Wall clock time and date at job start Tue Mar 31 2020 17:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32164 * 119.14083 * 2 1 4 4 C 1.32375 * 120.60204 * 180.30675 * 3 2 1 5 5 C 1.47499 * 120.50874 * 179.69582 * 4 3 2 6 6 O 1.21592 * 119.99905 * 179.72378 * 5 4 3 7 7 N 1.34779 * 119.99843 * 359.72482 * 5 4 3 8 8 C 1.46502 * 119.99434 * 179.97438 * 7 5 4 9 9 H 1.09002 * 110.64376 * 325.70163 * 8 7 5 10 10 C 1.54322 * 110.71872 * 88.84348 * 8 7 5 11 11 N 1.47022 * 107.27269 * 96.34682 * 10 8 7 12 12 C 1.36934 * 125.65186 * 178.90274 * 11 10 8 13 13 H 1.08001 * 120.00082 * 180.02562 * 12 11 10 14 14 C 1.38809 * 119.99885 * 0.02640 * 12 11 10 15 15 N 1.31622 * 120.00122 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00256 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47080 * 59.99432 * 16 14 12 18 18 H 1.48500 * 109.47387 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47098 * 300.00151 * 16 14 12 20 20 C 1.47435 * 108.70089 * 358.93984 * 11 10 8 21 21 C 1.54904 * 104.83391 * 24.12919 * 20 11 10 22 22 C 1.52995 * 111.00688 * 204.91696 * 21 20 11 23 23 C 1.53001 * 111.00503 * 81.06336 * 21 20 11 24 24 C 1.46671 * 118.97672 * 359.42463 * 4 3 2 25 25 O 1.21857 * 120.78092 * 180.29606 * 24 4 3 26 26 N 1.35152 * 118.43437 * 0.27405 * 24 4 3 27 27 H 0.97003 * 120.36756 * 179.97438 * 26 24 4 28 28 C 1.34890 * 119.26592 * 0.02562 * 26 24 4 29 29 C 1.50704 * 119.50172 * 180.02562 * 28 26 24 30 30 H 1.08994 * 109.47230 * 270.30329 * 1 2 3 31 31 H 1.08999 * 109.46712 * 30.29868 * 1 2 3 32 32 H 1.08996 * 109.47306 * 150.29546 * 1 2 3 33 33 H 0.96999 * 120.00054 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.88417 * 215.75899 * 10 8 7 35 35 H 1.08995 * 109.88594 * 336.92652 * 10 8 7 36 36 H 0.96995 * 120.00311 * 179.97438 * 15 14 12 37 37 H 1.08997 * 110.36223 * 142.97138 * 20 11 10 38 38 H 1.09002 * 110.36419 * 265.17961 * 20 11 10 39 39 H 1.08994 * 109.47353 * 172.19002 * 22 21 20 40 40 H 1.08998 * 109.46929 * 292.20034 * 22 21 20 41 41 H 1.09005 * 109.46974 * 52.19916 * 22 21 20 42 42 H 1.09006 * 109.47230 * 307.80795 * 23 21 20 43 43 H 1.08999 * 109.46701 * 67.80264 * 23 21 20 44 44 H 1.09001 * 109.47069 * 187.80426 * 23 21 20 45 45 H 1.08999 * 109.47044 * 359.97438 * 29 28 26 46 46 H 1.08998 * 109.47467 * 119.99725 * 29 28 26 47 47 H 1.08999 * 109.46959 * 239.99871 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1507 1.1544 0.0000 4 6 3.4740 1.1881 -0.0061 5 6 4.1901 2.4776 -0.0128 6 8 5.4059 2.4978 -0.0133 7 7 3.4968 3.6334 -0.0184 8 6 4.2082 4.9141 -0.0245 9 1 5.1314 4.8436 0.5506 10 6 4.4989 5.3703 -1.4699 11 7 3.4311 6.3043 -1.8559 12 6 3.3336 6.9522 -3.0583 13 1 2.5071 7.6218 -3.2454 14 6 4.2970 6.7484 -4.0366 15 7 5.3044 5.9327 -3.8084 16 14 4.1637 7.6317 -5.6772 17 1 4.1856 9.0994 -5.4523 18 1 5.3084 7.2466 -6.5412 19 1 2.8913 7.2518 -6.3420 20 6 2.4830 6.4284 -0.7336 21 6 3.3052 6.0506 0.5237 22 6 2.3945 5.5369 1.6406 23 6 4.1458 7.2347 1.0055 24 6 4.2171 -0.0764 0.0000 25 8 5.4356 -0.0837 0.0001 26 7 3.5184 -1.2333 0.0060 27 1 3.9814 -2.0857 0.0098 28 6 2.1702 -1.1896 0.0057 29 6 1.3859 -2.4764 0.0129 30 1 -0.3633 0.0054 1.0276 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3634 -0.8926 -0.5092 33 1 2.5270 3.6172 -0.0184 34 1 5.4648 5.8735 -1.5126 35 1 4.4974 4.5090 -2.1379 36 1 5.9774 5.7900 -4.4921 37 1 2.1197 7.4531 -0.6556 38 1 1.6483 5.7396 -0.8642 39 1 3.0039 5.1500 2.4573 40 1 1.7725 6.3537 2.0067 41 1 1.7583 4.7410 1.2535 42 1 4.7334 7.6252 0.1745 43 1 3.4880 8.0168 1.3846 44 1 4.8149 6.9056 1.8006 45 1 2.0744 -3.3215 0.0173 46 1 0.7580 -2.5143 0.9031 47 1 0.7581 -2.5243 -0.8768 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974727125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:38 Heat of formation + Delta-G solvation = -32.328671 kcal Electronic energy + Delta-G solvation = -29952.062356 eV Core-core repulsion = 25941.925408 eV Total energy + Delta-G solvation = -4010.136948 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.88317 -41.10708 -39.44609 -39.03068 -36.59179 -35.66988 -34.53467 -33.95041 -32.60331 -30.41554 -29.55654 -28.18775 -27.71136 -27.33262 -25.60063 -25.36967 -24.07144 -22.33508 -21.58006 -20.35558 -19.85354 -19.35774 -18.66614 -17.98826 -17.38708 -17.30859 -16.90998 -16.66047 -15.80496 -15.71630 -15.44307 -15.24198 -15.05057 -14.93171 -14.76551 -14.09684 -14.03741 -13.87187 -13.77761 -13.75670 -13.43807 -13.13968 -12.95222 -12.84622 -12.77458 -12.70399 -12.63543 -12.57827 -12.40466 -12.34544 -12.16917 -11.84573 -11.74571 -11.52102 -11.35971 -11.31051 -10.74133 -10.52299 -10.02104 -9.07600 -8.88551 -7.81290 -5.19150 -0.96307 0.50674 1.24478 1.43197 1.48064 1.54558 1.56836 2.16595 2.50357 2.56941 2.94146 3.01806 3.36311 3.41608 3.50179 3.72315 3.75500 3.94367 3.97953 4.08785 4.40668 4.52251 4.54028 4.65526 4.67373 4.74420 4.86934 4.89568 4.91403 4.96661 4.97720 5.05814 5.08628 5.14690 5.18234 5.21160 5.27414 5.31632 5.35697 5.46582 5.52389 5.57847 5.71379 5.74637 6.17934 6.34768 6.55204 6.66837 7.08025 7.24751 7.78749 8.44310 9.27855 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.003546 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.661836 B = 7893.918816 C = 8461.055341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.050 4.050 3 N -0.341 5.341 4 C -0.063 4.063 5 C 0.572 3.428 6 O -0.568 6.568 7 N -0.681 5.681 8 C 0.135 3.865 9 H 0.075 0.925 10 C 0.196 3.804 11 N -0.619 5.619 12 C -0.238 4.238 13 H 0.091 0.909 14 C -0.073 4.073 15 N -0.956 5.956 16 Si 0.981 3.019 17 H -0.272 1.272 18 H -0.301 1.301 19 H -0.274 1.274 20 C 0.140 3.860 21 C -0.073 4.073 22 C -0.122 4.122 23 C -0.122 4.122 24 C 0.489 3.511 25 O -0.542 6.542 26 N -0.563 5.563 27 H 0.438 0.562 28 C 0.200 3.800 29 C -0.129 4.129 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.413 0.587 34 H 0.007 0.993 35 H -0.006 1.006 36 H 0.242 0.758 37 H 0.054 0.946 38 H 0.029 0.971 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.101 0.899 46 H 0.133 0.867 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.870 -18.825 14.046 29.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.181 4.181 3 N -0.059 5.059 4 C -0.224 4.224 5 C 0.358 3.642 6 O -0.446 6.446 7 N -0.332 5.332 8 C 0.029 3.971 9 H 0.093 0.907 10 C 0.069 3.931 11 N -0.345 5.345 12 C -0.367 4.367 13 H 0.108 0.892 14 C -0.265 4.265 15 N -0.606 5.606 16 Si 0.809 3.191 17 H -0.198 1.198 18 H -0.228 1.228 19 H -0.200 1.200 20 C 0.015 3.985 21 C -0.075 4.075 22 C -0.180 4.180 23 C -0.180 4.180 24 C 0.284 3.716 25 O -0.420 6.420 26 N -0.197 5.197 27 H 0.282 0.718 28 C 0.081 3.919 29 C -0.186 4.186 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.251 0.749 34 H 0.025 0.975 35 H 0.012 0.988 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.119 0.881 46 H 0.151 0.849 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.656 -17.950 13.864 28.140 hybrid contribution 1.376 -0.469 -1.509 2.095 sum -15.279 -18.419 12.355 26.933 Atomic orbital electron populations 1.20716 0.83565 1.05093 1.04612 1.21060 0.99960 0.85156 1.11959 1.67416 1.07152 1.32071 0.99239 1.23080 0.89686 0.92622 1.16980 1.17577 0.86260 0.83636 0.76713 1.90827 1.14843 1.87451 1.51444 1.45551 1.10705 1.03963 1.73025 1.22172 0.95559 0.82679 0.96719 0.90678 1.21040 0.90595 0.91092 0.90359 1.44677 1.25826 1.50950 1.13058 1.19491 1.07254 1.19600 0.90317 0.89162 1.25749 0.97275 1.01041 1.02448 1.70270 1.14680 1.41322 1.34289 0.85110 0.76633 0.78329 0.79010 1.19801 1.22781 1.19986 1.21883 0.91630 0.99082 0.85895 1.21999 0.95796 0.93993 0.95693 1.21634 0.98543 1.01637 0.96180 1.21592 0.99598 0.96716 1.00096 1.19040 0.87851 0.85182 0.79512 1.91020 1.13721 1.86157 1.51055 1.43721 1.07461 1.11297 1.57251 0.71787 1.22597 0.82416 1.01163 0.85743 1.21613 1.00841 0.88303 1.07820 0.88837 0.91429 0.86983 0.74885 0.97495 0.98770 0.94889 0.92805 0.95322 0.92012 0.89755 0.92181 0.95049 0.89831 0.91732 0.88065 0.84881 0.85249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.65 71.24 0.69 0.09 16 2 C -0.05 -0.82 6.70 42.03 0.28 -0.54 16 3 N -0.34 -9.30 9.57 -169.23 -1.62 -10.92 16 4 C -0.06 -2.27 6.96 43.71 0.30 -1.97 16 5 C 0.57 25.76 7.80 86.68 0.68 26.44 16 6 O -0.57 -31.16 15.19 15.57 0.24 -30.92 16 7 N -0.68 -27.68 4.51 -440.09 -1.99 -29.66 16 8 C 0.13 5.95 2.54 46.18 0.12 6.07 16 9 H 0.08 3.52 7.52 -2.39 -0.02 3.50 16 10 C 0.20 11.08 4.80 86.73 0.42 11.49 16 11 N -0.62 -33.46 3.38 -691.99 -2.34 -35.80 16 12 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 13 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 14 C -0.07 -4.42 5.49 84.86 0.47 -3.95 16 15 N -0.96 -63.41 10.31 21.65 0.22 -63.19 16 16 Si 0.98 48.43 29.55 68.60 2.03 50.45 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 C 0.14 5.72 6.14 86.85 0.53 6.25 16 21 C -0.07 -2.57 0.83 -50.79 -0.04 -2.61 16 22 C -0.12 -3.10 8.22 71.98 0.59 -2.51 16 23 C -0.12 -4.05 8.57 71.98 0.62 -3.43 16 24 C 0.49 16.40 7.93 86.39 0.68 17.09 16 25 O -0.54 -23.82 16.40 14.72 0.24 -23.58 16 26 N -0.56 -9.95 5.29 -301.76 -1.60 -11.54 16 27 H 0.44 4.64 8.64 -92.71 -0.80 3.84 16 28 C 0.20 2.16 6.78 41.61 0.28 2.44 16 29 C -0.13 0.32 8.83 71.24 0.63 0.95 16 30 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 -0.03 6.43 -2.39 -0.02 -0.05 16 33 H 0.41 14.67 6.39 -92.71 -0.59 14.08 16 34 H 0.01 0.45 7.38 -2.39 -0.02 0.43 16 35 H -0.01 -0.39 7.41 -2.39 -0.02 -0.41 16 36 H 0.24 15.82 8.31 -92.71 -0.77 15.04 16 37 H 0.05 2.07 8.05 -2.39 -0.02 2.05 16 38 H 0.03 1.13 7.99 -2.39 -0.02 1.11 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.06 1.46 6.44 -2.38 -0.02 1.45 16 42 H 0.03 1.26 7.91 -2.38 -0.02 1.24 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.10 -0.54 7.90 -2.39 -0.02 -0.56 16 46 H 0.13 -0.87 8.09 -2.39 -0.02 -0.89 16 47 H 0.13 -0.72 7.37 -2.39 -0.02 -0.74 16 Total: -1.00 -99.62 379.55 1.92 -97.70 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -0.38 Total: 14.69 kcal Atomic # 6 Polarization: 35.66 SS G_CDS: 7.11 Total: 42.77 kcal Atomic # 7 Polarization: -143.79 SS G_CDS: -7.32 Total: -151.11 kcal Atomic # 8 Polarization: -54.98 SS G_CDS: 0.48 Total: -54.50 kcal Atomic # 14 Polarization: 48.43 SS G_CDS: 2.03 Total: 50.45 kcal Total: -99.62 1.92 -97.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974727125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.376 kcal (2) G-P(sol) polarization free energy of solvation -99.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds