Wall clock time and date at job start Tue Mar 31 2020 17:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32164 * 119.14083 * 2 1 4 4 C 1.32375 * 120.60204 * 180.30675 * 3 2 1 5 5 C 1.47499 * 120.50874 * 179.69582 * 4 3 2 6 6 O 1.21592 * 119.99905 * 179.72378 * 5 4 3 7 7 N 1.34779 * 119.99843 * 359.72482 * 5 4 3 8 8 C 1.46502 * 119.99434 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.64376 * 325.70163 * 8 7 5 10 10 C 1.54322 * 110.71872 * 88.84348 * 8 7 5 11 11 N 1.47022 * 107.27269 * 96.34682 * 10 8 7 12 12 C 1.36934 * 125.65186 * 178.90274 * 11 10 8 13 13 H 1.08001 * 120.00082 * 180.02562 * 12 11 10 14 14 C 1.38809 * 119.99885 * 0.02640 * 12 11 10 15 15 N 1.31622 * 120.00122 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00256 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47080 * 59.99432 * 16 14 12 18 18 H 1.48500 * 109.47387 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47098 * 300.00151 * 16 14 12 20 20 C 1.47435 * 108.70089 * 358.93984 * 11 10 8 21 21 C 1.54904 * 104.83391 * 24.12919 * 20 11 10 22 22 C 1.52995 * 111.00688 * 204.91696 * 21 20 11 23 23 C 1.53001 * 111.00503 * 81.06336 * 21 20 11 24 24 C 1.46671 * 118.97672 * 359.42463 * 4 3 2 25 25 O 1.21857 * 120.78092 * 180.29606 * 24 4 3 26 26 N 1.35152 * 118.43437 * 0.27405 * 24 4 3 27 27 H 0.97003 * 120.36756 * 179.97438 * 26 24 4 28 28 C 1.34890 * 119.26592 * 0.02562 * 26 24 4 29 29 C 1.50704 * 119.50172 * 180.02562 * 28 26 24 30 30 H 1.08994 * 109.47230 * 270.30329 * 1 2 3 31 31 H 1.08999 * 109.46712 * 30.29868 * 1 2 3 32 32 H 1.08996 * 109.47306 * 150.29546 * 1 2 3 33 33 H 0.96999 * 120.00054 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.88417 * 215.75899 * 10 8 7 35 35 H 1.08995 * 109.88594 * 336.92652 * 10 8 7 36 36 H 0.96995 * 120.00311 * 179.97438 * 15 14 12 37 37 H 1.08997 * 110.36223 * 142.97138 * 20 11 10 38 38 H 1.09002 * 110.36419 * 265.17961 * 20 11 10 39 39 H 1.08994 * 109.47353 * 172.19002 * 22 21 20 40 40 H 1.08998 * 109.46929 * 292.20034 * 22 21 20 41 41 H 1.09005 * 109.46974 * 52.19916 * 22 21 20 42 42 H 1.09006 * 109.47230 * 307.80795 * 23 21 20 43 43 H 1.08999 * 109.46701 * 67.80264 * 23 21 20 44 44 H 1.09001 * 109.47069 * 187.80426 * 23 21 20 45 45 H 1.08999 * 109.47044 * 359.97438 * 29 28 26 46 46 H 1.08998 * 109.47467 * 119.99725 * 29 28 26 47 47 H 1.08999 * 109.46959 * 239.99871 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4740 1.1881 -0.0061 5 6 4.1901 2.4776 -0.0128 6 8 5.4059 2.4978 -0.0133 7 7 3.4968 3.6334 -0.0184 8 6 4.2082 4.9141 -0.0245 9 1 5.1314 4.8436 0.5506 10 6 4.4989 5.3703 -1.4699 11 7 3.4311 6.3043 -1.8559 12 6 3.3336 6.9522 -3.0583 13 1 2.5071 7.6218 -3.2454 14 6 4.2970 6.7484 -4.0366 15 7 5.3044 5.9327 -3.8084 16 14 4.1637 7.6317 -5.6772 17 1 4.1856 9.0994 -5.4523 18 1 5.3084 7.2466 -6.5412 19 1 2.8913 7.2518 -6.3420 20 6 2.4830 6.4284 -0.7336 21 6 3.3052 6.0506 0.5237 22 6 2.3945 5.5369 1.6406 23 6 4.1458 7.2347 1.0055 24 6 4.2171 -0.0764 0.0000 25 8 5.4356 -0.0837 0.0001 26 7 3.5184 -1.2333 0.0060 27 1 3.9814 -2.0857 0.0098 28 6 2.1702 -1.1896 0.0057 29 6 1.3859 -2.4764 0.0129 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3634 -0.8926 -0.5092 33 1 2.5270 3.6172 -0.0184 34 1 5.4648 5.8735 -1.5126 35 1 4.4974 4.5090 -2.1379 36 1 5.9774 5.7900 -4.4921 37 1 2.1197 7.4531 -0.6556 38 1 1.6483 5.7396 -0.8642 39 1 3.0039 5.1500 2.4573 40 1 1.7725 6.3537 2.0067 41 1 1.7583 4.7410 1.2535 42 1 4.7334 7.6252 0.1745 43 1 3.4880 8.0168 1.3846 44 1 4.8149 6.9056 1.8006 45 1 2.0744 -3.3215 0.0173 46 1 0.7580 -2.5143 0.9031 47 1 0.7581 -2.5243 -0.8768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974727125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:39 Heat of formation + Delta-G solvation = -2.095586 kcal Electronic energy + Delta-G solvation = -29950.751351 eV Core-core repulsion = 25941.925408 eV Total energy + Delta-G solvation = -4008.825943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86102 -39.51576 -38.11530 -37.61760 -35.54837 -33.75521 -33.35317 -32.71298 -30.60009 -29.57286 -28.07407 -27.04063 -26.42405 -25.52102 -24.83381 -23.77745 -22.72727 -20.74990 -19.88679 -18.89916 -18.78747 -18.19212 -16.77742 -16.56463 -16.36756 -15.99334 -15.44240 -14.69342 -14.44968 -14.26776 -14.12999 -13.96689 -13.77025 -13.69851 -13.50983 -13.36651 -13.19753 -13.10429 -12.41345 -12.30676 -12.05769 -11.92364 -11.86915 -11.57223 -11.46408 -11.32845 -11.26168 -10.95964 -10.89417 -10.69074 -10.30469 -10.17209 -9.97937 -9.88179 -9.77958 -9.54184 -9.26195 -8.53499 -8.35590 -8.08686 -6.72126 -5.58790 -2.93698 0.01865 1.53566 2.23611 2.83632 3.43123 3.46963 3.50777 3.53156 3.74095 3.82659 4.05117 4.14830 4.39377 4.58480 4.77744 4.95621 5.00393 5.06901 5.16478 5.30306 5.36875 5.39136 5.42695 5.63460 5.65137 5.74963 5.85420 5.92387 6.03393 6.12340 6.14433 6.19586 6.26356 6.31824 6.36889 6.50047 6.68914 6.72910 6.78000 6.87628 7.07368 7.35349 7.63928 7.66367 7.77128 7.94045 8.09963 8.36350 8.73240 9.31914 9.92899 10.59051 11.51584 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.003546 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.661836 B = 7893.918816 C = 8461.055341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.029 4.029 3 N -0.354 5.354 4 C 0.022 3.978 5 C 0.576 3.424 6 O -0.507 6.507 7 N -0.689 5.689 8 C 0.124 3.876 9 H 0.089 0.911 10 C 0.175 3.825 11 N -0.602 5.602 12 C -0.230 4.230 13 H 0.076 0.924 14 C -0.007 4.007 15 N -0.918 5.918 16 Si 0.910 3.090 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.287 1.287 20 C 0.144 3.856 21 C -0.089 4.089 22 C -0.131 4.131 23 C -0.125 4.125 24 C 0.495 3.505 25 O -0.480 6.480 26 N -0.588 5.588 27 H 0.419 0.581 28 C 0.146 3.854 29 C -0.125 4.125 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.403 0.597 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.253 0.747 37 H 0.040 0.960 38 H 0.016 0.984 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.048 0.952 45 H 0.077 0.923 46 H 0.099 0.901 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.658 -16.461 12.565 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.155 4.155 3 N -0.071 5.071 4 C -0.147 4.147 5 C 0.358 3.642 6 O -0.380 6.380 7 N -0.341 5.341 8 C 0.019 3.981 9 H 0.107 0.893 10 C 0.050 3.950 11 N -0.329 5.329 12 C -0.358 4.358 13 H 0.094 0.906 14 C -0.204 4.204 15 N -0.565 5.565 16 Si 0.740 3.260 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.213 1.213 20 C 0.018 3.982 21 C -0.090 4.090 22 C -0.189 4.189 23 C -0.183 4.183 24 C 0.286 3.714 25 O -0.351 6.351 26 N -0.224 5.224 27 H 0.259 0.741 28 C 0.030 3.970 29 C -0.183 4.183 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.092 0.908 33 H 0.240 0.760 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.034 0.966 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.117 0.883 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.396 -15.624 12.348 22.945 hybrid contribution 0.076 -0.869 -1.065 1.377 sum -11.320 -16.493 11.283 22.966 Atomic orbital electron populations 1.20527 0.87012 1.03805 1.02916 1.20117 0.97871 0.85633 1.11863 1.67543 1.08504 1.29464 1.01636 1.24118 0.88752 0.94191 1.07633 1.16973 0.86623 0.82076 0.78480 1.90892 1.12261 1.86339 1.48534 1.45763 1.10549 1.04759 1.73062 1.22532 0.94532 0.80608 1.00405 0.89258 1.21530 0.92088 0.93472 0.87918 1.44426 1.24925 1.51386 1.12141 1.18968 1.07376 1.20044 0.89408 0.90566 1.24805 0.97352 0.99777 0.98418 1.69958 1.13702 1.39159 1.33641 0.86239 0.76828 0.79096 0.83788 1.21243 1.21701 1.21337 1.21630 0.92037 0.98042 0.86513 1.22004 0.96308 0.95207 0.95501 1.21678 0.98981 1.00499 0.97748 1.21598 0.99264 0.96396 1.01046 1.19126 0.88487 0.83967 0.79789 1.91068 1.11391 1.85200 1.47409 1.43765 1.06318 1.11924 1.60356 0.74062 1.21493 0.83560 0.98880 0.93041 1.21178 1.00434 0.91455 1.05222 0.90818 0.90017 0.90846 0.76010 0.92720 0.93374 0.93675 0.94160 0.96593 0.92921 0.92709 0.92798 0.91175 0.92908 0.93330 0.90450 0.88263 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 9.65 36.01 0.35 -0.18 16 2 C -0.03 -0.28 6.70 -83.18 -0.56 -0.84 16 3 N -0.35 -4.89 9.57 -4.84 -0.05 -4.94 16 4 C 0.02 0.38 6.96 -80.46 -0.56 -0.18 16 5 C 0.58 11.74 7.80 -12.49 -0.10 11.64 16 6 O -0.51 -12.36 15.19 -15.19 -0.23 -12.59 16 7 N -0.69 -13.04 4.51 -53.07 -0.24 -13.28 16 8 C 0.12 2.54 2.54 -66.09 -0.17 2.37 16 9 H 0.09 1.89 7.52 -51.93 -0.39 1.50 16 10 C 0.18 4.52 4.80 -3.06 -0.01 4.51 16 11 N -0.60 -15.53 3.38 -170.07 -0.57 -16.10 16 12 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 13 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 14 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 15 N -0.92 -28.21 10.31 55.49 0.57 -27.64 16 16 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 C 0.14 2.96 6.14 -2.53 -0.02 2.94 16 21 C -0.09 -1.55 0.83 -152.36 -0.13 -1.68 16 22 C -0.13 -1.82 8.22 37.15 0.31 -1.52 16 23 C -0.13 -2.09 8.57 37.16 0.32 -1.77 16 24 C 0.49 7.87 7.93 -12.69 -0.10 7.77 16 25 O -0.48 -9.63 16.40 -15.43 -0.25 -9.88 16 26 N -0.59 -5.77 5.29 -9.45 -0.05 -5.82 16 27 H 0.42 2.79 8.64 -40.82 -0.35 2.44 16 28 C 0.15 1.11 6.78 -81.98 -0.56 0.55 16 29 C -0.13 -0.31 8.83 36.01 0.32 0.00 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.26 6.43 -51.93 -0.33 -0.08 16 33 H 0.40 6.91 6.39 -40.82 -0.26 6.65 16 34 H 0.05 1.58 7.38 -51.93 -0.38 1.19 16 35 H 0.05 1.43 7.41 -51.93 -0.38 1.05 16 36 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 37 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 38 H 0.02 0.33 7.99 -51.93 -0.41 -0.09 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.72 6.44 -51.93 -0.33 0.38 16 42 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.09 7.90 -51.93 -0.41 -0.32 16 46 H 0.10 0.11 8.09 -51.93 -0.42 -0.31 16 47 H 0.10 0.15 7.37 -51.93 -0.38 -0.23 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -38.32 379.55 -8.26 -46.58 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.98 Total: 3.57 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: -1.16 Total: 16.68 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.34 Total: -67.79 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.48 Total: -22.47 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.32 -8.26 -46.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974727125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.483 kcal (2) G-P(sol) polarization free energy of solvation -38.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds