Wall clock time and date at job start Tue Mar 31 2020 18:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34124 * 125.98956 * 2 1 4 4 C 1.30499 * 109.25623 * 180.02562 * 3 2 1 5 5 N 1.35048 * 108.69816 * 359.97438 * 4 3 2 6 6 H 0.96997 * 126.39708 * 180.26374 * 5 4 3 7 7 C 1.34668 * 125.98413 * 180.02562 * 2 1 3 8 8 C 1.50700 * 126.59750 * 359.95843 * 7 2 1 9 9 C 1.50704 * 109.46669 * 85.01889 * 8 7 2 10 10 O 1.21276 * 120.00141 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99610 * 180.02562 * 9 8 7 12 12 C 1.47481 * 125.66689 * 359.68933 * 11 9 8 13 13 C 1.55257 * 104.78407 * 155.91594 * 12 11 9 14 14 C 1.54513 * 101.42665 * 36.67968 * 13 12 11 15 15 C 1.47189 * 125.66185 * 180.02562 * 11 9 8 16 16 C 1.52518 * 110.05998 * 206.74039 * 14 13 12 17 17 N 1.47305 * 108.40794 * 287.85452 * 16 14 13 18 18 C 1.36937 * 121.06352 * 130.60983 * 17 16 14 19 19 H 1.08009 * 119.99557 * 333.72607 * 18 17 16 20 20 C 1.38813 * 120.00373 * 153.72521 * 18 17 16 21 21 N 1.31619 * 120.00122 * 159.45812 * 20 18 17 22 22 Si 1.86794 * 119.99834 * 339.46049 * 20 18 17 23 23 H 1.48506 * 109.47091 * 91.99954 * 22 20 18 24 24 H 1.48500 * 109.47388 * 211.99791 * 22 20 18 25 25 H 1.48500 * 109.47327 * 332.00298 * 22 20 18 26 26 C 1.47161 * 117.87953 * 310.62778 * 17 16 14 27 27 C 1.53289 * 108.53753 * 51.13856 * 26 17 16 28 28 O 1.42064 * 110.33535 * 83.75136 * 14 13 12 29 29 H 1.09002 * 109.46795 * 270.00251 * 1 2 3 30 30 H 1.08998 * 109.47297 * 30.00157 * 1 2 3 31 31 H 1.08998 * 109.47569 * 150.00573 * 1 2 3 32 32 H 1.08002 * 125.65465 * 180.02562 * 4 3 2 33 33 H 1.08994 * 109.47377 * 205.02054 * 8 7 2 34 34 H 1.08997 * 109.47019 * 325.02342 * 8 7 2 35 35 H 1.09001 * 110.35594 * 274.87235 * 12 11 9 36 36 H 1.09000 * 110.34909 * 37.15869 * 12 11 9 37 37 H 1.09003 * 111.21263 * 278.59043 * 13 12 11 38 38 H 1.08998 * 110.94398 * 154.65607 * 13 12 11 39 39 H 1.09002 * 109.90732 * 300.84726 * 15 11 9 40 40 H 1.09005 * 109.90692 * 62.10786 * 15 11 9 41 41 H 1.08998 * 109.67276 * 47.58037 * 16 14 13 42 42 H 1.08991 * 109.67662 * 168.12411 * 16 14 13 43 43 H 0.96991 * 120.00088 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.62186 * 291.42546 * 26 17 16 45 45 H 1.08997 * 109.78849 * 170.94501 * 26 17 16 46 46 H 1.09001 * 109.51083 * 187.16235 * 27 26 17 47 47 H 1.08998 * 109.50961 * 67.00804 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7095 -0.0006 5 7 3.5912 -0.6402 -0.0004 6 1 4.3912 -1.1886 0.0029 7 6 2.2983 -1.0897 -0.0005 8 6 1.8472 -2.5276 -0.0003 9 6 1.5783 -2.9698 -1.4156 10 8 1.7377 -2.1940 -2.3340 11 7 1.1606 -4.2276 -1.6607 12 6 0.9327 -5.2715 -0.6441 13 6 -0.0814 -6.2477 -1.2991 14 6 0.3882 -6.2348 -2.7711 15 6 0.8627 -4.7895 -2.9881 16 6 -0.7803 -6.5597 -3.6959 17 7 -1.1006 -7.9907 -3.5555 18 6 -2.3873 -8.4094 -3.3454 19 1 -3.0985 -7.7507 -2.8691 20 6 -2.7776 -9.6804 -3.7443 21 7 -3.8420 -10.2402 -3.2095 22 14 -1.7921 -10.5962 -5.0402 23 1 -0.7630 -11.4369 -4.3770 24 1 -2.7014 -11.4612 -5.8340 25 1 -1.1281 -9.6188 -5.9397 26 6 0.0064 -8.9559 -3.6480 27 6 1.1183 -8.5156 -2.6891 28 8 1.4578 -7.1513 -2.9561 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3634 -0.8900 -0.5137 32 1 4.4005 1.3686 -0.0003 33 1 2.6271 -3.1530 0.4339 34 1 0.9353 -2.6222 0.5894 35 1 1.8652 -5.7872 -0.4147 36 1 0.5080 -4.8343 0.2595 37 1 -1.1017 -5.8741 -1.2111 38 1 0.0056 -7.2457 -0.8698 39 1 0.0755 -4.2087 -3.4689 40 1 1.7618 -4.7824 -3.6044 41 1 -1.6469 -5.9606 -3.4166 42 1 -0.5023 -6.3453 -4.7277 43 1 -4.1144 -11.1284 -3.4880 44 1 0.3897 -8.9767 -4.6682 45 1 -0.3456 -9.9490 -3.3689 46 1 1.9962 -9.1447 -2.8362 47 1 0.7703 -8.6096 -1.6605 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972654470.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:11 Heat of formation + Delta-G solvation = -5.619645 kcal Electronic energy + Delta-G solvation = -29608.174147 eV Core-core repulsion = 25599.195389 eV Total energy + Delta-G solvation = -4008.978758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.04102 -41.63163 -40.13276 -37.63862 -36.33806 -34.02954 -33.94249 -33.64716 -32.83689 -30.94099 -30.12878 -29.23242 -27.73515 -26.47342 -25.06956 -24.12158 -23.33315 -22.59592 -20.96638 -20.66958 -20.11673 -18.94792 -18.60700 -18.35426 -17.68275 -17.40927 -16.68539 -16.50706 -16.12912 -15.91809 -15.73968 -15.57697 -15.46570 -15.34581 -14.53895 -14.37916 -14.18717 -14.03865 -13.82231 -13.72799 -13.69666 -13.63717 -13.51585 -13.29110 -13.06758 -13.00544 -12.64264 -12.37799 -12.35119 -12.16359 -11.98304 -11.55385 -11.32299 -11.09359 -11.01250 -10.92878 -10.75019 -10.47321 -9.72719 -9.15791 -8.96010 -8.18379 -5.51194 1.00374 1.26199 1.41359 1.48420 1.57881 1.90153 2.20433 2.33500 2.38298 2.63880 2.95670 3.18402 3.49423 3.56160 3.65927 3.82041 3.86936 3.98483 4.06804 4.11994 4.22116 4.32298 4.39402 4.42377 4.44932 4.47540 4.49784 4.58493 4.63763 4.69452 4.75308 4.84802 4.85640 4.88219 4.94193 5.01203 5.09105 5.12607 5.15299 5.24380 5.25690 5.78360 5.82546 6.09226 6.25675 6.46933 6.60825 6.81305 7.09757 7.16317 7.54406 7.95231 9.00770 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.002537 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.345272 B =11034.730383 C =11398.401486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.012 4.012 3 N -0.539 5.539 4 C 0.193 3.807 5 N -0.555 5.555 6 H 0.433 0.567 7 C -0.014 4.014 8 C -0.051 4.051 9 C 0.527 3.473 10 O -0.579 6.579 11 N -0.613 5.613 12 C 0.107 3.893 13 C -0.145 4.145 14 C 0.098 3.902 15 C 0.131 3.869 16 C 0.130 3.870 17 N -0.616 5.616 18 C -0.242 4.242 19 H 0.061 0.939 20 C -0.030 4.030 21 N -0.952 5.952 22 Si 0.940 3.060 23 H -0.267 1.267 24 H -0.313 1.313 25 H -0.271 1.271 26 C 0.081 3.919 27 C 0.055 3.945 28 O -0.374 6.374 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.244 0.756 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.030 0.970 45 H 0.067 0.933 46 H 0.120 0.880 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.694 13.325 11.321 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.141 4.141 3 N -0.260 5.260 4 C -0.091 4.091 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.130 4.130 8 C -0.091 4.091 9 C 0.316 3.684 10 O -0.458 6.458 11 N -0.347 5.347 12 C -0.014 4.014 13 C -0.183 4.183 14 C 0.056 3.944 15 C 0.008 3.992 16 C 0.004 3.996 17 N -0.342 5.342 18 C -0.372 4.372 19 H 0.079 0.921 20 C -0.225 4.225 21 N -0.598 5.598 22 Si 0.769 3.231 23 H -0.194 1.194 24 H -0.242 1.242 25 H -0.196 1.196 26 C -0.044 4.044 27 C -0.022 4.022 28 O -0.293 6.293 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.260 0.740 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.130 0.870 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.138 0.862 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.569 14.576 10.800 25.254 hybrid contribution 0.191 -1.940 -1.232 2.306 sum 17.760 12.636 9.567 23.803 Atomic orbital electron populations 1.20041 0.87471 1.02238 1.02718 1.20809 0.97234 0.88560 1.07459 1.70130 1.02246 1.31803 1.21818 1.25610 0.97461 0.82603 1.03470 1.43129 1.08032 1.08748 1.55983 0.72598 1.20387 0.84669 0.95829 1.12151 1.20075 1.06181 0.90011 0.92829 1.20766 0.76004 0.79449 0.92135 1.90735 1.53815 1.53222 1.48071 1.48609 1.66226 1.11318 1.08528 1.22623 0.99452 0.87791 0.91565 1.23197 0.99653 1.01052 0.94391 1.22141 0.87652 0.88622 0.95972 1.21541 1.00970 0.90712 0.86009 1.21511 0.96280 0.85000 0.96814 1.44450 1.02937 1.01629 1.85150 1.18804 0.87408 0.99361 1.31582 0.92136 1.25790 0.97525 0.98597 1.00598 1.69931 1.29361 1.16054 1.44418 0.86049 0.77622 0.78340 0.81045 1.19380 1.24242 1.19618 1.22108 0.89794 0.94271 0.98213 1.23129 0.98365 0.82308 0.98436 1.87714 1.34957 1.16644 1.89946 0.89774 0.92275 0.91660 0.73965 0.84815 0.84221 0.89396 0.86976 0.90184 0.89265 0.90385 0.91397 0.90917 0.95311 0.92879 0.95160 0.91511 0.86236 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 10.13 71.24 0.72 -0.67 16 2 C -0.01 -0.29 7.09 41.39 0.29 0.00 16 3 N -0.54 -13.61 11.25 -188.31 -2.12 -15.73 16 4 C 0.19 3.25 13.04 180.26 2.35 5.60 16 5 N -0.55 -8.14 6.15 -186.49 -1.15 -9.29 16 6 H 0.43 3.25 8.96 -92.71 -0.83 2.42 16 7 C -0.01 -0.27 5.73 40.95 0.23 -0.04 16 8 C -0.05 -0.71 4.82 29.10 0.14 -0.57 16 9 C 0.53 12.10 7.84 87.66 0.69 12.78 16 10 O -0.58 -18.96 16.36 -3.02 -0.05 -19.01 16 11 N -0.61 -13.52 3.33 -811.83 -2.70 -16.22 16 12 C 0.11 1.79 6.70 86.97 0.58 2.37 16 13 C -0.14 -3.56 5.93 31.88 0.19 -3.37 16 14 C 0.10 2.86 0.83 -10.22 -0.01 2.85 16 15 C 0.13 3.55 6.24 86.47 0.54 4.09 16 16 C 0.13 4.75 5.27 86.07 0.45 5.20 16 17 N -0.62 -27.09 2.73 -698.64 -1.90 -29.00 16 18 C -0.24 -12.89 10.10 84.03 0.85 -12.04 16 19 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 20 C -0.03 -1.66 5.25 84.86 0.45 -1.22 16 21 N -0.95 -57.28 13.97 21.65 0.30 -56.97 16 22 Si 0.94 44.79 24.31 68.60 1.67 46.46 16 23 H -0.27 -11.71 6.58 99.48 0.65 -11.06 16 24 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 25 H -0.27 -12.76 6.60 99.48 0.66 -12.10 16 26 C 0.08 3.18 4.37 86.35 0.38 3.56 16 27 C 0.05 1.64 6.76 72.08 0.49 2.13 16 28 O -0.37 -11.32 10.22 -148.97 -1.52 -12.84 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 1.33 7.89 -2.39 -0.02 1.31 16 32 H 0.24 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.13 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.14 1.35 7.75 -2.39 -0.02 1.33 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 1.14 7.48 -2.39 -0.02 1.12 16 37 H 0.08 2.11 7.86 -2.39 -0.02 2.09 16 38 H 0.09 2.32 5.98 -2.39 -0.01 2.30 16 39 H 0.08 2.20 7.79 -2.39 -0.02 2.18 16 40 H 0.07 1.97 8.06 -2.38 -0.02 1.95 16 41 H 0.07 2.66 7.75 -2.39 -0.02 2.64 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.03 1.22 6.95 -2.39 -0.02 1.20 16 45 H 0.07 2.83 4.60 -2.39 -0.01 2.82 16 46 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 47 H 0.07 1.86 6.14 -2.39 -0.01 1.85 16 Total: -1.00 -79.19 369.22 0.93 -78.26 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.07 Total: 13.65 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 8.35 Total: 20.68 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -7.57 Total: -127.21 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.57 Total: -31.85 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -79.19 0.93 -78.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972654470.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.638 kcal (2) G-P(sol) polarization free energy of solvation -79.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds