Wall clock time and date at job start Tue Mar 31 2020 17:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34662 * 126.59165 * 2 1 4 4 N 1.34128 * 108.01999 * 179.87599 * 3 2 1 5 5 C 1.30495 * 109.25783 * 0.39754 * 4 3 2 6 6 N 1.35050 * 108.69903 * 359.75731 * 5 4 3 7 7 C 1.46496 * 126.39554 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47081 * 264.99619 * 7 6 5 9 9 O 1.21282 * 120.00134 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00222 * 180.02562 * 8 7 6 11 11 C 1.47486 * 125.65908 * 359.69150 * 10 8 7 12 12 C 1.55259 * 104.78029 * 155.91423 * 11 10 8 13 13 C 1.54516 * 101.42521 * 36.67805 * 12 11 10 14 14 C 1.47177 * 125.66194 * 180.02562 * 10 8 7 15 15 C 1.52520 * 110.05556 * 206.73919 * 13 12 11 16 16 N 1.47308 * 108.40880 * 287.85123 * 15 13 12 17 17 C 1.36934 * 121.06291 * 130.61313 * 16 15 13 18 18 H 1.07998 * 120.00229 * 205.77436 * 17 16 15 19 19 C 1.38815 * 119.99878 * 25.76437 * 17 16 15 20 20 N 1.31622 * 120.00072 * 16.74554 * 19 17 16 21 21 Si 1.86797 * 120.00161 * 196.74321 * 19 17 16 22 22 H 1.48502 * 109.47318 * 90.00259 * 21 19 17 23 23 H 1.48504 * 109.47216 * 210.00408 * 21 19 17 24 24 H 1.48504 * 109.46882 * 330.00339 * 21 19 17 25 25 C 1.47158 * 117.87524 * 310.62853 * 16 15 13 26 26 C 1.53285 * 108.54175 * 51.14035 * 25 16 15 27 27 O 1.42068 * 110.33846 * 83.75079 * 13 12 11 28 28 H 1.09002 * 109.47293 * 269.68725 * 1 2 3 29 29 H 1.09005 * 109.47163 * 149.68897 * 1 2 3 30 30 H 1.08996 * 109.47441 * 29.68807 * 1 2 3 31 31 H 1.07996 * 125.99146 * 0.02562 * 3 2 1 32 32 H 1.07998 * 125.65243 * 179.73416 * 5 4 3 33 33 H 1.08994 * 109.47443 * 24.99723 * 7 6 5 34 34 H 1.09003 * 109.47069 * 144.99694 * 7 6 5 35 35 H 1.09003 * 110.35342 * 274.86281 * 11 10 8 36 36 H 1.08999 * 110.35308 * 37.15940 * 11 10 8 37 37 H 1.08991 * 111.21411 * 278.58610 * 12 11 10 38 38 H 1.08994 * 110.94124 * 154.64671 * 12 11 10 39 39 H 1.08999 * 109.91503 * 300.84214 * 14 10 8 40 40 H 1.09002 * 109.90983 * 62.10898 * 14 10 8 41 41 H 1.08996 * 109.67824 * 47.58281 * 15 13 12 42 42 H 1.08998 * 109.67214 * 168.12493 * 15 13 12 43 43 H 0.96997 * 120.00190 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.63054 * 291.42279 * 25 16 15 45 45 H 1.09002 * 109.78272 * 170.94277 * 25 16 15 46 46 H 1.09001 * 109.51551 * 187.15519 * 26 25 16 47 47 H 1.09003 * 109.51223 * 67.00255 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0812 0.0000 4 7 3.5811 0.6540 0.0028 5 6 3.5968 -0.6508 -0.0041 6 7 2.3229 -1.0991 -0.0061 7 6 1.8943 -2.4999 -0.0127 8 6 1.6287 -2.9372 -1.4302 9 8 1.7826 -2.1558 -2.3449 10 7 1.2200 -4.1967 -1.6816 11 6 0.9995 -5.2471 -0.6700 12 6 -0.0077 -6.2273 -1.3299 13 6 0.4620 -6.2039 -2.8017 14 6 0.9263 -4.7542 -3.0117 15 6 -0.7041 -6.5327 -3.7282 16 7 -1.0142 -7.9666 -3.5949 17 6 -2.2979 -8.3955 -3.3869 18 1 -2.4787 -9.3377 -2.8910 19 6 -3.3667 -7.6191 -3.8132 20 7 -3.1729 -6.6574 -4.6906 21 14 -5.0802 -7.9394 -3.1418 22 1 -5.2944 -7.1213 -1.9211 23 1 -6.0901 -7.5727 -4.1670 24 1 -5.2182 -9.3788 -2.8036 25 6 0.0997 -8.9233 -3.6920 26 6 1.2084 -8.4798 -2.7310 27 8 1.5381 -7.1119 -2.9912 28 1 -0.3634 -0.0056 1.0277 29 1 -0.3634 -0.8872 -0.5187 30 1 -0.3634 0.8927 -0.5090 31 1 1.9864 2.1117 0.0004 32 1 4.4818 -1.2697 -0.0079 33 1 2.6787 -3.1219 0.4184 34 1 0.9831 -2.6040 0.5764 35 1 1.9356 -5.7574 -0.4431 36 1 0.5716 -4.8174 0.2357 37 1 -1.0304 -5.8615 -1.2401 38 1 0.0865 -7.2268 -0.9055 39 1 0.1349 -4.1768 -3.4897 40 1 1.8253 -4.7377 -3.6278 41 1 -1.5750 -5.9411 -3.4461 42 1 -0.4275 -6.3112 -4.7590 43 1 -3.9198 -6.1151 -4.9888 44 1 0.4832 -8.9364 -4.7122 45 1 -0.2453 -9.9202 -3.4178 46 1 2.0908 -9.1019 -2.8810 47 1 0.8611 -8.5813 -1.7028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972466345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:09 Heat of formation + Delta-G solvation = 6.244235 kcal Electronic energy + Delta-G solvation = -29902.768615 eV Core-core repulsion = 25894.304313 eV Total energy + Delta-G solvation = -4008.464302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.11269 -41.59518 -40.13684 -37.58219 -36.27708 -35.06693 -33.29135 -33.04059 -32.76591 -30.88095 -29.62965 -28.75407 -27.33286 -26.96698 -25.27574 -24.10623 -23.08946 -22.42050 -21.45498 -20.53437 -20.13800 -18.98046 -18.61522 -18.12251 -17.53971 -16.99848 -16.65675 -16.51878 -16.16808 -15.81298 -15.61150 -15.50333 -15.22392 -15.03397 -14.72826 -14.56548 -14.34809 -14.11241 -13.93866 -13.68327 -13.62893 -13.54552 -13.27575 -13.17277 -13.11087 -12.84267 -12.64422 -12.50898 -12.34867 -12.13538 -11.87156 -11.82007 -11.49364 -11.16209 -10.95843 -10.79487 -10.50866 -10.45793 -9.83390 -9.23267 -8.74672 -7.90608 -5.37004 0.92528 1.37512 1.46748 1.48386 1.57101 1.60662 2.01768 2.21798 2.47371 2.73939 3.19991 3.26898 3.46579 3.56055 3.72572 3.77635 3.87389 3.90694 3.97942 4.07032 4.23625 4.24768 4.31494 4.37850 4.50089 4.52279 4.52474 4.63074 4.68584 4.71340 4.75983 4.84142 4.90394 5.01047 5.03531 5.03899 5.12092 5.16509 5.26514 5.40236 5.49722 5.61485 5.80703 6.18533 6.28003 6.34863 6.41766 6.91279 7.05469 7.10712 7.74787 8.29028 9.15471 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.016288 B = 0.003070 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.695004 B = 9117.225699 C =10180.746058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.019 4.019 3 C -0.058 4.058 4 N -0.531 5.531 5 C 0.183 3.817 6 N -0.446 5.446 7 C 0.097 3.903 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.139 4.139 13 C 0.095 3.905 14 C 0.133 3.867 15 C 0.174 3.826 16 N -0.608 5.608 17 C -0.255 4.255 18 H 0.077 0.923 19 C -0.051 4.051 20 N -0.939 5.939 21 Si 0.966 3.034 22 H -0.281 1.281 23 H -0.302 1.302 24 H -0.266 1.266 25 C 0.100 3.900 26 C 0.054 3.946 27 O -0.382 6.382 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.087 0.913 31 H 0.178 0.822 32 H 0.232 0.768 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.068 0.932 42 H -0.014 1.014 43 H 0.249 0.751 44 H 0.010 0.990 45 H 0.075 0.925 46 H 0.119 0.881 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 3.423 16.124 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.134 4.134 3 C -0.204 4.204 4 N -0.249 5.249 5 C -0.099 4.099 6 N -0.130 5.130 7 C -0.028 4.028 8 C 0.295 3.705 9 O -0.458 6.458 10 N -0.340 5.340 11 C -0.017 4.017 12 C -0.177 4.177 13 C 0.053 3.947 14 C 0.009 3.991 15 C 0.048 3.952 16 N -0.332 5.332 17 C -0.385 4.385 18 H 0.095 0.905 19 C -0.246 4.246 20 N -0.585 5.585 21 Si 0.795 3.205 22 H -0.207 1.207 23 H -0.229 1.229 24 H -0.191 1.191 25 C -0.025 4.025 26 C -0.023 4.023 27 O -0.301 6.301 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.195 0.805 32 H 0.248 0.752 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.004 0.996 43 H 0.058 0.942 44 H 0.028 0.972 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.251 4.412 15.549 19.139 hybrid contribution -2.075 -0.674 -0.997 2.399 sum 8.176 3.738 14.552 17.105 Atomic orbital electron populations 1.20282 0.85712 1.03469 1.03799 1.21645 0.95682 0.86784 1.09252 1.22333 0.88477 0.99446 1.10105 1.70202 1.23379 1.10278 1.21017 1.25474 0.88079 0.91708 1.04650 1.45056 1.07280 1.06169 1.54464 1.21920 1.07453 0.80499 0.92959 1.21099 0.76789 0.80121 0.92455 1.90785 1.53704 1.53093 1.48180 1.48598 1.65673 1.10938 1.08796 1.22765 1.00072 0.87594 0.91303 1.23135 0.99163 1.01359 0.94064 1.22274 0.87819 0.88059 0.96542 1.21488 1.00207 0.91719 0.85719 1.20913 0.94588 0.86062 0.93678 1.44336 1.03393 1.00905 1.84587 1.19531 0.82557 1.06027 1.30390 0.90519 1.25788 1.01526 0.99743 0.97518 1.70190 1.31398 1.24607 1.32317 0.85275 0.79638 0.78353 0.77248 1.20732 1.22946 1.19103 1.21825 0.89458 0.94318 0.96921 1.23191 0.98817 0.81695 0.98623 1.87679 1.34938 1.17312 1.90218 0.88504 0.92796 0.89409 0.80481 0.75218 0.81518 0.83192 0.88369 0.86516 0.91142 0.88234 0.92094 0.91758 0.91361 0.99636 0.94191 0.97233 0.90627 0.86322 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.08 71.23 0.72 -0.57 16 2 C -0.02 -0.44 6.95 40.95 0.28 -0.15 16 3 C -0.06 -1.47 11.79 83.52 0.98 -0.49 16 4 N -0.53 -14.91 11.25 -200.32 -2.25 -17.17 16 5 C 0.18 4.10 12.56 180.26 2.26 6.37 16 6 N -0.45 -9.31 2.24 -518.64 -1.16 -10.47 16 7 C 0.10 1.39 5.28 85.63 0.45 1.84 16 8 C 0.51 12.75 7.92 87.66 0.69 13.44 16 9 O -0.58 -21.02 16.76 -3.04 -0.05 -21.07 16 10 N -0.61 -15.12 3.33 -811.82 -2.70 -17.83 16 11 C 0.10 1.81 6.70 86.97 0.58 2.39 16 12 C -0.14 -3.72 5.93 31.89 0.19 -3.53 16 13 C 0.09 3.25 0.83 -10.21 -0.01 3.24 16 14 C 0.13 4.43 6.24 86.47 0.54 4.97 16 15 C 0.17 7.99 3.95 86.07 0.34 8.33 16 16 N -0.61 -28.23 2.95 -698.65 -2.06 -30.29 16 17 C -0.26 -12.91 9.66 84.03 0.81 -12.10 16 18 H 0.08 3.71 7.88 -2.91 -0.02 3.68 16 19 C -0.05 -2.66 4.96 84.86 0.42 -2.24 16 20 N -0.94 -53.75 11.12 21.65 0.24 -53.51 16 21 Si 0.97 42.24 29.59 68.60 2.03 44.27 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 25 C 0.10 3.76 6.71 86.35 0.58 4.34 16 26 C 0.05 1.54 6.76 72.08 0.49 2.03 16 27 O -0.38 -12.61 10.22 -148.97 -1.52 -14.14 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.05 1.04 7.96 -2.38 -0.02 1.02 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 33 H 0.17 0.99 8.13 -2.39 -0.02 0.97 16 34 H 0.15 1.28 7.73 -2.39 -0.02 1.26 16 35 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.12 1.11 7.48 -2.39 -0.02 1.09 16 37 H 0.07 2.16 7.86 -2.39 -0.02 2.14 16 38 H 0.10 2.50 5.98 -2.39 -0.01 2.48 16 39 H 0.06 2.32 7.79 -2.39 -0.02 2.30 16 40 H 0.06 2.28 8.06 -2.39 -0.02 2.26 16 41 H 0.07 3.52 5.96 -2.39 -0.01 3.50 16 42 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 43 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.08 2.62 7.96 -2.39 -0.02 2.60 16 46 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.07 1.72 6.14 -2.39 -0.01 1.70 16 Total: -1.00 -78.33 377.32 2.83 -75.50 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.97 Total: 16.85 kcal Atomic # 6 Polarization: 18.52 SS G_CDS: 9.34 Total: 27.86 kcal Atomic # 7 Polarization: -121.33 SS G_CDS: -7.94 Total: -129.26 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.57 Total: -35.21 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -78.33 2.83 -75.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972466345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.746 kcal (2) G-P(sol) polarization free energy of solvation -78.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds