Wall clock time and date at job start Tue Mar 31 2020 18:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34124 * 125.98956 * 2 1 4 4 C 1.30499 * 109.25623 * 180.02562 * 3 2 1 5 5 N 1.35048 * 108.69816 * 359.97438 * 4 3 2 6 6 H 0.96997 * 126.39708 * 180.26374 * 5 4 3 7 7 C 1.34668 * 125.98413 * 180.02562 * 2 1 3 8 8 C 1.50700 * 126.59750 * 359.95843 * 7 2 1 9 9 C 1.50704 * 109.46669 * 85.01889 * 8 7 2 10 10 O 1.21276 * 120.00141 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99610 * 180.02562 * 9 8 7 12 12 C 1.47481 * 125.66689 * 359.68933 * 11 9 8 13 13 C 1.55257 * 104.78407 * 155.91594 * 12 11 9 14 14 C 1.54513 * 101.42665 * 36.67968 * 13 12 11 15 15 C 1.47189 * 125.66185 * 180.02562 * 11 9 8 16 16 C 1.52518 * 110.05998 * 206.74039 * 14 13 12 17 17 N 1.47305 * 108.40794 * 287.85452 * 16 14 13 18 18 C 1.36937 * 121.06352 * 130.60983 * 17 16 14 19 19 H 1.08009 * 119.99557 * 333.72607 * 18 17 16 20 20 C 1.38813 * 120.00373 * 153.72521 * 18 17 16 21 21 N 1.31619 * 120.00122 * 159.45812 * 20 18 17 22 22 Si 1.86794 * 119.99834 * 339.46049 * 20 18 17 23 23 H 1.48506 * 109.47091 * 91.99954 * 22 20 18 24 24 H 1.48500 * 109.47388 * 211.99791 * 22 20 18 25 25 H 1.48500 * 109.47327 * 332.00298 * 22 20 18 26 26 C 1.47161 * 117.87953 * 310.62778 * 17 16 14 27 27 C 1.53289 * 108.53753 * 51.13856 * 26 17 16 28 28 O 1.42064 * 110.33535 * 83.75136 * 14 13 12 29 29 H 1.09002 * 109.46795 * 270.00251 * 1 2 3 30 30 H 1.08998 * 109.47297 * 30.00157 * 1 2 3 31 31 H 1.08998 * 109.47569 * 150.00573 * 1 2 3 32 32 H 1.08002 * 125.65465 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47377 * 205.02054 * 8 7 2 34 34 H 1.08997 * 109.47019 * 325.02342 * 8 7 2 35 35 H 1.09001 * 110.35594 * 274.87235 * 12 11 9 36 36 H 1.09000 * 110.34909 * 37.15869 * 12 11 9 37 37 H 1.09003 * 111.21263 * 278.59043 * 13 12 11 38 38 H 1.08998 * 110.94398 * 154.65607 * 13 12 11 39 39 H 1.09002 * 109.90732 * 300.84726 * 15 11 9 40 40 H 1.09005 * 109.90692 * 62.10786 * 15 11 9 41 41 H 1.08998 * 109.67276 * 47.58037 * 16 14 13 42 42 H 1.08991 * 109.67662 * 168.12411 * 16 14 13 43 43 H 0.96991 * 120.00088 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.62186 * 291.42546 * 26 17 16 45 45 H 1.08997 * 109.78849 * 170.94501 * 26 17 16 46 46 H 1.09001 * 109.51083 * 187.16235 * 27 26 17 47 47 H 1.08998 * 109.50961 * 67.00804 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6402 -0.0004 6 1 4.3912 -1.1886 0.0029 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5783 -2.9698 -1.4156 10 8 1.7377 -2.1940 -2.3340 11 7 1.1606 -4.2276 -1.6607 12 6 0.9327 -5.2715 -0.6441 13 6 -0.0814 -6.2477 -1.2991 14 6 0.3882 -6.2348 -2.7711 15 6 0.8627 -4.7895 -2.9881 16 6 -0.7803 -6.5597 -3.6959 17 7 -1.1006 -7.9907 -3.5555 18 6 -2.3873 -8.4094 -3.3454 19 1 -3.0985 -7.7507 -2.8691 20 6 -2.7776 -9.6804 -3.7443 21 7 -3.8420 -10.2402 -3.2095 22 14 -1.7921 -10.5962 -5.0402 23 1 -0.7630 -11.4369 -4.3770 24 1 -2.7014 -11.4612 -5.8340 25 1 -1.1281 -9.6188 -5.9397 26 6 0.0064 -8.9559 -3.6480 27 6 1.1183 -8.5156 -2.6891 28 8 1.4578 -7.1513 -2.9561 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 4.4005 1.3686 -0.0003 33 1 2.6271 -3.1530 0.4339 34 1 0.9353 -2.6222 0.5894 35 1 1.8652 -5.7872 -0.4147 36 1 0.5080 -4.8343 0.2595 37 1 -1.1017 -5.8741 -1.2111 38 1 0.0056 -7.2457 -0.8698 39 1 0.0755 -4.2087 -3.4689 40 1 1.7618 -4.7824 -3.6044 41 1 -1.6469 -5.9606 -3.4166 42 1 -0.5023 -6.3453 -4.7277 43 1 -4.1144 -11.1284 -3.4880 44 1 0.3897 -8.9767 -4.6682 45 1 -0.3456 -9.9490 -3.3689 46 1 1.9962 -9.1447 -2.8362 47 1 0.7703 -8.6096 -1.6605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972654470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:12 Heat of formation + Delta-G solvation = 19.563037 kcal Electronic energy + Delta-G solvation = -29607.082144 eV Core-core repulsion = 25599.195389 eV Total energy + Delta-G solvation = -4007.886755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.30683 -40.47134 -38.95867 -36.39522 -34.71708 -33.28335 -33.05423 -31.92454 -31.43093 -29.84449 -29.23370 -27.81722 -26.47054 -25.43031 -23.60676 -22.98313 -21.96555 -21.63319 -20.09084 -19.44284 -19.13318 -17.87437 -17.40263 -17.04502 -16.52840 -15.73823 -15.63194 -15.53180 -14.95900 -14.83452 -14.52084 -14.22280 -14.15566 -13.79354 -13.56208 -13.31027 -13.06493 -12.94687 -12.88594 -12.60951 -12.54046 -12.44714 -12.24255 -12.14662 -11.95401 -11.62781 -11.27985 -11.15331 -10.84578 -10.46154 -10.34409 -10.15571 -10.10473 -9.90517 -9.79871 -9.60095 -9.47607 -8.71990 -8.64941 -8.39187 -7.11473 -6.06620 -3.43994 1.76001 2.51429 2.76359 2.94254 3.07283 3.21341 3.41043 3.43555 3.89752 4.29910 4.38113 4.42140 4.53062 4.59565 4.66351 4.69688 4.98948 5.03045 5.05951 5.14000 5.16789 5.24193 5.27738 5.43312 5.51027 5.61168 5.61382 5.71115 5.75933 5.79748 5.87101 5.88518 5.98498 5.98846 6.04408 6.14922 6.17352 6.27912 6.38074 6.39379 6.59183 6.60597 7.16726 7.40934 7.57360 7.75341 7.89808 8.05871 8.18399 8.75864 9.57346 9.92988 11.08818 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.002537 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.345272 B =11034.730383 C =11398.401486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 N -0.492 5.492 4 C 0.188 3.812 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.007 4.007 8 C -0.060 4.060 9 C 0.526 3.474 10 O -0.531 6.531 11 N -0.615 5.615 12 C 0.099 3.901 13 C -0.146 4.146 14 C 0.093 3.907 15 C 0.126 3.874 16 C 0.134 3.866 17 N -0.604 5.604 18 C -0.261 4.261 19 H 0.089 0.911 20 C 0.025 3.975 21 N -0.905 5.905 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.302 1.302 25 H -0.271 1.271 26 C 0.089 3.911 27 C 0.046 3.954 28 O -0.373 6.373 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.208 0.792 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.033 0.967 43 H 0.264 0.736 44 H 0.034 0.966 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.738 13.244 9.760 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 N -0.212 5.212 4 C -0.096 4.096 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.123 4.123 8 C -0.101 4.101 9 C 0.314 3.686 10 O -0.407 6.407 11 N -0.349 5.349 12 C -0.023 4.023 13 C -0.184 4.184 14 C 0.051 3.949 15 C 0.004 3.996 16 C 0.007 3.993 17 N -0.329 5.329 18 C -0.389 4.389 19 H 0.106 0.894 20 C -0.174 4.174 21 N -0.548 5.548 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.230 1.230 25 H -0.196 1.196 26 C -0.036 4.036 27 C -0.032 4.032 28 O -0.292 6.292 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.224 0.776 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.552 14.504 9.217 22.519 hybrid contribution 1.110 -2.030 -0.724 2.424 sum 15.662 12.475 8.492 21.750 Atomic orbital electron populations 1.20050 0.87755 1.02992 1.01900 1.20440 0.96411 0.87748 1.06112 1.70169 1.00574 1.30669 1.19800 1.24864 0.97361 0.81815 1.05549 1.43119 1.07913 1.08729 1.56875 0.74499 1.20164 0.84133 0.95340 1.12644 1.19993 1.03965 0.90724 0.95386 1.20096 0.77272 0.80223 0.91025 1.90748 1.51722 1.52017 1.46227 1.48572 1.66540 1.10851 1.08985 1.22508 0.99490 0.88924 0.91425 1.23256 0.99084 1.00308 0.95732 1.22299 0.89006 0.88192 0.95410 1.21760 1.01632 0.91530 0.84727 1.21372 0.94799 0.87051 0.96047 1.44368 1.03770 0.99798 1.84990 1.18869 0.86060 1.00262 1.33686 0.89368 1.25240 0.96209 0.97307 0.98657 1.69815 1.26990 1.15441 1.42505 0.86996 0.78715 0.79426 0.83615 1.21602 1.22989 1.19564 1.22013 0.89192 0.95220 0.97220 1.23162 0.98671 0.82022 0.99339 1.87700 1.35014 1.16624 1.89878 0.91405 0.91004 0.91482 0.77593 0.88289 0.86532 0.91127 0.90583 0.89295 0.88751 0.89742 0.90504 0.90625 0.94875 0.92610 0.94797 0.89968 0.89461 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.13 36.01 0.36 -0.37 16 2 C 0.02 0.28 7.09 -82.85 -0.59 -0.31 16 3 N -0.49 -6.41 11.25 -10.87 -0.12 -6.53 16 4 C 0.19 1.77 13.04 -90.37 -1.18 0.59 16 5 N -0.56 -4.87 6.15 -10.30 -0.06 -4.94 16 6 H 0.42 2.24 8.96 -40.82 -0.37 1.88 16 7 C -0.01 -0.08 5.73 -81.60 -0.47 -0.55 16 8 C -0.06 -0.53 4.82 -29.03 -0.14 -0.67 16 9 C 0.53 6.69 7.84 -10.98 -0.09 6.61 16 10 O -0.53 -8.94 16.36 5.56 0.09 -8.85 16 11 N -0.61 -7.62 3.33 -170.53 -0.57 -8.19 16 12 C 0.10 1.03 6.70 -2.31 -0.02 1.02 16 13 C -0.15 -1.96 5.93 -24.74 -0.15 -2.11 16 14 C 0.09 1.43 0.83 -89.73 -0.07 1.36 16 15 C 0.13 1.79 6.24 -3.32 -0.02 1.77 16 16 C 0.13 2.47 5.27 -3.85 -0.02 2.45 16 17 N -0.60 -13.38 2.73 -172.18 -0.47 -13.85 16 18 C -0.26 -6.82 10.10 -15.06 -0.15 -6.98 16 19 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 20 C 0.03 0.70 5.25 -17.43 -0.09 0.60 16 21 N -0.90 -26.55 13.97 55.49 0.78 -25.77 16 22 Si 0.88 21.49 24.31 -169.99 -4.13 17.36 16 23 H -0.29 -6.69 6.58 56.52 0.37 -6.31 16 24 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.27 -6.58 6.60 56.52 0.37 -6.21 16 26 C 0.09 1.82 4.37 -3.53 -0.02 1.81 16 27 C 0.05 0.75 6.76 37.31 0.25 1.00 16 28 O -0.37 -6.16 10.22 -35.23 -0.36 -6.52 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.70 7.89 -51.93 -0.41 0.29 16 32 H 0.21 1.05 8.06 -52.49 -0.42 0.62 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.12 0.82 7.75 -51.93 -0.40 0.42 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.59 7.48 -51.93 -0.39 0.20 16 37 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 38 H 0.09 1.35 5.98 -51.93 -0.31 1.04 16 39 H 0.08 1.20 7.79 -51.93 -0.40 0.79 16 40 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 41 H 0.08 1.36 7.75 -51.93 -0.40 0.96 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.03 0.71 6.95 -51.93 -0.36 0.35 16 45 H 0.08 1.81 4.60 -51.93 -0.24 1.57 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -35.16 369.22 -8.67 -43.83 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.00 Total: 1.68 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.38 Total: 6.23 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.45 Total: -59.29 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.27 Total: -15.38 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.13 Total: 17.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.16 -8.67 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972654470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.394 kcal (2) G-P(sol) polarization free energy of solvation -35.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds