H 1.09001 * 109.51551 * 187.15519 * 26 25 16 47 47 H 1.09003 * 109.51223 * 67.00255 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5811 0.6540 0.0028 5 6 3.5968 -0.6508 -0.0041 6 7 2.3229 -1.0991 -0.0061 7 6 1.8943 -2.4999 -0.0127 8 6 1.6287 -2.9372 -1.4302 9 8 1.7826 -2.1558 -2.3449 10 7 1.2200 -4.1967 -1.6816 11 6 0.9995 -5.2471 -0.6700 12 6 -0.0077 -6.2273 -1.3299 13 6 0.4620 -6.2039 -2.8017 14 6 0.9263 -4.7542 -3.0117 15 6 -0.7041 -6.5327 -3.7282 16 7 -1.0142 -7.9666 -3.5949 17 6 -2.2979 -8.3955 -3.3869 18 1 -2.4787 -9.3377 -2.8910 19 6 -3.3667 -7.6191 -3.8132 20 7 -3.1729 -6.6574 -4.6906 21 14 -5.0802 -7.9394 -3.1418 22 1 -5.2944 -7.1213 -1.9211 23 1 -6.0901 -7.5727 -4.1670 24 1 -5.2182 -9.3788 -2.8036 25 6 0.0997 -8.9233 -3.6920 26 6 1.2084 -8.4798 -2.7310 27 8 1.5381 -7.1119 -2.9912 28 1 -0.3634 -0.0056 1.0277 29 1 -0.3634 -0.8872 -0.5187 30 1 -0.3634 0.8927 -0.5090 31 1 1.9864 2.1117 0.0004 32 1 4.4818 -1.2697 -0.0079 33 1 2.6787 -3.1219 0.4184 34 1 0.9831 -2.6040 0.5764 35 1 1.9356 -5.7574 -0.4431 36 1 0.5716 -4.8174 0.2357 37 1 -1.0304 -5.8615 -1.2401 38 1 0.0865 -7.2268 -0.9055 39 1 0.1349 -4.1768 -3.4897 40 1 1.8253 -4.7377 -3.6278 41 1 -1.5750 -5.9411 -3.4461 42 1 -0.4275 -6.3112 -4.7590 43 1 -3.9198 -6.1151 -4.9888 44 1 0.4832 -8.9364 -4.7122 45 1 -0.2453 -9.9202 -3.4178 46 1 2.0908 -9.1019 -2.8810 47 1 0.8611 -8.5813 -1.7028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972466345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:10 Heat of formation + Delta-G solvation = 27.350244 kcal Electronic energy + Delta-G solvation = -29901.853390 eV Core-core repulsion = 25894.304313 eV Total energy + Delta-G solvation = -4007.549076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.24210 -40.36068 -38.87192 -36.30310 -34.58170 -34.16591 -32.09319 -31.70724 -31.34595 -29.69890 -28.49340 -27.28213 -26.51794 -25.48755 -23.76814 -22.86080 -21.66242 -21.47615 -20.44930 -19.35976 -18.91616 -17.59654 -17.36920 -17.05685 -16.24417 -15.62216 -15.60505 -15.17938 -14.69190 -14.62747 -14.44787 -14.27694 -13.99078 -13.68916 -13.51463 -13.24029 -13.09463 -12.96899 -12.86241 -12.82860 -12.55583 -12.50430 -12.34819 -12.16630 -11.48660 -11.25053 -11.12420 -10.95769 -10.80732 -10.44434 -10.38691 -10.35385 -10.06663 -10.03144 -9.68185 -9.54300 -9.18231 -8.71192 -8.64599 -8.35311 -6.87254 -5.95152 -3.38449 1.82772 2.38276 2.44749 2.97405 3.14344 3.25663 3.33397 3.35282 4.04000 4.21065 4.33153 4.34813 4.57020 4.62885 4.63556 4.68886 4.88970 5.02864 5.08917 5.25021 5.30248 5.32534 5.37365 5.40428 5.49092 5.65970 5.66671 5.71907 5.72768 5.83284 5.91152 5.99181 6.10423 6.19163 6.25660 6.27541 6.36961 6.49843 6.67219 6.67966 6.93320 7.03303 7.31224 7.38527 7.60974 7.77194 7.95080 8.00135 8.20746 8.99381 9.62419 10.19416 11.13197 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003070 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.695004 B = 9117.225699 C =10180.746058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.012 4.012 3 C -0.031 4.031 4 N -0.492 5.492 5 C 0.188 3.812 6 N -0.442 5.442 7 C 0.091 3.909 8 C 0.508 3.492 9 O -0.523 6.523 10 N -0.609 5.609 11 C 0.096 3.904 12 C -0.144 4.144 13 C 0.086 3.914 14 C 0.127 3.873 15 C 0.163 3.837 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.108 3.892 26 C 0.046 3.954 27 O -0.377 6.377 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.168 0.832 32 H 0.202 0.798 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.256 0.744 44 H 0.027 0.973 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 4.829 12.501 15.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C -0.178 4.178 4 N -0.210 5.210 5 C -0.094 4.094 6 N -0.126 5.126 7 C -0.036 4.036 8 C 0.294 3.706 9 O -0.399 6.399 10 N -0.344 5.344 11 C -0.027 4.027 12 C -0.182 4.182 13 C 0.044 3.956 14 C 0.005 3.995 15 C 0.037 3.963 16 N -0.316 5.316 17 C -0.384 4.384 18 H 0.087 0.913 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.018 4.018 26 C -0.031 4.031 27 O -0.296 6.296 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.185 0.815 32 H 0.219 0.781 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.352 5.862 11.879 16.215 hybrid contribution -1.824 -1.035 0.248 2.111 sum 7.528 4.828 12.127 15.068 Atomic orbital electron populations 1.20224 0.87325 1.03762 1.02333 1.21235 0.94562 0.86666 1.10120 1.21984 0.88390 0.98310 1.09138 1.70245 1.22459 1.08724 1.19542 1.24850 0.86908 0.91846 1.05795 1.44891 1.07504 1.05325 1.54883 1.21635 1.04440 0.81353 0.96211 1.20249 0.78309 0.81087 0.90977 1.90800 1.51385 1.51698 1.45977 1.48575 1.65969 1.10154 1.09663 1.22570 0.99828 0.89027 0.91257 1.23230 0.99032 0.99671 0.96222 1.22652 0.89547 0.87770 0.95649 1.21831 1.01710 0.92156 0.83825 1.21201 0.93741 0.86497 0.94858 1.44070 1.02925 0.99991 1.84610 1.19172 0.81455 1.06156 1.31608 0.91252 1.25045 0.98057 0.99484 0.96952 1.70007 1.30945 1.23229 1.30436 0.86268 0.84100 0.77999 0.78276 1.21373 1.21634 1.20384 1.21593 0.89371 0.94274 0.96579 1.23118 0.98794 0.82325 0.98911 1.87674 1.35415 1.16565 1.89988 0.90987 0.91786 0.89826 0.81507 0.78108 0.85856 0.86315 0.90911 0.90942 0.89326 0.89121 0.89488 0.90497 0.88407 0.95202 0.93362 0.95525 0.91831 0.89841 0.93353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.08 36.00 0.36 -0.38 16 2 C -0.01 -0.14 6.95 -81.60 -0.57 -0.71 16 3 C -0.03 -0.41 11.79 -17.81 -0.21 -0.62 16 4 N -0.49 -7.07 11.25 -14.67 -0.17 -7.24 16 5 C 0.19 2.29 12.56 -90.37 -1.13 1.15 16 6 N -0.44 -5.17 2.24 -115.28 -0.26 -5.43 16 7 C 0.09 0.84 5.28 -5.20 -0.03 0.81 16 8 C 0.51 6.92 7.92 -10.98 -0.09 6.83 16 9 O -0.52 -9.50 16.76 5.56 0.09 -9.41 16 10 N -0.61 -8.24 3.33 -170.53 -0.57 -8.80 16 11 C 0.10 1.05 6.70 -2.31 -0.02 1.04 16 12 C -0.14 -2.09 5.93 -24.74 -0.15 -2.23 16 13 C 0.09 1.48 0.83 -89.72 -0.07 1.40 16 14 C 0.13 2.08 6.24 -3.33 -0.02 2.06 16 15 C 0.16 3.57 3.95 -3.85 -0.02 3.56 16 16 N -0.59 -13.56 2.95 -172.18 -0.51 -14.07 16 17 C -0.25 -6.41 9.66 -15.06 -0.15 -6.56 16 18 H 0.07 1.71 7.88 -52.49 -0.41 1.30 16 19 C 0.00 0.09 4.96 -17.43 -0.09 0.01 16 20 N -0.90 -24.66 11.12 55.49 0.62 -24.05 16 21 Si 0.90 20.34 29.59 -169.99 -5.03 15.31 16 22 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.11 2.07 6.71 -3.54 -0.02 2.05 16 26 C 0.05 0.73 6.76 37.31 0.25 0.98 16 27 O -0.38 -6.54 10.22 -35.23 -0.36 -6.90 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.67 7.96 -51.93 -0.41 0.25 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.12 0.84 7.73 -51.93 -0.40 0.44 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.58 7.48 -51.93 -0.39 0.19 16 37 H 0.09 1.41 7.86 -51.93 -0.41 1.00 16 38 H 0.09 1.31 5.98 -51.93 -0.31 0.99 16 39 H 0.09 1.53 7.79 -51.93 -0.40 1.12 16 40 H 0.08 1.32 8.06 -51.93 -0.42 0.90 16 41 H 0.10 2.37 5.96 -51.93 -0.31 2.06 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 46 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.72 6.14 -51.93 -0.32 0.40 16 LS Contribution 377.32 15.07 5.69 5.69 Total: -1.00 -33.30 377.32 -9.57 -42.87 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.14 Total: 2.64 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -1.94 Total: 9.38 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.88 Total: -59.58 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.27 Total: -16.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.30 -9.57 -42.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972466345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.221 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds