Wall clock time and date at job start Tue Mar 31 2020 18:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34127 * 125.98953 * 2 1 4 4 C 1.30504 * 109.25882 * 180.24683 * 3 2 1 5 5 N 1.35044 * 108.69465 * 359.75704 * 4 3 2 6 6 H 0.97003 * 126.39829 * 179.97438 * 5 4 3 7 7 C 1.34672 * 125.99184 * 179.82326 * 2 1 3 8 8 C 1.50694 * 126.58928 * 0.03001 * 7 2 1 9 9 C 1.50701 * 109.47842 * 84.70614 * 8 7 2 10 10 O 1.21287 * 119.99082 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00440 * 180.02562 * 9 8 7 12 12 C 1.47481 * 125.66268 * 359.95472 * 11 9 8 13 13 C 1.55023 * 104.90592 * 204.04707 * 12 11 9 14 14 C 1.54491 * 101.53239 * 323.64387 * 13 12 11 15 15 C 1.47188 * 125.66110 * 180.02562 * 11 9 8 16 16 C 1.52521 * 110.09365 * 153.03394 * 14 13 12 17 17 N 1.47300 * 108.39817 * 173.02811 * 16 14 13 18 18 C 1.36937 * 121.05974 * 130.57620 * 17 16 14 19 19 H 1.07992 * 120.00135 * 205.76896 * 18 17 16 20 20 C 1.38821 * 119.99614 * 25.77405 * 18 17 16 21 21 N 1.31609 * 120.00222 * 16.75757 * 20 18 17 22 22 Si 1.86806 * 119.99648 * 196.76269 * 20 18 17 23 23 H 1.48500 * 109.46930 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46805 * 119.99776 * 22 20 18 25 25 H 1.48491 * 109.46922 * 239.99894 * 22 20 18 26 26 C 1.47164 * 117.88437 * 310.59656 * 17 16 14 27 27 C 1.53287 * 108.53095 * 51.12470 * 26 17 16 28 28 O 1.42066 * 110.38699 * 276.05715 * 14 13 12 29 29 H 1.08998 * 109.46948 * 270.17540 * 1 2 3 30 30 H 1.08997 * 109.47230 * 30.17240 * 1 2 3 31 31 H 1.08998 * 109.46618 * 150.17608 * 1 2 3 32 32 H 1.07999 * 125.65175 * 179.77750 * 4 3 2 33 33 H 1.09004 * 109.47450 * 324.70676 * 8 7 2 34 34 H 1.09000 * 109.47434 * 204.71156 * 8 7 2 35 35 H 1.08999 * 110.35671 * 322.90701 * 12 11 9 36 36 H 1.09004 * 110.35116 * 85.08288 * 12 11 9 37 37 H 1.08997 * 111.01444 * 205.58548 * 13 12 11 38 38 H 1.08993 * 111.01666 * 81.70667 * 13 12 11 39 39 H 1.08996 * 109.90890 * 59.08214 * 15 11 9 40 40 H 1.08998 * 109.90808 * 297.81748 * 15 11 9 41 41 H 1.08998 * 109.68018 * 292.76001 * 16 14 13 42 42 H 1.09002 * 109.67480 * 53.25920 * 16 14 13 43 43 H 0.97004 * 119.99987 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.62634 * 170.83629 * 26 17 16 45 45 H 1.09003 * 109.62838 * 291.21957 * 26 17 16 46 46 H 1.08993 * 109.50518 * 187.18890 * 27 26 17 47 47 H 1.09003 * 109.50958 * 67.04195 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7096 -0.0053 5 7 3.5913 -0.6401 -0.0035 6 1 4.3913 -1.1886 -0.0067 7 6 2.2984 -1.0896 0.0034 8 6 1.8473 -2.5275 0.0072 9 6 1.5724 -2.9716 -1.4064 10 8 1.7281 -2.1968 -2.3265 11 7 1.1537 -4.2296 -1.6482 12 6 0.9249 -5.2706 -0.6288 13 6 1.0721 -6.6131 -1.3898 14 6 0.4504 -6.2615 -2.7597 15 6 0.8503 -4.7932 -2.9737 16 6 1.0512 -7.1431 -3.8496 17 7 0.3179 -6.8973 -5.1032 18 6 0.9832 -6.6378 -6.2716 19 1 0.5007 -6.0696 -7.0530 20 6 2.2779 -7.1051 -6.4516 21 7 2.7487 -8.0557 -5.6725 22 14 3.3520 -6.3846 -7.7995 23 1 2.5933 -5.3382 -8.5307 24 1 4.5682 -5.7839 -7.1952 25 1 3.7480 -7.4595 -8.7444 26 6 -1.1525 -6.9390 -5.0600 27 6 -1.6324 -6.0315 -3.9217 28 8 -0.9628 -6.3989 -2.7117 29 1 -0.3633 0.0031 1.0277 30 1 -0.3633 0.8884 -0.5165 31 1 -0.3632 -0.8916 -0.5111 32 1 4.4004 1.3688 -0.0100 33 1 0.9380 -2.6214 0.6008 34 1 2.6291 -3.1524 0.4388 35 1 1.6725 -5.1985 0.1611 36 1 -0.0775 -5.1778 -0.2107 37 1 0.5089 -7.4056 -0.8969 38 1 2.1211 -6.8893 -1.4960 39 1 1.7324 -4.7377 -3.6114 40 1 0.0248 -4.2464 -3.4293 41 1 2.1036 -6.8937 -3.9849 42 1 0.9559 -8.1917 -3.5675 43 1 3.6533 -8.3825 -5.7986 44 1 -1.5569 -6.5828 -6.0075 45 1 -1.4847 -7.9618 -4.8816 46 1 -2.7083 -6.1482 -3.7922 47 1 -1.4045 -4.9933 -4.1631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972654469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:08 Heat of formation + Delta-G solvation = 12.782878 kcal Electronic energy + Delta-G solvation = -30048.444474 eV Core-core repulsion = 26040.263709 eV Total energy + Delta-G solvation = -4008.180765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.19780 -40.22391 -38.64478 -36.15045 -34.51410 -33.18280 -32.88808 -31.70839 -31.25177 -29.27505 -29.00387 -27.57428 -26.28692 -25.19397 -23.31388 -23.24405 -21.78819 -21.12492 -20.09868 -19.24672 -18.72418 -17.77864 -17.23064 -16.92883 -16.38488 -15.60409 -15.33767 -15.12361 -14.63992 -14.60036 -14.39608 -14.15821 -13.79433 -13.55300 -13.38720 -13.15471 -12.93665 -12.86227 -12.81917 -12.65763 -12.33708 -12.16259 -12.00877 -11.78762 -11.46637 -11.15685 -11.10743 -10.87432 -10.78891 -10.50569 -10.28522 -10.04843 -9.98104 -9.96371 -9.72081 -9.59550 -9.11472 -8.59626 -8.43551 -8.28306 -6.80682 -5.89703 -3.31602 1.87492 2.72114 2.92956 3.05132 3.25763 3.32230 3.40767 3.43342 4.15551 4.39714 4.42268 4.55976 4.67273 4.73845 4.81112 5.00123 5.15792 5.21850 5.25171 5.25914 5.30969 5.35447 5.49271 5.60811 5.67144 5.77564 5.80171 5.88542 5.95391 5.98533 6.03862 6.08808 6.13218 6.18894 6.25736 6.42892 6.51257 6.57321 6.69108 6.73459 6.99053 7.27657 7.35993 7.66559 7.68828 7.83980 7.99618 8.26994 8.28870 9.06185 9.69042 10.25389 11.18886 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003463 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.575395 B = 8084.559056 C = 9133.672353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.020 3.980 3 N -0.493 5.493 4 C 0.187 3.813 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.005 4.005 8 C -0.060 4.060 9 C 0.522 3.478 10 O -0.529 6.529 11 N -0.615 5.615 12 C 0.101 3.899 13 C -0.117 4.117 14 C 0.085 3.915 15 C 0.098 3.902 16 C 0.163 3.837 17 N -0.595 5.595 18 C -0.251 4.251 19 H 0.070 0.930 20 C 0.004 3.996 21 N -0.904 5.904 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.110 3.890 27 C 0.044 3.956 28 O -0.375 6.375 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.207 0.793 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.033 0.967 43 H 0.254 0.746 44 H 0.063 0.937 45 H 0.027 0.973 46 H 0.084 0.916 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.356 7.666 16.179 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 N -0.213 5.213 4 C -0.097 4.097 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.121 4.121 8 C -0.101 4.101 9 C 0.309 3.691 10 O -0.405 6.405 11 N -0.350 5.350 12 C -0.022 4.022 13 C -0.156 4.156 14 C 0.044 3.956 15 C -0.023 4.023 16 C 0.037 3.963 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.087 0.913 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.215 1.215 25 H -0.216 1.216 26 C -0.017 4.017 27 C -0.034 4.034 28 O -0.294 6.294 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.045 0.955 46 H 0.102 0.898 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.506 8.870 15.807 18.188 hybrid contribution 1.572 -0.776 -1.027 2.032 sum 0.066 8.094 14.780 16.851 Atomic orbital electron populations 1.20030 0.87872 1.02931 1.01717 1.20410 0.96353 0.87782 1.06360 1.70156 1.00578 1.30669 1.19873 1.24848 0.97337 0.81844 1.05625 1.43118 1.07955 1.08728 1.56758 0.74452 1.20190 0.84123 0.95409 1.12355 1.20005 1.03749 0.90642 0.95670 1.20082 0.77644 0.80529 0.90860 1.90761 1.51718 1.52038 1.46023 1.48643 1.66136 1.10792 1.09398 1.22398 1.01122 0.87508 0.91183 1.22699 1.01932 0.96427 0.94500 1.22685 0.82340 0.93596 0.97025 1.22508 1.01892 0.94257 0.83689 1.21242 0.97623 0.94801 0.82639 1.44127 0.99136 1.83284 1.05377 1.19239 0.96976 1.27384 0.94442 0.91251 1.24995 0.99330 0.96581 0.98579 1.70010 1.16745 1.27030 1.41125 0.86233 0.80634 0.78637 0.81413 1.20124 1.21493 1.21592 1.21589 0.86657 0.96849 0.96575 1.23107 0.95679 0.98462 0.86151 1.87658 1.18084 1.87913 1.35775 0.91535 0.91075 0.91546 0.77616 0.86754 0.88365 0.90988 0.90897 0.88969 0.89085 0.90006 0.91181 0.88554 0.94870 0.93574 0.91873 0.95460 0.89753 0.93434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.14 36.01 0.37 -0.43 16 2 C 0.02 0.28 7.09 -82.85 -0.59 -0.31 16 3 N -0.49 -7.07 11.25 -10.87 -0.12 -7.19 16 4 C 0.19 2.04 13.04 -90.37 -1.18 0.86 16 5 N -0.56 -5.79 6.15 -10.30 -0.06 -5.86 16 6 H 0.42 2.98 8.96 -40.82 -0.37 2.61 16 7 C -0.01 -0.06 5.73 -81.61 -0.47 -0.53 16 8 C -0.06 -0.63 4.82 -29.04 -0.14 -0.77 16 9 C 0.52 8.00 7.84 -10.99 -0.09 7.91 16 10 O -0.53 -10.61 16.36 5.55 0.09 -10.52 16 11 N -0.61 -9.30 3.33 -170.67 -0.57 -9.87 16 12 C 0.10 1.16 6.69 -2.44 -0.02 1.15 16 13 C -0.12 -1.62 6.21 -24.88 -0.15 -1.77 16 14 C 0.09 1.54 0.81 -89.73 -0.07 1.46 16 15 C 0.10 1.83 5.96 -3.31 -0.02 1.81 16 16 C 0.16 3.66 3.98 -3.85 -0.02 3.65 16 17 N -0.60 -14.38 2.97 -172.17 -0.51 -14.90 16 18 C -0.25 -6.71 9.66 -15.06 -0.15 -6.86 16 19 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 20 C 0.00 0.10 4.96 -17.43 -0.09 0.01 16 21 N -0.90 -25.26 11.12 55.49 0.62 -24.64 16 22 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.11 2.22 6.72 -3.53 -0.02 2.20 16 27 C 0.04 0.76 6.76 37.31 0.25 1.01 16 28 O -0.38 -6.76 10.26 -35.23 -0.36 -7.12 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.79 7.89 -51.93 -0.41 0.38 16 32 H 0.21 1.34 8.06 -52.49 -0.42 0.92 16 33 H 0.11 0.96 8.04 -51.93 -0.42 0.54 16 34 H 0.10 0.77 7.85 -51.93 -0.41 0.36 16 35 H 0.07 0.60 7.48 -51.93 -0.39 0.21 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.24 8.01 -51.93 -0.42 0.82 16 39 H 0.08 1.78 7.61 -51.93 -0.40 1.38 16 40 H 0.07 1.40 6.00 -51.93 -0.31 1.09 16 41 H 0.10 2.41 5.90 -51.93 -0.31 2.10 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.06 1.23 7.96 -51.93 -0.41 0.81 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.05 0.85 6.22 -51.93 -0.32 0.53 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -35.22 375.95 -9.75 -44.96 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.09 Total: 3.53 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.38 Total: 9.40 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.65 Total: -62.45 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.27 Total: -17.64 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.22 -9.75 -44.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972654469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.747 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds