Wall clock time and date at job start Tue Mar 31 2020 18:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34127 * 125.98953 * 2 1 4 4 C 1.30504 * 109.25882 * 180.24683 * 3 2 1 5 5 N 1.35044 * 108.69465 * 359.75704 * 4 3 2 6 6 H 0.97003 * 126.39829 * 179.97438 * 5 4 3 7 7 C 1.34672 * 125.99184 * 179.82326 * 2 1 3 8 8 C 1.50694 * 126.58928 * 0.03001 * 7 2 1 9 9 C 1.50701 * 109.47842 * 84.70614 * 8 7 2 10 10 O 1.21287 * 119.99082 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00440 * 180.02562 * 9 8 7 12 12 C 1.47481 * 125.66268 * 359.95472 * 11 9 8 13 13 C 1.55023 * 104.90592 * 204.04707 * 12 11 9 14 14 C 1.54491 * 101.53239 * 323.64387 * 13 12 11 15 15 C 1.47188 * 125.66110 * 180.02562 * 11 9 8 16 16 C 1.52521 * 110.09365 * 153.03394 * 14 13 12 17 17 N 1.47300 * 108.39817 * 173.02811 * 16 14 13 18 18 C 1.36937 * 121.05974 * 130.57620 * 17 16 14 19 19 H 1.07992 * 120.00135 * 205.76896 * 18 17 16 20 20 C 1.38821 * 119.99614 * 25.77405 * 18 17 16 21 21 N 1.31609 * 120.00222 * 16.75757 * 20 18 17 22 22 Si 1.86806 * 119.99648 * 196.76269 * 20 18 17 23 23 H 1.48500 * 109.46930 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46805 * 119.99776 * 22 20 18 25 25 H 1.48491 * 109.46922 * 239.99894 * 22 20 18 26 26 C 1.47164 * 117.88437 * 310.59656 * 17 16 14 27 27 C 1.53287 * 108.53095 * 51.12470 * 26 17 16 28 28 O 1.42066 * 110.38699 * 276.05715 * 14 13 12 29 29 H 1.08998 * 109.46948 * 270.17540 * 1 2 3 30 30 H 1.08997 * 109.47230 * 30.17240 * 1 2 3 31 31 H 1.08998 * 109.46618 * 150.17608 * 1 2 3 32 32 H 1.07999 * 125.65175 * 179.77750 * 4 3 2 33 33 H 1.09004 * 109.47450 * 324.70676 * 8 7 2 34 34 H 1.09000 * 109.47434 * 204.71156 * 8 7 2 35 35 H 1.08999 * 110.35671 * 322.90701 * 12 11 9 36 36 H 1.09004 * 110.35116 * 85.08288 * 12 11 9 37 37 H 1.08997 * 111.01444 * 205.58548 * 13 12 11 38 38 H 1.08993 * 111.01666 * 81.70667 * 13 12 11 39 39 H 1.08996 * 109.90890 * 59.08214 * 15 11 9 40 40 H 1.08998 * 109.90808 * 297.81748 * 15 11 9 41 41 H 1.08998 * 109.68018 * 292.76001 * 16 14 13 42 42 H 1.09002 * 109.67480 * 53.25920 * 16 14 13 43 43 H 0.97004 * 119.99987 * 179.97438 * 21 20 18 44 44 H 1.08995 * 109.62634 * 170.83629 * 26 17 16 45 45 H 1.09003 * 109.62838 * 291.21957 * 26 17 16 46 46 H 1.08993 * 109.50518 * 187.18890 * 27 26 17 47 47 H 1.09003 * 109.50958 * 67.04195 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7096 -0.0053 5 7 3.5913 -0.6401 -0.0035 6 1 4.3913 -1.1886 -0.0067 7 6 2.2984 -1.0896 0.0034 8 6 1.8473 -2.5275 0.0072 9 6 1.5724 -2.9716 -1.4064 10 8 1.7281 -2.1968 -2.3265 11 7 1.1537 -4.2296 -1.6482 12 6 0.9249 -5.2706 -0.6288 13 6 1.0721 -6.6131 -1.3898 14 6 0.4504 -6.2615 -2.7597 15 6 0.8503 -4.7932 -2.9737 16 6 1.0512 -7.1431 -3.8496 17 7 0.3179 -6.8973 -5.1032 18 6 0.9832 -6.6378 -6.2716 19 1 0.5007 -6.0696 -7.0530 20 6 2.2779 -7.1051 -6.4516 21 7 2.7487 -8.0557 -5.6725 22 14 3.3520 -6.3846 -7.7995 23 1 2.5933 -5.3382 -8.5307 24 1 4.5682 -5.7839 -7.1952 25 1 3.7480 -7.4595 -8.7444 26 6 -1.1525 -6.9390 -5.0600 27 6 -1.6324 -6.0315 -3.9217 28 8 -0.9628 -6.3989 -2.7117 29 1 -0.3633 0.0031 1.0277 30 1 -0.3633 0.8884 -0.5165 31 1 -0.3632 -0.8916 -0.5111 32 1 4.4004 1.3688 -0.0100 33 1 0.9380 -2.6214 0.6008 34 1 2.6291 -3.1524 0.4388 35 1 1.6725 -5.1985 0.1611 36 1 -0.0775 -5.1778 -0.2107 37 1 0.5089 -7.4056 -0.8969 38 1 2.1211 -6.8893 -1.4960 39 1 1.7324 -4.7377 -3.6114 40 1 0.0248 -4.2464 -3.4293 41 1 2.1036 -6.8937 -3.9849 42 1 0.9559 -8.1917 -3.5675 43 1 3.6533 -8.3825 -5.7986 44 1 -1.5569 -6.5828 -6.0075 45 1 -1.4847 -7.9618 -4.8816 46 1 -2.7083 -6.1482 -3.7922 47 1 -1.4045 -4.9933 -4.1631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972654469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:07 Heat of formation + Delta-G solvation = -11.719299 kcal Electronic energy + Delta-G solvation = -30049.506968 eV Core-core repulsion = 26040.263709 eV Total energy + Delta-G solvation = -4009.243259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.05538 -41.56319 -40.01095 -37.52236 -36.29349 -34.04485 -33.89385 -33.31431 -32.88741 -30.42895 -30.15086 -29.12470 -27.68112 -26.43596 -25.04328 -24.50242 -22.65817 -22.64040 -21.17293 -20.38312 -20.10838 -18.93527 -18.60231 -18.32939 -17.76026 -16.95128 -16.66991 -16.42284 -16.16186 -15.80342 -15.64500 -15.49785 -15.20390 -15.17469 -14.73837 -14.48853 -14.27177 -13.94551 -13.71608 -13.65119 -13.50291 -13.34586 -13.07665 -13.06340 -12.98783 -12.89150 -12.75745 -12.51007 -12.27221 -12.18126 -12.14754 -11.79124 -11.17043 -11.09176 -10.95437 -10.81483 -10.75723 -10.53709 -9.70105 -9.17124 -8.76154 -7.95607 -5.39583 0.98635 1.38018 1.41652 1.50520 1.57898 1.93919 2.19499 2.32931 2.41857 2.76758 3.18738 3.37066 3.53248 3.62283 3.71823 3.81268 3.97292 3.99722 4.08638 4.22705 4.28812 4.38194 4.39669 4.44714 4.49473 4.53428 4.58536 4.66869 4.76908 4.82851 4.84360 4.91905 4.99728 5.02519 5.06082 5.07340 5.17652 5.20735 5.23855 5.25379 5.49413 5.57440 5.81227 6.25088 6.34388 6.50749 6.59170 7.03832 7.11361 7.14073 7.71951 8.24611 9.10385 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.003463 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.575395 B = 8084.559056 C = 9133.672353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.011 4.011 3 N -0.538 5.538 4 C 0.192 3.808 5 N -0.556 5.556 6 H 0.433 0.567 7 C -0.016 4.016 8 C -0.046 4.046 9 C 0.518 3.482 10 O -0.587 6.587 11 N -0.614 5.614 12 C 0.104 3.896 13 C -0.114 4.114 14 C 0.092 3.908 15 C 0.110 3.890 16 C 0.173 3.827 17 N -0.616 5.616 18 C -0.261 4.261 19 H 0.065 0.935 20 C -0.042 4.042 21 N -0.929 5.929 22 Si 0.956 3.044 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.104 3.896 27 C 0.051 3.949 28 O -0.369 6.369 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.244 0.756 33 H 0.144 0.856 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.011 0.989 43 H 0.252 0.748 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.124 0.876 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 7.834 18.899 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.140 4.140 3 N -0.258 5.258 4 C -0.092 4.092 5 N -0.160 5.160 6 H 0.273 0.727 7 C -0.133 4.133 8 C -0.086 4.086 9 C 0.308 3.692 10 O -0.467 6.467 11 N -0.348 5.348 12 C -0.017 4.017 13 C -0.152 4.152 14 C 0.050 3.950 15 C -0.013 4.013 16 C 0.047 3.953 17 N -0.340 5.340 18 C -0.391 4.391 19 H 0.083 0.917 20 C -0.238 4.238 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.197 1.197 24 H -0.219 1.219 25 H -0.213 1.213 26 C -0.021 4.021 27 C -0.026 4.026 28 O -0.288 6.288 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.260 0.740 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.137 0.863 36 H 0.112 0.888 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.029 0.971 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.044 0.956 46 H 0.142 0.858 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.698 9.007 18.567 20.706 hybrid contribution 1.605 -0.817 -1.939 2.646 sum -0.094 8.190 16.628 18.536 Atomic orbital electron populations 1.20032 0.87315 1.02087 1.02846 1.20833 0.97326 0.88497 1.07351 1.70126 1.02160 1.31725 1.21830 1.25612 0.97523 0.82573 1.03521 1.43148 1.08088 1.08814 1.55950 0.72690 1.20434 0.84674 0.95960 1.12184 1.20075 1.06333 0.89978 0.92261 1.21009 0.76081 0.79689 0.92375 1.90739 1.54076 1.53607 1.48284 1.48720 1.65754 1.11680 1.08616 1.22680 1.03980 0.84385 0.90655 1.22772 1.01682 0.98715 0.92016 1.22464 0.82416 0.92168 0.97992 1.22054 0.99146 0.94789 0.85359 1.21026 0.96268 0.94422 0.83625 1.44397 1.00915 1.83392 1.05312 1.19481 0.97539 1.26857 0.95263 0.91716 1.25613 1.00342 0.97154 1.00704 1.70129 1.16746 1.28125 1.42517 0.85368 0.78885 0.77967 0.79281 1.19680 1.21877 1.21284 1.21772 0.84497 0.97522 0.98305 1.23116 0.97631 0.97047 0.84852 1.87672 1.17678 1.87747 1.35705 0.89357 0.92295 0.91951 0.73974 0.83782 0.84587 0.86308 0.88807 0.86906 0.89254 0.94396 0.93153 0.91817 0.97098 0.93897 0.91523 0.95623 0.85782 0.94212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.49 10.14 71.24 0.72 -0.76 16 2 C -0.01 -0.31 7.09 41.39 0.29 -0.01 16 3 N -0.54 -15.00 11.25 -188.31 -2.12 -17.12 16 4 C 0.19 3.84 13.04 180.26 2.35 6.19 16 5 N -0.56 -10.19 6.15 -186.50 -1.15 -11.34 16 6 H 0.43 4.99 8.96 -92.71 -0.83 4.16 16 7 C -0.02 -0.37 5.73 40.95 0.23 -0.13 16 8 C -0.05 -0.81 4.82 29.10 0.14 -0.67 16 9 C 0.52 15.06 7.84 87.66 0.69 15.75 16 10 O -0.59 -23.81 16.36 -3.05 -0.05 -23.86 16 11 N -0.61 -17.48 3.33 -812.27 -2.71 -20.19 16 12 C 0.10 1.96 6.69 86.88 0.58 2.54 16 13 C -0.11 -2.85 6.21 31.79 0.20 -2.66 16 14 C 0.09 3.26 0.81 -10.22 -0.01 3.25 16 15 C 0.11 4.17 5.96 86.48 0.52 4.69 16 16 C 0.17 8.00 3.98 86.07 0.34 8.35 16 17 N -0.62 -30.65 2.97 -698.63 -2.08 -32.73 16 18 C -0.26 -14.44 9.66 84.04 0.81 -13.62 16 19 H 0.07 3.54 7.88 -2.91 -0.02 3.52 16 20 C -0.04 -2.35 4.96 84.87 0.42 -1.93 16 21 N -0.93 -53.65 11.12 21.65 0.24 -53.41 16 22 Si 0.96 45.53 29.59 68.60 2.03 47.56 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 C 0.10 4.25 6.72 86.35 0.58 4.83 16 27 C 0.05 1.71 6.76 72.08 0.49 2.20 16 28 O -0.37 -12.66 10.26 -148.97 -1.53 -14.19 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.43 7.89 -2.39 -0.02 1.41 16 32 H 0.24 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.14 1.71 8.04 -2.38 -0.02 1.69 16 34 H 0.14 1.37 7.85 -2.39 -0.02 1.36 16 35 H 0.12 1.23 7.48 -2.39 -0.02 1.21 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.09 2.28 8.01 -2.39 -0.02 2.26 16 39 H 0.04 1.75 7.61 -2.39 -0.02 1.73 16 40 H 0.05 2.08 6.00 -2.39 -0.01 2.06 16 41 H 0.06 3.36 5.90 -2.39 -0.01 3.34 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 44 H 0.07 2.61 7.96 -2.39 -0.02 2.59 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.04 1.41 6.22 -2.39 -0.01 1.40 16 Total: -1.00 -82.27 375.95 1.16 -81.11 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.16 Total: 16.18 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 8.36 Total: 28.00 kcal Atomic # 7 Polarization: -126.99 SS G_CDS: -7.81 Total: -134.79 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -1.58 Total: -38.05 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -82.27 1.16 -81.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972654469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.387 kcal (2) G-P(sol) polarization free energy of solvation -82.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds